Advanced Molecular Detection Clips Content (Published on 05/27/2021)
NEWS
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New Coronavirus Detected In Patients At Malaysian Hospital; The Source May Be Dogs
Doucleff M. NPR, May 20, 2021. -
New Variant Posing Threat, as Global Vaccine Drive Falters
Mueller B. New York Times, May 24, 2021. -
What scientists know about new, fast-spreading coronavirus variants
Adam D. Nature, May 24, 2021. -
Free, At-Home Rapid SARS-CoV-2 Tests
Rubin R. JAMA, May 25, 2021. -
Coronavirus Mutations Could Muddle COVID-19 PCR Tests
Lee JJ. The Scientist, May 17, 2021. -
Penn Medicine Researchers Targeting Broad SARS-CoV-2 Testing With Four-Minute, $5 Biosensor
O'Connor L. 360dx, May 21, 2021. -
Blind spots thwart global coronavirus tracking
Wadman M. Science, May 21, 2021. -
Mild, asymptomatic COVID-19 cases may be as infectious as severe ones
Van Beusekorn M. CIDRAP, May 26, 2021. -
Bitter Taste Receptor Variant Correlates With COVID-19 Clinical Course
GenomeWeb, May 26, 2021. -
Why CDC Changed Its 'Breakthrough Case' Definition
Hackethal V. MedPage Today, May 26, 2021. -
Immunity to the Coronavirus May Persist for Years, Scientists Find
Mandavilli A. New York Times, May 26, 2021. -
Scientists reveal structural details of how SARS-CoV-2 variants escape immune response
Scripps Research Institute, May 21, 2021. -
Scientists zero in on long-sought marker of COVID-vaccine efficacy
Mallapaty S. Nature, May 21, 2021.
CONCEPTS / COMMENTS
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The "Legal Epidemiology" of Pandemic Control
Burris S, et al. New Engl J Med, May 27, 2021. -
Ten simple rules to make your publication look better.
Ehrhart Friederike et al. PLoS computational biology 2021 5 (5) e1008938
METHODS / TOOLS
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Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2
O'Toole A, et al. Wellcome Open Research, May 19, 2021. -
Multi Locus View: an extensible web-based tool for the analysis of genomic data.
Sergeant Martin J et al. Communications biology 2021 5 (1) 623
EVOLUTION / ECOLOGY / POPULATIONS
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Genomic epidemiology of SARS-CoV-2 in Esteio, Rio Grande do Sul, Brazil.
Franceschi Vinícius Bonetti et al. BMC genomics 2021 5 (1) 371 -
Novel SARS-CoV-2 variants: the pandemics within the pandemic.
Boehm Erik et al. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2021 5 -
Dispersal dynamics of SARS-CoV-2 lineages during the first epidemic wave in New York City.
Dellicour Simon et al. PLoS pathogens 2021 5 (5) e1009571 -
COVID-19 in Amazonas, Brazil, was driven by the persistence of endemic lineages and P.1 emergence.
Naveca Felipe Gomes et al. Nature medicine 2021 5 -
Emergence of SARS-CoV-2 variants of concern in the pediatric population of the United States
Bard JD, et al. medRxiv, May 24, 2021. -
Identification and trajectory of growth of concerning SARS-CoV-2 variants in Houston, Texas, January through April 2021 based on 11,568 genome sequences
Olsen RJ, et al. medRxiv, May 23, 2021. -
Genomic reconstruction of the SARS-CoV-2 epidemic across England from September 2020 to May 2021
Vohringer HS, et al. medRxiv, May 26, 2021. -
Quasispecies of SARS-CoV-2 revealed by single nucleotide polymorphisms (SNPs) analysis.
Gao Rongsui et al. Virulence 2021 5 (1) 1209-1226 -
Structural and functional ramifications of antigenic drift in recent SARS-CoV-2 variants.
Yuan Meng et al. Science (New York, N.Y.) 2021 5 -
Predominance of the SARS-CoV-2 lineage P.1 and its sublineage P.1.2 in patients from the metropolitan region of Porto Alegre, Southern Brazil in March 2021: a phylogenomic analysis
Franceschi VB, et al. medRxiv, May 22, 2021. -
Emerging H5N8 avian influenza viruses.
Shi Weifeng et al. Science (New York, N.Y.) 2021 5 (6544) 784-786 -
Whole-genome sequencing and phylogenetic analysis of rabies viruses from Jordan.
Al-Eitan Laith N et al. PLoS neglected tropical diseases 2021 5 (5) e0009431 -
Molecular Epidemiology and Evolutionary Trajectory of Emerging Echovirus 30, Europe.
Benschop Kimberley S M et al. Emerging infectious diseases 2021 5 (6) 1616-1626 -
Chromosome-Level Genome Sequence of Leishmania (Leishmania) tropica Strain CDC216-162, Isolated from an Afghanistan Clinical Case.
Unoarumhi Yvette et al. Microbiology resource announcements 2021 5 (20)
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Deep amplicon sequencing highlights low intra-host genetic variability of Echinococcus multilocularis and high prevalence of the European-type haplotypes in coyotes and red foxes in Alberta, Canada.
Santa Maria A et al. PLoS neglected tropical diseases 2021 5 (5) e0009428 -
First report of novel assemblages and mixed infections of Giardia duodenalis in human isolates from New Zealand.
Garcia-R Juan C et al. Acta tropica 2021 5 105969 -
Multilocus sequence analysis provides new insight into population structure and genetic diversity of Leishmania tropica in Morocco.
El Kacem Sofia et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2021 5 104932
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Epidemiology, evolution and cryptic susceptibility of methicillin-resistant Staphylococcus aureus in China: a whole-genome-based survey.
