Advanced Molecular Detection Clips Content (Published on 06/06/2024)
NEWS
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Why Extreme Syphilis Symptoms Are Showing Up Now
Gross RE. Atlantic, June 2, 2024. -
Momentum Builds for Amplification-Free Molecular Diagnostics, but Significant Hurdles Remain
Johnson M. 360dx, May 31, 2024. -
‘Smart’ antibiotic can kill deadly bacteria while sparing the microbiome
Schwaller F. Nature, May 29, 2024. -
‘Google for DNA’ indexes 10% of world’s known genetic sequences
Offord C. Science, Jun 5, 2024. -
Huge amounts of bird-flu virus found in raw milk of infected cows
Kozlov M. Nature, Jun 5, 2024. -
Man in Mexico dies in first known human case of H5N2 bird flu variant
Cho KK. Washington Post, Jun 6, 2024. -
Why the New Human Case of Bird Flu Is So Alarming
Bright R. New York Times, Jun 2, 2024. -
Finland to offer bird flu vaccine to select groups of people, a possible global first
Joseph A. STAT, Jun 4, 2024. -
H5 influenza wastewater dashboard launches
Schnirring L. CIDRAP, Jun 3, 2024. -
Early use of antivirals linked to reduced risk of long COVID
Soucheray S. CIDRAP, Jun 3, 2024. -
A little-known virus on the rise in South America could overwhelm health systems
Moutinho S. Science, Jun 5, 2024. -
Report describes emerging sexually transmitted fungal infection
Dall C. CIDRAP, Jun 5, 2024.
EVENTS / TRAINING / WEB RESOURCES
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WastewaterSCAN Dashboard
(dashboard) https://data.wastewaterscan.org/about, accessed Jun 3, 2024. -
MetaGraph
(website) https://metagraph.ethz.ch/, accessed Jun 5, 2024.
CONCEPTS / COMMENTS
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Assessment of the pathogen genomics landscape highlights disparities and challenges for effective AMR Surveillance and outbreak response in the East African community.
Julien A Nguinkal et al. BMC Public Health 2024 6 (1) 1500
METHODS / TOOLS
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How low can you go? Short-read polishing of Oxford Nanopore bacterial genome assemblies.
George Bouras et al. Microb Genom 2024 6 (6) -
Indexing All Life’s Known Biological Sequences
Karasikov M, et al. bioRxiv, May 14, 2024. -
Statistical and computational methods for integrating microbiome, host genomics, and metabolomics data.
Rebecca A Deek et al. Elife 2024 6
EVOLUTION / ECOLOGY / POPULATIONS
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Complete genome sequences of Clostridioides difficile surveillance isolates representing the top 10 ribotypes from the Emerging Infections Program, United States, 2016.
Michelle Adamczyk et al. Microbiol Resour Announc 2024 5 e0112823 -
Analysis of global Aeromonas caviae genomes revealed that strains carrying T6SS are more common in human gastroenteritis than in environmental sources and are often phylogenetically related.
Sarah K T Chong et al. Microb Genom 2024 5 (5) -
Meta-analyses of the global multilocus genotypes of the human pathogen Campylobacter jejuni.
Monir Poorrashidi et al. Genome 2024 3 (6) 189-203 -
Genetic variation and evolutionary characteristics of Echovirus 11: New variant within genotype D5 associated with neonatal death found in China.
Liu Ying et al. Emerg Microbes Infect 2024 6 2361814 -
The key role of Spain in the traffic of West Nile virus lineage 1 strains between Europe and Africa.
Pilar Aguilera-Sepúlveda et al. Infect Dis (Lond) 2024 6 1-16 -
Emergence of the novel sixth Candida auris Clade VI in Bangladesh.
Tahsin Khan et al. Microbiol Spectr 2024 6 e0354023 -
Genetic diversity and host specificity of Blastocystis in reptiles, Eastern Thailand.
Chantira Sutthikornchai et al. Vet Parasitol 2024 6 110218
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Drug resistance and epidemiological success of modern Mycobacterium tuberculosis lineages in western India.
Avika Dixit et al. J Infect Dis 2024 5 -
Antimicrobial resistance and genetic relatedness among Campylobacter coli and Campylobacter jejuni from humans and retail chicken meat in Taiwan.
Hsiao-Lun Wei et al. J Glob Antimicrob Resist 2024 5 -
ESKAPE pathogens: antimicrobial resistance, epidemiology, clinical impact and therapeutics.
William R Miller et al. Nat Rev Microbiol 2024 6 -
Utilizing co-abundances of antimicrobial resistance genes to identify potential co-selection in the resistome.
