Advanced Molecular Detection Clips Content (Published on 05/11/2017)
NEWS
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Nations Press for International Restrictions to Govern Genetic Sequence Data
Manheim BS. Genet Eng & Biotech News, May 10, 2017. -
Update on unexplained cluster of deaths Liberia
WHO, May 10, 2017. -
1 pregnant woman found to have Zika after DC testing error
AP, May 9, 2017. -
Drug-Resistant TB on the Rise in These Four Countries
Bachert A. MedPage Today, May 10, 2017. -
Nanopore-Based Proteome Profiling Within Reach, Study Suggests
Bonislawski A. GenomeWeb, May 9, 2017. -
Outbreaks, Evolution, and Rock 'n' Roll: Topol Talks to Pardis Sabeti
(video) Topol EJ, Sabeti P. Medscape, May 10, 2017.
EVENTS / TRAINING / WEB RESOURCES
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NCBI to assist with NYGC Genomics Hackathon June 19-21
(event) NCBI Insights, May 8, 2017. -
Genome data download made easy!
(announcement) NCBI Insights, May 8, 2017.
CONCEPTS / COMMENTS
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1926-2016: 90 Years of listeriology.
Lebreton Alice et al. Microbes and infection 2016 Dec (12) 711-723 -
Tell me a story! A plea for more compelling conference presentations
Langin K. The Condor, May 3, 2017. -
Ten simple rules to consider regarding preprint submission.
Bourne Philip E et al. PLoS computational biology 2017 May (5) e1005473 -
Antibiotic resistance has a language problem.
Mendelson Marc et al. Nature 2017 May (7652) 23-25 -
Pocket laboratories.
Perkel Jeffrey M et al. Nature 2017 May (7652) 119-121
METHODS / TOOLS
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Single-molecule protein identification by sub-nanopore sensors.
Kolmogorov Mikhail et al. PLoS computational biology 2017 May (5) e1005356 -
IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets.
Bertelli Claire et al. Nucleic acids research 2017 May -
ICoVeR - an interactive visualization tool for verification and refinement of metagenomic bins.
Broeksema Bertjan et al. BMC bioinformatics 2017 May (1) 233 -
The use of informativity in the development of robust viromics-based examinations.
Watkins Siobhan C et al. PeerJ 2017 e3281 -
vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria.
Bolduc Benjamin et al. PeerJ 2017 e3243 -
Stability of Zika Virus in Urine: Specimen Processing Considerations and Implications for the Detection of RNA Targets in Urine.
Tan Susanna K et al. Journal of virological methods 2017 May -
Methodological approaches for monitoring opportunistic pathogens in premise plumbing: A review.
Wang Hong et al. Water research 2017 Jun 68-86
EVOLUTION / ECOLOGY / POPULATIONS
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European Chlamydia abortus livestock isolate genomes reveal unusual stability and limited diversity, reflected in geographical signatures.
Seth-Smith H M B et al. BMC genomics 2017 May (1) 344 -
Ultra-deep sequencing reveals high prevalence and broad structural diversity of hepatitis B surface antigen mutations in a global population.
Gencay Mikael et al. PloS one 2017 (5) e0172101 -
Cowpox virus: What's in a Name?
Mauldin Matthew R et al. Viruses 2017 May (5) -
Genetic diversity and population structure of the tsetse fly Glossina fuscipes fuscipes (Diptera: Glossinidae) in Northern Uganda: Implications for vector control.
Opiro Robert et al. PLoS neglected tropical diseases 2017 Apr (4) e0005485 -
Constraints on the Genetic and Antigenic Variability of Measles Virus.
Beaty Shannon M et al. Viruses 2016 Apr (4) 109
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Whole Genome Sequencing Accurately Identifies Resistance to Extended Spectrum β-Lactams for Major Gram-Negative Bacterial Pathogens.
Shelburne Samuel A et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 May -
HIV-1 strains belonging to large phylogenetic clusters show accelerated escape from integrase inhibitors in cell culture compared with viral isolates from singleton/small clusters.
Brenner Bluma G et al. The Journal of antimicrobial chemotherapy 2017 May -
A Nonsynonymous SNP Catalog of Mycobacterium tuberculosis Virulence Genes and Its Use for Detecting New Potentially Virulent Sublineages.
Mikheecheva Natalya E et al. Genome biology and evolution 2017 Apr (4) 887-899 -
Longitudinal study of Plasmodium pathogens identifies new loci associated with artemisinin resistance.
