Advanced Molecular Detection Clips Content (Published on 05/11/2023)
NEWS
-
Chan Zuckerberg ID Makes Strides in Enabling Pathogen Identification From Metagenomic Data
Zhang H. GenomeWeb, May 8, 2023. -
The sleight-of-hand trick that can simplify scientific computing
Perkel JM. Nature, May 1, 2023. -
Experts See Lessons for Next Pandemic as Covid Emergency Comes to an End
Stolberg SG, Weiland N. New York Times, May 11, 2023. -
Wuhan market samples fail to shed further light on COVID origins
Lewis D. Nature, May 4, 2023. -
‘It’s still killing and it’s still changing.’ Ending COVID-19 states of emergency sparks debate
Kupferschmidt K, Wadman M. Science, May 5, 2023. -
Mpox resurgence reported in Chicago
Schnirring L. CIDRAP, May 8, 2023. -
A frightening virus is killing a massive number of wild birds
Jones B. Vox, May 9, 2023. -
NIH reinstates grant for controversial coronavirus research
Kozlov M. Nature, May 8, 2023. -
How generative AI is building better antibodies
Callaway E. Nature, May 4, 2023. -
First human ‘pangenome’ aims to catalogue genetic diversity
Liverpool L. Nature, May 10, 2023.
CONCEPTS / COMMENTS
-
Transforming tuberculosis diagnosis.
Madhukar Pai et al. Nat Microbiol 2023 5 (5) 756-759 -
Combating West Nile Virus Disease - Time to Revisit Vaccination.
Carolyn V Gould et al. N Engl J Med 2023 5 (18) 1633-1636
METHODS / TOOLS
-
A panel of diverse Klebsiella pneumoniae clinical isolates for research and development.
Melissa J Martin et al. Microb Genom 2023 5 (5) -
ResMiCo: Increasing the quality of metagenome-assembled genomes with deep learning.
Olga Mineeva et al. PLoS Comput Biol 2023 5 (5) e1011001 -
CoVnita, an end-to-end privacy-preserving framework for SARS-CoV-2 classification.
Jun Jie Sim et al. Sci Rep 2023 5 (1) 7461 -
NGS implementation for monitoring SARS-CoV-2 variants in Chicagoland: An institutional perspective, successes and challenges.
Aileen C Tartaninan et al. Front Public Health 2023 5 1177695
EVOLUTION / ECOLOGY / POPULATIONS
-
Evolution and epidemic success of Mycobacterium tuberculosis in eastern China: evidence from a prospective study.
Zonglei Zhou et al. BMC Genomics 2023 5 (1) 241 -
Population genomics implies potential public health risk of two non-toxigenic Vibrio cholerae lineages.
Tongyu Hao et al. Infect Genet Evol 2023 5 105441 -
Candidate historical events for the emergence of Human Coronavirus OC43: A critical reassessment of the molecular evidence.
Brandon Shaw et al. PLoS One 2023 5 (5) e0285481 -
Analysis of SARS-CoV-2 variants from patient specimens in Nevada from October 2020 to August 2021.
Shannon Harger Payen et al. Infect Genet Evol 2023 4 105434 -
Whole genome sequencing and evolution analyses of Human metapneumovirus.
Tianli Wei et al. Virus Genes 2023 5 1-8 -
Investigating intermediate hosts of Echinococcus multilocularis throughout Turkey: Focus on voles.
Ali Tümay Gürler et al. Zoonoses Public Health 2023 3 (4) 352-360
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
-
Study highlights persistence of carbapenem-resistant Acinetobacter in hospitals
Dall C. CIDRAP, May 9, 2023. -
Dissemination of carbapenemase-producing Enterobacterales through wastewater and gulls at a wastewater treatment plant in Sweden.
Hanna Woksepp et al. Sci Total Environ 2023 5 163997 -
Genomic Diversity of Methicillin-Resistant Staphylococcus aureus CC398 Isolates Collected from Diseased Swine in the German National Resistance Monitoring Program GERM-Vet from 2007 to 2019.
