Advanced Molecular Detection Clips Content (Published on 05/16/2024)
NEWS
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Powerful ‘nanopore’ DNA sequencing method tackles proteins too
Seydel C. Nature, May 8, 2024. -
VIRUS GONE WILD An ambitious U.S. project aims to sample more than 50 animal species to clarify how the COVID-19 virus moves between people and wildlife
Cohen J. Science, Apr 29, 2024. -
Data suggest SARS-CoV-2 could jump from raccoon dogs to people, but species barrier may interfere
Van Beusekom M. CIDRAP, May 10, 2024. -
There’s a New Covid Variant. What Will That Mean for Spring and Summer?
Blum D. New York Times, May 10, 2024. -
USDA, FDA turf battles hamper responses to outbreaks like H5N1 bird flu
Zhang RC, et al. STAT, May 14, 2024. -
Wastewater testing finds H5N1 avian flu in 9 Texas cities
Schnirring L. CIDRAP, May 13, 2024. -
Avian Flu Update: U.S. Announces More Than $175 Million to Track, Contain H5N1
Frieden J. MedPage Today, May 10, 2024. -
CDC Launches Influenza A Wastewater Surveillance Dashboard
Johnson M. GenomeWeb, May 15, 2024. -
Cows might host both human and bird flus
Saey TS. Science News, May 14, 2024. -
CRISPR edits fail to cure HIV patients in early test
Mast J. STAT, May 10, 2024. -
‘Unqualified failure’ in polio vaccine policy left thousands of kids paralyzed
Roberts L. Science, May 7, 2024.
CONCEPTS / COMMENTS
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FDA's proposed rule and its regulatory impact on emerging and reemerging neglected tropical diseases in the United States.
Alberto E Paniz-Mondolfi et al. PLoS Negl Trop Dis 2024 5 (5) e0012116 -
Understanding the biology of monkeypox virus to prevent future outbreaks.
Bernard Moss et al. Nat Microbiol 2024 5 -
Considering the host in host-pathogen interactions.
et al. Nat Microbiol 2024 5 (5) 1149
METHODS / TOOLS
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SaLTy: a novel Staphylococcus aureus Lineage Typer.
Liam Cheney et al. Microb Genom 2024 5 (5) -
Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID pipeline.
Charles Langelier et al. Res Sq 2024 5 -
Viral genome sequencing methods: benefits and pitfalls of current approaches.
Natasha Jansz et al. Biochem Soc Trans 2024 5 -
MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data.
Kang Soo Lee et al. Nat Microbiol 2024 5 (5) 1152-1156 -
Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny.
Martin Hunt et al. bioRxiv 2024 5
EVOLUTION / ECOLOGY / POPULATIONS
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Rapid expansion and international spread of M1 in the post-pandemic UK upsurge of Streptococcus pyogenes.
Ana Vieira et al. Nat Commun 2024 5 (1) 3916 -
The impact of pneumococcal serotype replacement on the effectiveness of a national immunization program: a population-based active surveillance cohort study in New Zealand.
Andrew Anglemyer et al. Lancet Reg Health West Pac 2024 5 101082 -
Molecular evolutionary characteristics of severe acute respiratory syndrome coronavirus 2 and the relatedness of epidemiological and socio-environmental factors.
Kyuyoung Shim et al. Heliyon 2024 5 (9) e30222 -
Seasonal human coronavirus NL63 epidemics in children in Guilin, China, reveal the emergence of a new subgenotype of HCoV-NL63.
Renhe Zhu et al. Front Cell Infect Microbiol 2024 5 1378804 -
Characterizing the antigenic evolution of pandemic influenza A (H1N1) pdm09 from 2009 to 2023.
Peiwen Cheng et al. J Med Virol 2024 5 (5) e29657 -
Evolution and genetic characterization of Seoul virus in wild rats Rattus norvegicus from an urban park in Lyon, France 2020-2022.
Hussein Alburkat et al. PLoS Negl Trop Dis 2024 5 (5) e0012142 -
Detection of clade 2.3.4.4b highly pathogenic H5N1 influenza virus in New York City.
Philip S Meade et al. J Virol 2024 5 e0062624 -
Metatranscriptomic investigation of single Ixodes pacificus ticks reveals diverse microbes, viruses, and novel mRNA-like endogenous viral elements.
