Advanced Molecular Detection Clips Content (Published on 04/20/2017)
NEWS
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The world's assault on tropical diseases is working
Branswell H. STAT, Apr 18, 2017. -
Human Immunome Program to Push Informatics Boundaries
Versel N. GenomeWeb, Apr 18, 2017. -
Why A Central Square Stool Bank Is Paying $40 Per Poop Donation
Emanuel G. WGBH, April 13, 2017.
EVENTS / TRAINING / WEB RESOURCES
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21st International BioInformatics Workshop on Virus Evolution and Molecular Epidemiology
(abstracts) Virus Evol (2017) 3 (suppl_1): S1-S19.
CONCEPTS / COMMENTS
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The impact of insertion sequences on bacterial genome plasticity and adaptability.
Vandecraen Joachim et al. Critical reviews in microbiology 2017 Apr 1-22 -
The Transcription Terminator Rho: A First Bacterial Prion.
Pallarès Irantzu et al. Trends in microbiology 2017 Apr -
Short-Sighted Virus Evolution and a Germline Hypothesis for Chronic Viral Infections.
Lythgoe Katrina A et al. Trends in microbiology 2017 Apr
METHODS / TOOLS
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Ten simple rules for making research software more robust.
Taschuk Morgan et al. PLoS computational biology 2017 Apr (4) e1005412 -
Utilization of defined microbial communities enables effective evaluation of meta-genomic assemblies.
Greenwald William W et al. BMC genomics 2017 Apr (1) 296 -
U50: A New Metric for Measuring Assembly Output Based on Non-Overlapping, Target-Specific Contigs.
Castro Christina J et al. Journal of computational biology : a journal of computational molecular cell biology 2017 Apr -
Assessing the Impact of Assemblers on Virus Detection in a De Novo Metagenomic Analysis Pipeline.
White Daniel J et al. Journal of computational biology : a journal of computational molecular cell biology 2017 Apr -
Infectious Disease Dynamics Inferred from Genetic Data via Sequential Monte Carlo.
Smith R A et al. Molecular biology and evolution 2017 Apr -
Targeted Enrichment and Sequencing of Recent Endosymbiont-Host Lateral Gene Transfers.
Dunning Hotopp Julie C et al. Scientific reports 2017 Apr (1) 857
EVOLUTION / ECOLOGY / POPULATIONS
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Comprehensive bioinformatics analysis of Mycoplasma pneumoniae genomes to investigate underlying population structure and type-specific determinants.
Diaz Maureen H et al. PloS one 2017 (4) e0174701 -
The within-host population dynamics of Mycobacterium tuberculosis vary with treatment efficacy
Trauner A, et al. Genome Biol, Apr 19, 2017. -
Progenitor strain introduction of Mycobacterium bovis at the wildlife-livestock interface can lead to clonal expansion of the disease in a single ecosystem.
Dippenaar Anzaan et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Apr -
High levels of local inter- and intra-host genetic variation of West Nile virus and evidence of fine-scale evolutionary pressures.
Dylan J Ehrbar et al. Infect Genet Evol 2017 4 219-226 -
Detection of potentially novel paramyxovirus and coronavirus viral RNA in bats and rats in the Mekong Delta region of southern Viet Nam.
Berto A et al. Zoonoses and public health 2017 Apr -
Genomics and Comparative Genomic Analyses Provide Insight into the Taxonomy and Pathogenic Potential of Novel Emmonsia Pathogens.
Yang Ying et al. Frontiers in cellular and infection microbiology 2017 105
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Multidrug-resistant bacteria compensate for the epistasis between resistances.
Moura de Sousa Jorge et al. PLoS biology 2017 Apr (4) e2001741 -
An Update on Antimicrobial Resistance in Clostridium difficile: Resistance Mechanisms and Antimicrobial Susceptibility Testing.
Peng Zhong et al. Journal of clinical microbiology 2017 Apr -
Genetic makeup of Shiga toxin-producing Escherichia coli in relation to clinical symptoms and duration of shedding: a microarray analysis of isolates from Swedish children.
Matussek A et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2017 Apr -
Antimicrobial resistance in Mycobacterium tuberculosis: mechanistic and evolutionary perspectives.
Gygli Sebastian M et al. FEMS microbiology reviews 2017 Mar -
Increased Tuberculosis Patient Mortality Associated with Mycobacterium tuberculosis Mutations Conferring Resistance to Second-line Antituberculous Drugs.
