Advanced Molecular Detection Clips Content (Published on 04/27/2023)
NEWS
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Q&A: Chronicling the failures of the U.S. response to Covid
Branswell H. STAT, Apr 24, 2023. -
Before resistance developed, monoclonal antibodies were highly effective in preventing severe COVID-19
Soucheray S. CIDRAP, Apr 25, 2023. -
How small vaccine stockpiles can stop outbreaks of infectious disease from becoming big
Berkley S. STAT, Apr 24, 2023. -
Scientists identify thousands of unknown viruses in babies’ diapers
Blakemore E. Washington Post, Apr 23, 2023. -
A genome project cracks mysteries of evolution — and Balto the superdog
Johnson M, Grandoni D. Washington Post, Apr 27, 2023.
CONCEPTS / COMMENTS
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Mainstreaming Wastewater Surveillance for Infectious Disease.
Michelle M Mello et al. N Engl J Med 2023 4 (16) 1441-1444 -
Taking hospital pathogen surveillance to the next level.
Guido Werner et al. Microb Genom 2023 4 (4) -
Role of Spillover and Spillback in SARS-CoV-2 Transmission and the Importance of One Health in Understanding the Dynamics of the COVID-19 Pandemic.
McKenzie N Sparrer et al. J Clin Microbiol 2023 4 e0161022 -
A Critical Analysis of the Evidence for the SARS-CoV-2 Origin Hypotheses.
James C Alwine et al. mSphere 2023 3 (2) e0011923
METHODS / TOOLS
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Gauge your phage: benchmarking of bacteriophage identification tools in metagenomic sequencing data.
Siu Fung Stanley Ho et al. Microbiome (1) 84 -
Scanning barcodes: A way to explore viral populations.
Emily A Fitzmeyer et al. PLoS Pathog 2023 4 (4) e1011291 -
Reads2Vec: Efficient Embedding of Raw High-Throughput Sequencing Reads Data.
Prakash Chourasia et al. J Comput Biol 2023 2 (4) 469-491 -
HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2.
Matteo Chiara et al. Commun Biol 2023 4 (1) 443 -
Analysis of the ARTIC V4 and V4.1 SARS-CoV-2 primers and their impact on the detection of Omicron BA.1 and BA.2 lineage-defining mutations.
Fatima R Ulhuq et al. Microb Genom 2023 4 (4) -
Insights from a Rapidly Implemented COVID-19 Biobank Using Electronic Consent and Informatics Tools.
Emily F Higgs et al. Biopreserv Biobank 2022 6 (2) 166-175 -
Evaluation of miniaturized Illumina DNA preparation protocols for SARS-CoV-2 whole genome sequencing.
Sureshnee Pillay et al. PLoS One 2023 4 (4) e0283219 -
Dynamic Epidemiological Networks: A Data Representation Framework for Modeling and Tracking of SARS-CoV-2 Variants.
Fiona Senchyna et al. J Comput Biol 2023 4 (4) 446-468 -
Characterizing SARS-CoV-2 Spike Sequences Based on Geographical Location.
Sarwan Ali et al. J Comput Biol 2023 1 (4) 432-445
EVOLUTION / ECOLOGY / POPULATIONS
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A global genomic perspective on the multidrug-resistant Streptococcus pneumoniae 15A-CC63 sub-lineage following pneumococcal conjugate vaccine introduction.
Paulina A Hawkins et al. Microb Genom (4) -
Extensive genome analysis identifies novel plasmid families in Clostridium perfringens.
Emily L Gulliver et al. Microb Genom (4) -
New insights into the epidemiology of Listeria monocytogenes - A cross-sectoral retrospective genomic analysis in the Netherlands (2010-2020).
Claudia E Coipan et al. Front Microbiol 1147137 -
Phylogenomics of Globally Spread Clonal Groups 14 and 15 of Klebsiella pneumoniae.
Carla Rodrigues et al. Microbiol Spectr 2023 4 e0339522 -
A multiomic approach to defining the essential genome of the globally important pathogen Corynebacterium diphtheriae.