Henrike Krüger-Haker et al. Microbiol Spectr 2023 5 e0077023 -
mcr-1 remains detectable in various Escherichia coli lineages isolated from healthy swine after withdrawal of colistin use on the farm.
Nobuki Yoshizawa et al. J Vet Med Sci 2023 4 (5) 536-540 -
Resistance and prevalence implications of doxycycline post-exposure prophylaxis for gonorrhea prevention in men who have sex with men: a modeling study.
Emily Reichert et al. medRxiv 2023 5 -
Metagenomics-enabled reverse-genetics assembly and characterization of myotis bat morbillivirus.
Satoshi Ikegame et al. Nat Microbiol 2023 5 -
Two decades of molecular surveillance in Senegal reveal changes in known drug resistance mutations associated with historical drug use and seasonal malaria chemoprevention.
Yaye Die Ndiaye et al. medRxiv 2023 5
DETECTION / DIAGNOSIS
-
High-resolution characterization of short-term temporal variability in the taxonomic and resistome composition of wastewater influent.
Kevin K Chau et al. Microb Genom 2023 5 (5) -
Identification by High-Throughput Real-Time PCR of 30 Major Circulating Listeria monocytogenes Clonal Complexes in Europe.
Benjamin Félix et al. Microbiol Spectr 2023 5 e0395422 -
Evaluation of Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry for Molecular Typing of Acinetobacter baumannii in Comparison with Orthogonal Methods.
Eloise J Busby et al. Microbiol Spectr 2023 5 e0499522 -
Efficient SARS-CoV-2 Surveillance during the Pandemic-Endemic Transition Using PCR-Based Genotyping Assays.
Lianne Koets et al. Microbiol Spectr 2023 5 e0345022 -
Wastewater Genomic Surveillance Captures Early Detection of Omicron in Utah.
Pooja Gupta et al. Microbiol Spectr 2023 5 (3) e0039123 -
SARS-CoV-2 viral variants can rapidly be identified for clinical decision making and population surveillance using a high-throughput digital droplet PCR assay.
Olivier Pernet et al. Sci Rep 2023 5 (1) 7612 -
Lone star ticks (Acari: Ixodidae) infected with Bourbon virus in New Jersey, USA.
Andrea Egizi et al. J Med Entomol 2023 5 -
Progress Toward Poliomyelitis Eradication — Worldwide, January 2021–March 2023
Lee SE, et al. MMWR, May 12, 2023. -
Global mpox lineage discovery and rapid outbreak tracking with nanopore sequencing.
Michael S Bosmeny et al. Virol J 2023 5 (1) 90
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
-
Investigation of a Staphylococcus aureus sequence type 72 food poisoning outbreak associated with food-handler contamination in Italy.
Federica Savini et al. Zoonoses Public Health 2023 5 -
Combining epidemiological data and whole genome sequencing to understand SARS-CoV-2 transmission dynamics in a large tertiary care hospital during the first COVID-19 wave in The Netherlands focusing on healthcare workers.
Cynthia P Haanappel et al. Antimicrob Resist Infect Control 2023 5 (1) 46 -
Phylodynamics of SARS-CoV-2 in France, Europe, and the world in 2020.
Romain Coppée et al. Elife 2023 5
HOST-MICROBE INTERACTIONS
-
Gene expression in cord blood and tuberculosis in early childhood: A nested case-control study in a South African birth cohort.
Carly A Bobak et al. Clin Infect Dis 2023 5 -
Predicting pediatric TB: the need for age-specific host biosignatures.
Sara Suliman et al. Clin Infect Dis 2023 5
![Brand](/GAPPKB/images/CDC_author.jpg)
![Brand](/GAPPKB/images/implementation.jpg)
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2024
- Page last updated:Sep 5, 2024