Chen Yan et al. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2021 5 -
Shedding of Viable Virus in Asymptomatic SARS-CoV-2 Carriers.
Murata Takayuki et al. mSphere 2021 5 (3) -
Isolation and characterization of novel reassortant mammalian orthoreovirus from pigs in the United States.
Wang Liping et al. Emerging microbes & infections 2021 5 1-43
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Genomic epidemiology of Candida auris in a general hospital in Shenyang, China: a three-year surveillance study.
Tian Sufei et al. Emerging microbes & infections 2021 5 1-28
DETECTION / DIAGNOSIS
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A Pilot Study Revealing Host-Associated Genetic Signatures for Source attribution of Sporadic Campylobacter jejuni Infection in Egypt.
Saif Nehal A et al. Transboundary and emerging diseases 2021 5 -
Implementation of a qPCR assay coupled with genomic surveillance for real-time monitoring of SARS-CoV-2 variants of concern.
Rego N, et al. medRxiv, May 22, 2021. -
Rapid identification of Sars-CoV-2 variants of concern using the portable peakPCR platform
Hosch S, et al. medRxiv, May 21, 2021. -
Real-time SARS-CoV-2 diagnostic and variants tracking over multiple candidates using nanopore DNA sequencing
Studer F, et al. medRxiv, May 22, 2021. -
Canadian national COVID-19 genomics surveillance priorities for existing and emerging variants of concern.
et al. Canada communicable disease report = Releve des maladies transmissibles au Canada 2021 5 (3) 139-141
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Variants of concern are overrepresented among post-vaccination breakthrough infections of SARS-CoV-2 in Washington State
McEwen AE, et al. medRxiv, May 25, 2021. -
High-resolution within-sewer SARS-CoV-2 surveillance facilitates informed intervention
Reeves K, et al. medRxiv, May 26, 2021. -
Multiplex SARS-CoV-2 Genotyping RT-PCR for Population-Level Variant Screening and Epidemiologic Surveillance.
Wang Hannah et al. Journal of clinical microbiology 2021 5 JCM0085921 -
Proposal for Human Respiratory Syncytial Virus Nomenclature below the Species Level.
Salimi Vahid et al. Emerging infectious diseases 2021 5 (6) 1-9
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Novel Canine Coronavirus Isolated from a Hospitalized Pneumonia Patient, East Malaysia.
Vlasova Anastasia N et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2021 5 -
The feasibility of modified HIV and antiretroviral drug testing using self-collected dried blood spots from men who have sex with men.
Luo Wei et al. BMC infectious diseases 2021 5 (1) 423
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Genomic insights into the emergence and spread of methicillin-resistant Staphylococcus pseudintermedius in veterinary clinics.
Papic Bojan et al. Veterinary microbiology 2021 5 109119 -
Epidemiological characteristics of three SARS-CoV-2 variants of concern and implications for future COVID-19 pandemic outcomes
Yang W, Shaman J. medRxiv, May 21, 2021. -
Hepatitis A outbreak associated with consumption of dates, England and Wales, January 2021 to April 2021.
Garcia Vilaplana Tatiana et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2021 5 (20)
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Precision Tracing of Household Dengue Spread Using Inter- and Intra-Host Viral Variation Data, Kamphaeng Phet, Thailand.
Berry Irina Maljkovic et al. Emerging infectious diseases 2021 5 (6) 1637-1644 -
An outbreak of hepatitis C virus attributed to the use of multi-dose vials at a colonoscopy clinic, Waterloo Region, Ontario.
Folkema Arianne et al. Canada communicable disease report = Releve des maladies transmissibles au Canada 2021 5 (4) 224-231
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Longitudinal typing of molecular HIV clusters in a statewide epidemic.
Vlad Novitsky et al. AIDS 2021 5 (11) 1711-1722 -
Genetic and Epidemiologic Analyses of an Outbreak of Pneumocystis jirovecii Pneumonia among Kidney Transplant Recipients in the United States.
Azar Marwan M et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2021 5
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Circulating SARS-CoV-2 Vaccine Antigen Detected in the Plasma of mRNA-1273 Vaccine Recipients.
Ogata Alana F et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2021 5
HOST-MICROBE INTERACTIONS
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SARS-CoV-2 variants: Subversion of antibody response and predicted impact on T cell recognition
Altmann DM, et al. Cell Rep Med, May 18, 2021. -
SARS-CoV-2 Human T cell Epitopes: adaptive immune response against COVID-19.
Grifoni A, et al. Cell Host Microbe, May 21, 2021. -
Epitope profiling reveals binding signatures of SARS-CoV-2 immune response in natural infection and cross-reactivity with endemic human CoVs.
Stoddard Caitlin I et al. Cell reports 2021 5 109164 -
Differential Cytokine Signatures of SARS-CoV-2 and Influenza Infection Highlight Key Differences in Pathobiology.
Karaba Andrew H et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2021 5 -
Transmission dynamics of SARS-CoV-2 within-host diversity in two major hospital outbreaks in South Africa.
San James E et al. Virus evolution 2021 5 (1) veab041 -
Whole-genome analysis of Malawian Plasmodium falciparum isolates identifies possible targets of allele-specific immunity to clinical malaria.
Shah Zalak et al. PLoS genetics 2021 5 (5) e1009576 -
Gut resistome of preschool children after prolonged mass azithromycin distribution: a cluster-randomized trial.
Arzika Ahmed M et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2021 5
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Associations of healthy food choices with gut microbiota profiles.
Koponen Kari K et al. The American journal of clinical nutrition 2021 5 -
Tobacco smoking and the fecal microbiome in a large, multi-ethnic cohort.
Prakash Ajay et al. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2021 5
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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