Hannah-Marie Martiny et al. Microbiol Spectr 2024 6 e0410823 -
Tracking antimicrobial resistance transmission in urban and rural communities in Bangladesh: a One Health study of genomic diversity of ESBL-producing and carbapenem-resistant Escherichia coli.
Brandon M Flatgard et al. Microbiol Spectr 2024 5 (6) e0395623 -
Recurrent Group B Streptococcus neonatal invasive infections, France, 2007 -2021.
Ghalia Sbaa et al. J Infect Dis 2024 6 -
Impact of Sulfadoxine-Pyrimethamine and Dihydroartemisinin-Piperaquine as Intermittent Preventive Treatment in Pregnancy on Stool Antimicrobial Resistance Gene Abundance.
Kofi B Opoku et al. Am J Trop Med Hyg 2024 5 -
Antigenic Characterization of Circulating and Emerging SARS-CoV-2 Variants in the U.S. throughout the Delta to Omicron Waves.
Han Di et al. Vaccines (Basel) 2024 5 (5)
DETECTION / DIAGNOSIS
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Newly Recognized Spotted Fever Group Rickettsia as Cause of Severe Rocky Mountain Spotted Fever-Like Illness, Northern California, USA.
Will S Probert et al. Emerg Infect Dis 2024 5 (7) -
Characterizing the etiology of recurrent tuberculosis using whole genome sequencing-Alaska, USA, 2008-2020.
Yuri P Springer et al. J Infect Dis 2024 5 -
Developing best practice public health standards for whole genome sequencing of Mycobacterium tuberculosis.
Justin T Denholm et al. Lancet Reg Health West Pac 2024 6 101014 -
Persistence of vaccine origin Salmonella Typhimurium through the poultry production continuum, and development of a rapid typing scheme for their differentiation from wild type field isolates.
Timothy J Johnson et al. Poult Sci 2024 4 (6) 103707 -
Invasive pneumococcal disease surveillance in Canada, 2021-2022.
Averil Griffith et al. Can Commun Dis Rep 2024 6 (5) 121-134 -
Invasive group A streptococcal disease surveillance in Canada, 2021-2022.
Alyssa R Golden et al. Can Commun Dis Rep 2024 6 (5) 135-143 -
SARS-CoV-2 wastewater variant surveillance: pandemic response leveraging FDA's GenomeTrakr network.
Ruth E Timme et al. mSystems 2024 5 e0141523 -
Detection of Novel Influenza Viruses Through Community and Healthcare Testing: Implications for Surveillance Efforts in the United States.
Sinead E Morris et al. Influenza Other Respir Viruses 2024 5 (5) e13315 -
Evaluation of the Increased Genetic Resolution and Utility for Source Tracking of a Recently Developed Method for Genotyping Cyclospora cayetanensis.
Susan R Leonard et al. Microorganisms 2024 5 (5)
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Outbreak of multidrug-resistant Salmonella infections in people linked to pig ear pet treats, United States, 2015–2019: results of a multistate investigation
Nichols, M., et al. Lancet Reg Health - Am 2024 34 -
Salmonella Hadar linked to two distinct transmission vehicles highlights challenges to enteric disease outbreak investigations.
Joshua M Brandenburg et al. Epidemiol Infect 2024 5 1-27 -
Unraveling tuberculosis patient cluster transmission chains: integrating WGS-based network with clinical and epidemiological insights.
Darja Sadovska et al. Front Public Health 2024 6 1378426 -
Impact of discontinuation of contact precautions on surveillance- and whole genome sequencing-defined methicillin-resistant Staphylococcus aureus healthcare-associated infections.
Sharon Karunakaran et al. Antimicrob Steward Healthc Epidemiol 2024 6 (1) e97 -
Spatiotemporal transmission of SARS-CoV-2 lineages during 2020-2021 in Pernambuco-Brazil.
Lais Ceschini Machado et al. Microbiol Spectr 2024 4 (6) e0421823 -
Fine-scale spatial and social patterns of SARS-CoV-2 transmission from identical pathogen sequences.
Cécile Tran-Kiem et al. medRxiv 2024 6 -
Sudan virus disease super-spreading, Uganda, 2022.
Allan Komakech et al. BMC Infect Dis 2024 5 (1) 520 -
Massive outbreak of Influenza A H5N1 in elephant seals at Península Valdés, Argentina: increased evidence for mammal-to-mammal transmission
Uhart M, et al. bioRxiv, Jun 1, 2024.
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Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2024
- Page last updated:Sep 5, 2024