Emily C A Goodall et al. PLoS Genet 2023 4 (4) e1010737 -
Public health implications of Yersinia enterocolitica investigation: an ecological modeling and molecular epidemiology study.
Yuan Yue et al. Infect Dis Poverty 2023 4 (1) 41 -
Phylogeographic analysis of dengue virus serotype 1 and Cosmopolitan serotype 2 in Africa.
Selhorst Philippe et al. Int J Infect Dis 2023 4 -
Cryptic SARS-CoV-2 lineage identified on two mink farms as a possible result of long-term undetected circulation in an unknown animal reservoir, Poland, November 2022 to January 2023.
Katarzyna Domanska-Blicharz et al. Euro Surveill 2023 4 (16) -
Rotavirus infections and their genotype distribution in Rwanda before and after the introduction of rotavirus vaccination.
Jean-Claude Kabayiza et al. PLoS One 2023 4 (4) e0284934 -
Marburg virus in Egyptian Rousettus bats in Guinea: Investigation of Marburg virus outbreak origin in 2021.
Marat T Makenov et al. PLoS Negl Trop Dis 2023 4 (4) e0011279 -
Molecular Characterization and Phylogenetic Analysis of Dengue Fever Viruses in Three Outbreaks in Tanzania Between 2017 and 2019.
Maria Ezekiely Kelly et al. PLoS Negl Trop Dis 2023 4 (4) e0011289
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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A Nationwide Genomic Study of Clinical Klebsiella pneumoniae Carrying bla and rmtF in China.
Siquan Shen et al. Microbiol Spectr 2023 4 e0386322 -
Polyclonal Spread of Fosfomycin Resistance among Carbapenemase-Producing Members of the Enterobacterales in the Czech Republic.
V Mattioni Marchetti et al. Microbiol Spectr 2023 4 e0009523 -
Exploration of the diversity of multi-drug resistant Mycobacterium tuberculosis complex in Lagos, Nigeria using WGS: Distribution of lineages, drug resistance patterns and genetic mutations.
Mohd Nur Fakhruzzaman Noorizhab et al. Tuberculosis (Edinb) 102343 -
Genomic bacterial load associated with bacterial genotypes and clinical characteristics in patients with scrub typhus in Hainan Island, Southern China.
Gaoyu Wang et al. PLoS Negl Trop Dis 2023 4 (4) e0011243 -
The possible impact of novel mutations in human papillomavirus 52 on the infection characteristics.
Yingxin Gong et al. Microb Genom 2023 4 (4) -
Andes Virus Genome Mutations That Are Likely Associated with Animal Model Attenuation and Human Person-to-Person Transmission.
Carla M Bellomo et al. mSphere 2023 4 e0001823 -
Drug Resistance Molecular Markers of Plasmodium falciparum and Severity of Malaria in Febrile Children in the Sentinel Site for Malaria Surveillance of Melen in Gabon: Additional Data from the Plasmodium Diversity Network African Network.
Jacques Mari Ndong Ngomo et al. Trop Med Infect Dis 2023 4 (4)
DETECTION / DIAGNOSIS
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A novel repeat sequence-based PCR (rep-PCR) using specific repeat sequences of Mycobacterium intracellulare as a DNA fingerprinting.
Jeong-Ih Shin et al. Front Microbiol 1161194 -
Wastewater surveillance of SARS-CoV-2 genomic populations on a country-wide scale through targeted sequencing.
Florencia Cancela et al. PLoS One 2023 4 (4) e0284483 -
Amplification-Free COVID-19 Detection by Digital Droplet REVEALR.
Kefan Yang et al. ACS Synth Biol 2023 3 (4) 1331-1338 -
Utilizing river and wastewater as a SARS-CoV-2 surveillance tool to predict trends and identify variants of concern in settings with limited formal sewage systems.
Kayla Barnes et al. Res Sq 2023 4 -
Development and Validation of TaqMan Chemistry Probe-Based Rapid Assay for the Detection of Echinocandin-Resistance in Candida auris.
YanChun Zhu et al. J Clin Microbiol 2023 3 (4) e0176722 -
A ring trial to harmonize Toxoplasma gondii microsatellite typing: comparative analysis of results and recommendations for optimization.
