Advanced Molecular Detection Clips Content (Published on 04/13/2017)
NEWS
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Asymptomatic Ebola infection rare despite high exposure
Healio, Apr 4, 2017. -
Ebola Genomes Help Reconstruct Virus' Spread During West African Outbreak
Curtin C. GenomeWeb, Apr 12, 2017. -
The number of new flu viruses is increasing, and could lead to a pandemic
MacIntyre CR, et al. The Conversation, Apr 4, 2017. -
Genetic study reveals how hepatitis C interacts with humans
MedicalExpress, Apr 11, 2017. -
Purdue Researchers Developing Viral Biosensor With Paper-Based Sample Prep
Johnson M. GenomeWeb, Mar 29, 2017. -
FDA Authorizes Nanobiosym Zika Test
GenomeWeb, Apr 11, 2017. -
Rapid test shows mixed results for respiratory infections
Dall C. CIDRAP, Apr 7, 2017. -
Illumina Partners With Human Vaccines Project
GenomeWeb, Apr 11, 2017. -
New giant viruses suggest their genomes expanded like an accordion
Timmer J. Ars Technica, Apr 7, 2017. -
The Lung Microbiome: Key to Respiratory Ills?
Lyon J. JAMA, April 12, 2017.
CONCEPTS / COMMENTS
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Evolve and survive.
Pance Alena et al. Nature reviews. Microbiology 2017 Mar -
Reducing diagnostic uncertainty to improve treatment of respiratory infections
Pavia AT. Lancet Resp Med, Apr 6, 2017. -
Should biomedical research be like Airbnb?
Bonazzi Vivien R et al. PLoS biology 2017 Apr (4) e2001818 -
Careers in Virology: Working at the Centers for Disease Control and Prevention.
Konopka-Anstadt Jennifer L et al. Journal of virology 2017 Feb
METHODS / TOOLS
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The impact of culturomics on taxonomy in clinical microbiology.
Abdallah Rita Abou et al. Antonie van Leeuwenhoek 2017 Apr -
De novo assembly of microbial genomes from human gut metagenomes using barcoded short read sequences
Moss E, et al. bioRxiv, Apr 7, 2017. -
De novo assembly of viral quasispecies using overlap graphs.
Baaijens Jasmijn A et al. Genome research 2017 Apr -
Nucleic acid detection with CRISPR-Cas13a/C2c2
Gootenberg JS, et al. Science, Apr 13, 2017. -
Accurate predictions of population-level changes in sequence and structural properties of HIV-1 Env using a volatility-controlled diffusion model.
DeLeon Orlando et al. PLoS biology 2017 Apr (4) e2001549
EVOLUTION / ECOLOGY / POPULATIONS
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Whole genome sequencing of Brucella melitensis isolated from 57 patients in Germany reveals high diversity in strains from Middle East.
Georgi Enrico et al. PloS one 2017 (4) e0175425 -
Vibrio parahaemolyticus O4:K8 forms a potential predominant clone in southern China as detected by whole-genome sequence analysis.
Li Baisheng et al. International journal of food microbiology 2017 Mar 90-95 -
Molecular analysis and species diversity of Nocardia in the hospital environment in a developing country, a potential health hazard.
Rahdar Hossein Ali et al. Journal of medical microbiology 2017 Mar (3) 334-341 -
Genomic analyses of the ancestral Manila family of Mycobacterium tuberculosis.
Xuehua Wan et al. PLoS One 2017 4 (4) e0175330 -
Genotype-specific evolution of hepatitis E virus.
Brayne Adam B et al. Journal of virology 2017 Feb -
Discovery and genetic analysis of novel coronaviruses in least horseshoe bats in southwestern China.
Wang Lihua et al. Emerging microbes & infections 2017 Mar (3) e14 -
Group A rotaviruses in Chinese bats: genetic composition, serology and evidence for bat-to-human transmission and reassortment.
He Biao et al. Journal of virology 2017 Apr
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Virulence and Genomic Feature of a Virulent Klebsiella pneumoniae Sequence Type 14 Strain of Serotype K2 Harboring blaNDM-5 in China.
Mei Yan-Fang et al. Frontiers in microbiology 2017 335 -
Zika virus genome biology and molecular pathogenesis.
Wang Anyou et al. Emerging microbes & infections 2017 Mar (3) e13 -
Virulence of the zoonotic agent of leptospirosis: still terra incognita?
Picardeau Mathieu et al. Nature reviews. Microbiology 2017 May (5) 297-307 -
Low Pathogenic Influenza A Viruses in North American Diving Ducks Contribute to the Emergence of a Novel Highly Pathogenic Influenza A(H7N8) Virus.