Calla Martyn et al. mSystems 2024 5 e0032124 -
The Anopheles coluzzii range extends into Kenya: detection, insecticide resistance profiles and population genetic structure in relation to conspecific populations in West and Central Africa.
Luna Kamau et al. Malar J 2024 4 (1) 122
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Accumulation of resistance genes in Salmonella Typhimurium transmitted between poultry and dairy farms increases the risk to public health.
Janet Perry et al. Appl Environ Microbiol 2024 5 e0229723 -
Antimicrobial resistance and population genomics of emerging multidrug-resistant Salmonella 4,[5],12:i:- in Guangdong, China.
Ruan-Yang Sun et al. mSystems 2024 5 e0116423 -
High frequency of artemisinin partial resistance mutations in the great lake region revealed through rapid pooled deep sequencing.
Neeva Wernsman Young et al. medRxiv 2024 5
DETECTION / DIAGNOSIS
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Notes from the Field: Increase in Nontoxigenic Corynebacterium diphtheriae - Washington, 2018-2023.
Amy G Xie et al. MMWR Morb Mortal Wkly Rep 2024 5 (17) 405-407 -
Machine learning based DNA melt curve profiling enables automated novel genotype detection.
Aaron Boussina et al. BMC Bioinformatics 2024 5 (1) 185 -
Continued improvement in the development of the SARS-CoV-2 whole genome sequencing proficiency testing program.
Katherine A Lau et al. Pathology 2024 5 -
Analytical validation of a semi-automated methodology for quantitative measurement of SARS-CoV-2 RNA in wastewater collected in northern New England.
Ashlee A Robbins et al. Microbiol Spectr 2024 5 e0112223 -
Environmental Surveillance of Flood Control Infrastructure Impacted by Unsheltered Individuals Leads to the Detection of SARS-CoV-2 and Novel Mutations in the Spike Gene.
Anthony Harrington et al. Environ Sci Technol Lett 2024 5 (5) 410-417 -
Early Detection of the Emerging SARS-CoV-2 BA.2.86 Lineage Through Wastewater Surveillance Using a Mediator Probe PCR Assay - Shenzhen City, Guangdong Province, China, 2023.
Chen Du et al. China CDC Wkly 2024 5 (15) 332-338 -
Genomic Surveillance for SARS-CoV-2 Variants: Dominance of XBB Replacement - China, January-June 2023.
Yenan Feng et al. China CDC Wkly 2024 5 (15) 324-331 -
Prevalence and Genetic Diversity of Adenovirus 40/41, Astrovirus, and Sapovirus in Children with Acute Gastroenteritis in Kansas City 2011-2016.
Marta Diez-Valcarce et al. J Infect Dis 2024 5 -
Highly Pathogenic Avian Influenza A(H5N1) Virus Infection in a Dairy Farm Worker.
Timothy M Uyeki et al. N Engl J Med 2024 5 -
Detection of mpox virus in wastewater provides forewarning of clinical cases in Canadian cities.
Edgard M Mejia et al. Sci Total Environ 2024 5 173108
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Epidemiological and molecular investigations of sequential outbreaks of Campylobacter jejuni infecting adults and schoolchildren in southeastern China, 2021-2022.
Leyi Zhang et al. Int J Infect Dis 2024 5 107055 -
Hospital outbreak of Carbapenem-resistant acinetobacter baumannii in the context of local facility transmission.
Malik M Darwish et al. Am J Infect Control 2024 1 (6) 739-741 -
Genomic sequencing surveillance of patients colonized with vancomycin-resistant Enterococcus (VRE) improves detection of hospital-associated transmission.
Alexander J Sundermann et al. medRxiv 2024 5 -
HIV co-infection is associated with reduced Mycobacterium tuberculosis transmissibility in sub-Saharan Africa.
Etthel M Windels et al. PLoS Pathog 2024 5 (5) e1011675
HOST-MICROBE INTERACTIONS
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A bioinformatics approach to systematically analyze the molecular patterns of monkeypox virus-host cell interactions.
Zhongxiang Tang et al. Heliyon 2024 5 (9) e30483 -
High-resolution African HLA resource uncovers HLA-DRB1 expression effects underlying vaccine response.
Alexander J Mentzer et al. Nat Med 2024 5
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Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2024
- Page last updated:Sep 5, 2024