M Joeres et al. Eur J Clin Microbiol Infect Dis 2023 4 -
Tracking antimalarial drug resistance using mosquito blood meals: a cross-sectional study.
Hanna Y Ehrlich et al. Lancet Microbe 2023 4
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Limited Nosocomial Transmission of Drug-Resistant Tuberculosis, Moldova.
Ecaterina Noroc et al. Emerg Infect Dis (5) 1046-1050 -
Severe Streptococcus equi Subspecies zooepidemicus Outbreak from Unpasteurized Dairy Product Consumption, Italy.
Serena Bosica et al. Emerg Infect Dis (5) 1020-1024 -
Use of High-Resolution Geospatial and Genomic Data to Characterize Recent Tuberculosis Transmission, Botswana.
Chelsea R Baker et al. Emerg Infect Dis (5) 977-987 -
An overview of tuberculosis outbreaks reported in the years 2011-2020.
Lidia Zukowska et al. BMC Infect Dis (1) 253 -
Genomic epidemiology and transmission characteristics of mcr1-positive colistin-resistant Escherichia coli strains circulating at natural environment.
Xinjun Hu et al. Sci Total Environ 163600 -
Genomic Analyses of a Fungemia Outbreak Caused by Lodderomyces elongisporus in a Neonatal Intensive Care Unit in Delhi, India.
Anamika Yadav et al. mBio 2023 4 e0063623 -
Pseudo-outbreak of Mycobacterium lentiflavum at a general hospital in Japan.
Yutaro Nagano et al. Infect Control Hosp Epidemiol 2023 4 1-7 -
SARS-CoV-2 Outbreak Investigation Using Contact Tracing and Whole-Genome Sequencing in an Ontario Tertiary Care Hospital.
Kara K Tsang et al. Microbiol Spectr 2023 4 e0190022 -
A systematic outbreak investigation of SARS-CoV-2 transmission clusters in a tertiary academic care center.
Matthias von Rotz et al. Antimicrob Resist Infect Control 2023 4 (1) 38 -
Variant-specific introduction and dispersal dynamics of SARS-CoV-2 in New York City-from Alpha to Omicron.
Simon Dellicour et al. PLoS Pathog 2023 4 (4) e1011348 -
Phylogenetic Analysis of Transmission Dynamics of Dengue in Large and Small Population Centers, Northern Ecuador.
Sully Márquez et al. Emerg Infect Dis 2023 4 (5) 888-897 -
Whole-genome sequencing confirms a persistent candidaemia clonal outbreak due to multidrug-resistant Candida parapsilosis.
Farnaz Daneshnia et al. J Antimicrob Chemother 2023 4
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Effectiveness of COVID-19 mRNA Vaccines in Preventing COVID-19-Associated Outpatient Visits and Hospitalizations Among American Indian and Alaska Native Persons, January-November 2021: A Test-Negative Case-Control Analysis Using Surveillance Data.
Chelsea S Lutz et al. Open Forum Infect Dis (4) ofad172 -
Toward a Pan-SARS-CoV-2 vaccine targeting conserved epitopes on spike and non-spike proteins for potent, broad and durable immune responses.
Chang Yi Wang et al. PLoS Pathog 2023 4 (4) e1010870 -
A replicon RNA vaccine can induce durable protective immunity from SARS-CoV-2 in nonhuman primates after neutralizing antibodies have waned.
Megan A O'Connor et al. PLoS Pathog 2023 4 (4) e1011298 -
An optimized messenger RNA vaccine candidate protects non-human primates from Zika virus infection.
Brooke Bollman et al. NPJ Vaccines 2023 4 (1) 58
HOST-MICROBE INTERACTIONS
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Association of long-term exposure to ambient PM and its constituents with gut microbiota: Evidence from a China cohort.
Sicheng Li et al. Sci Total Environ 163577 -
Kernel-based genetic association analysis for microbiome phenotypes identifies host genetic drivers of beta-diversity.
Hongjiao Liu et al. Microbiome (1) 80
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Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:Sep 5, 2024