Xu Yifei et al. Journal of virology 2017 Feb -
Tuberculosis resistance-conferring mutations with fitness cost among HIV-positive individuals in Uganda.
Ssengooba W et al. The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease 2017 May (5) 531-536 -
Sequencing and comparative genomics analysis of the IncHI2 plasmids pT5282-mphA and p112298-catA and the IncHI5 plasmid pYNKP001-dfrA.
Liang Quanhui et al. International journal of antimicrobial agents 2017 Apr -
Evidence for the evolutionary steps leading to mecA-mediated β-lactam resistance in staphylococci.
Rolo Joana et al. PLoS genetics 2017 Apr (4) e1006674 -
The recent emergence in hospitals of multidrug-resistant community-associated sequence type 1 and spa type t127 methicillin-resistant Staphylococcus aureus investigated by whole-genome sequencing: Implications for screening.
Earls Megan R et al. PloS one 2017 (4) e0175542 -
Antibiotic Resistance Markers in Strain Bp1651 of Burkholderia pseudomallei Identified by Genome Sequence Analysis.
Bugrysheva Julia V et al. Antimicrobial agents and chemotherapy 2017 Apr
DETECTION / DIAGNOSIS
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Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry for the identification of Burkholderia pseudomallei from Asia and Australia and differentiation between Burkholderia species.
Suttisunhakul Vichaya et al. PloS one 2017 (4) e0175294 -
Evaluation of applicability of DNA microarray-based characterization of bovine Shiga toxin-producing Escherichia coli isolates using whole genome sequence analysis.
Barth Stefanie A et al. Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc 2017 Apr 1040638717700689 -
A rapid typing method for Listeria monocytogenes based on high-throughput multilocus sequence typing (Hi-MLST).
Takahashi Hajime et al. International journal of food microbiology 2017 Feb 84-89 -
Whole genome sequencing of Shigella sonnei through PulseNet Latin America and Caribbean: advancing global surveillance of foodborne illnesses.
Baker Kate Susan et al. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2017 Apr -
Genetic stability and evolution of sigB allele used for Listeria sensu stricto subtyping and phylogenetic inference.
Liao Jingqiu et al. Applied and environmental microbiology 2017 Apr -
Rapid molecular diagnosis of the Mycobacterium tuberculosis Rangipo strain responsible for the largest recurring TB cluster in New Zealand.
Mulholland Claire V et al. Diagnostic microbiology and infectious disease 2017 Mar -
Routine molecular point-of-care testing for respiratory viruses in adults presenting to hospital with acute respiratory illness (ResPOC): a pragmatic, open-label, randomised controlled trial
Brendish NJ, et al. Lancet Resp Med, Apr 6, 2017. -
A universal primer-independent next-generation sequencing approach for investigations of norovirus outbreaks and novel variants.
Fonager Jannik et al. Scientific reports 2017 Apr (1) 813 -
Vector soup: high-throughput identification of Neotropical phlebotomine sand flies using metabarcoding.
Kocher Arthur et al. Molecular ecology resources 2017 Mar (2) 172-182
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Cluster of fatal group A streptococcal emm87 infection within a single family: molecular basis for invasion and transmission.
Flores Anthony R et al. The Journal of infectious diseases 2017 Apr -
Virus genomes reveal factors that spread and sustained the Ebola epidemic
Dudas G, et al. Nature, Apr 12, 2017.
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Genomic sequencing of Neisseria gonorrhoeae to respond to the urgent threat of antimicrobial-resistant gonorrhea.
Abrams A Jeanine et al. Pathogens and disease 2017 Apr
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Malaria Genomics in the Era of Eradication.
Neafsey Daniel E et al. Cold Spring Harbor perspectives in medicine 2017 Apr -
Surveillance Systems to Track Progress Toward Polio Eradication - Worldwide, 2015-2016.
Maes Edmond F et al. MMWR. Morbidity and mortality weekly report 2017 Apr (13) 359-365
HOST-MICROBE INTERACTIONS
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Living in an adaptive world: Genomic dissection of the genus Homo and its immune response.
Quach Hélène et al. The Journal of experimental medicine 2017 Apr (4) 877-894 -
Genome-to-genome analysis highlights the effect of the human innate and adaptive immune systems on the hepatitis C virus.
Ansari M Azim et al. Nature genetics 2017 Apr -
Viral and host factors associated with outcomes of hepatitis C virus infection (Review).
Yan Zehui et al. Molecular medicine reports 2017 Mar -
Longitudinal peripheral blood transcriptional analysis of a patient with severe Ebola virus disease
Kash JC, et al. Sci Transl Med, Apr 12, 2017. -
The microbiota of the respiratory tract: gatekeeper to respiratory health.
Man Wing Ho et al. Nature reviews. Microbiology 2017 May (5) 259-270
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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