Winzeler Elizabeth A et al. Genome biology 2017 Apr (1) 79
DETECTION / DIAGNOSIS
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Single-nucleotide polymorphism typing analysis for molecular subtyping of Salmonella Tennessee isolates associated with the 2007 nationwide peanut butter outbreak in the United States.
Hee-Jin Dong et al. Gut Pathog 2017 5 25 -
The Use of Next-Generation Sequencing in the Identification of a Fastidious Pathogen: A Lesson From a Clinical Setup.
Saeb Amr Tm et al. Evolutionary bioinformatics online 2017 1176934316686072 -
Performance of TaqMan array card to detect TB drug resistance on direct specimens.
Banu Sayera et al. PloS one 2017 (5) e0177167 -
External quality assessment study for ebolavirus PCR-diagnostic promotes international preparedness during the 2014 - 2016 Ebola outbreak in West Africa.
Ellerbrok Heinz et al. PLoS neglected tropical diseases 2017 May (5) e0005570 -
Rapid and specific detection of Asian- and African-lineage Zika viruses.
Chotiwan Nunya et al. Science translational medicine 2017 May (388)
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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A Geographically Widespread Outbreak Investigation and Development of a Rapid Screening Method Using Whole Genome Sequences of Enterohemorrhagic Escherichia coli O121.
Lee Ken-Ichi et al. Frontiers in microbiology 2017 701 -
MRSA Transmission Dynamics Among Interconnected Acute, Intermediate-Term, and Long-Term Healthcare Facilities in Singapore.
Chow Angela et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 May (suppl_2) S76-S81 -
Rapid Emergence of a New Clone Impacts the Population at Risk and Increases the Incidence of Type emm89 Group A Streptococcus Invasive Disease.
Teatero Sarah et al. Open forum infectious diseases 2017 (2) ofx042 -
2015 Epidemic of Severe Streptococcus agalactiae Sequence Type 283 Infections in Singapore Associated With the Consumption of Raw Freshwater Fish: A Detailed Analysis of Clinical, Epidemiological, and Bacterial Sequencing Data.
Kalimuddin Shirin et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 May (suppl_2) S145-S152 -
Genomic and Epidemiological Evidence for Community Origins of Hospital-Onset Methicillin-Resistant Staphylococcus aureus Bloodstream Infections.
Popovich Kyle J et al. The Journal of infectious diseases 2017 May -
Large Cluster of Neisseria meningitidis Urethritis in Columbus, Ohio, 2015.
Jose A Bazan et al. Clin Infect Dis 2017 5 (1) 92-99 -
Whole Genome Sequencing reveals the contribution of long-term carriers in Staphylococcus aureus outbreak investigation.
Gordon N C et al. Journal of clinical microbiology 2017 May -
Genomic epidemiology of a national outbreak of post-surgical Mycobacterium abscessus wound infections in Brazil
Everall I, et al. Microbial Genomics, May 3, 2017. -
Patterns of transmitted drug resistance and virological response to first-line antiretroviral treatment among HIV-positive people who use illicit drugs in a Canadian setting.
Socías M Eugenia et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 May -
Molecular Demonstration of a Pneumocystis Outbreak in Stem Cell Transplant Patients: Evidence for Transmission in the Daycare Center.
Robin Christine et al. Frontiers in microbiology 2017 700
HOST-MICROBE INTERACTIONS
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The microbiome in allergic disease: Current understanding and future opportunities-2017 PRACTALL document of the American Academy of Allergy, Asthma & Immunology and the European Academy of Allergy and Clinical Immunology.
Huang Yvonne J et al. The Journal of allergy and clinical immunology 2017 Apr (4) 1099-1110 -
Group B Streptococci Colonization in Pregnant Guatemalan Women: Prevalence, Risk Factors, and Vaginal Microbiome.
Rick Anne-Marie et al. Open forum infectious diseases 2017 (1) ofx020 -
Complete genome sequencing and clinical analysis of intrahepatic hepatitis B virus cccDNA from HCC.
Jiao Fengping et al. Microbial pathogenesis 2017 May -
A nonsense mutation in TLR5 is associated with survival and reduced IL-10 and TNF-α levels in human Melioidosis.
Chaichana Panjaporn et al. PLoS neglected tropical diseases 2017 May (5) e0005587
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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