Georghiou Sophia B et al. Journal of clinical microbiology 2017 Apr -
Non pncA gene-mutated but pyrazinamide resistant M. tuberculosis, why is that?
Werngren Jim et al. Journal of clinical microbiology 2017 Apr -
SMRT genome assembly corrects reference errors, resolving the genetic basis of virulence in Mycobacterium tuberculosis.
Elghraoui Afif et al. BMC genomics 2017 Apr (1) 302
DETECTION / DIAGNOSIS
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Nucleic acid detection with CRISPR-Cas13a/C2c2.
Gootenberg Jonathan S et al. Science (New York, N.Y.) 2017 Apr -
Direct detection of extended-spectrum beta-lactamases (CTX-M) from blood cultures by LC-MS/MS bottom-up proteomics.
Fleurbaaij F et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2017 Apr -
Evaluation of TaqMan Array Card (TAC) for the Detection of Central Nervous System Infections in Kenya.
Onyango Clayton O et al. Journal of clinical microbiology 2017 Apr -
High Resolution Melting Analysis for the Rapid Detection of Sequence Type 131 Escherichia coli.
Harrison Lucas B et al. Antimicrobial agents and chemotherapy 2017 Apr -
Study of Streptococcus thermophilus population on a world-wide and historical collection by a new MLST scheme.
Delorme Christine et al. International journal of food microbiology 2017 Feb 70-81 -
Incidence and Trends of Infections with Pathogens Transmitted Commonly Through Food and the Effect of Increasing Use of Culture-Independent Diagnostic Tests on Surveillance - Foodborne Diseases Active Surveillance Network, 10 U.S. Sites, 2013-2016.
Marder Ellyn P et al. MMWR. Morbidity and mortality weekly report 2017 Apr (15) 397-403 -
Rapid detection and quantification of Ebola Zaire virus by one-step real-time quantitative reverse transcription-polymerase chain reaction.
Ro Young-Tae et al. Microbiology and immunology 2017 Apr (3-4) 130-137 -
Autochthonous Japanese Encephalitis with Yellow Fever Coinfection in Africa
Simon-Loriere E, et al. New Engl J Med, Apr 13, 2017. -
Simple detection of single nucleotide polymorphism in Plasmodium falciparum by SNP-LAMP assay combined with lateral flow dipstick.
Yongkiettrakul Suganya et al. Parasitology international 2017 Feb (1) 964-971 -
High resolution melting: a useful field-deployable method to measure dhfr and dhps drug resistance in both highly and lowly endemic Plasmodium populations.
Ndiaye Yaye Dié et al. Malaria journal 2017 Apr (1) 153
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Comparison of Whole-Genome Sequencing Methods for Analysis of Three Methicillin-Resistant Staphylococcus aureus Outbreaks.
Scott A Cunningham et al. J Clin Microbiol 2017 4 (6) 1946-1953 -
Genomic Characterization of USA300 MRSA to Evaluate Intraclass Transmission and Recurrence of SSTI among High Risk Military Trainees.
Millar Eugene V et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 Apr -
Virus genomes reveal factors that spread and sustained the Ebola epidemic.
Dudas Gytis et al. Nature 2017 Apr (7650) 309-315
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Use of organism identification by 16S ribosomal RNA polymerase chain reaction to shorten antimicrobial length of therapy.
Gilbert Elise M et al. Diagnostic microbiology and infectious disease 2017 Mar -
Serogroup B Meningococcal Disease Vaccine Recommendations at a University, New Jersey, USA, 2016.
Soeters Heidi M et al. Emerging infectious diseases 2017 May (5) 867-869
HOST-MICROBE INTERACTIONS
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Salmonella Typhimurium Diarrhea Reveals Basic Principles of Enteropathogen Infection and Disease-Promoted DNA Exchange.
Wotzka Sandra Y et al. Cell host & microbe 2017 Apr (4) 443-454 -
Epigenetic Landscape during Coronavirus Infection.
Schäfer Alexandra et al. Pathogens (Basel, Switzerland) 2017 Feb (1) -
Diagnosis of Bacterial Infection Using a 2-Transcript Host RNA Signature in Febrile Infants 60 Days or Younger.
Kaforou Myrsini et al. JAMA 2017 Apr (15) 1577-1578 -
Cooccurrences of Putative Endogenous Retrovirus-Associated Diseases.
Brütting Christine et al. BioMed research international 2017 7973165 -
The Molecular Revolution in Cutaneous Biology: Investigating the Skin Microbiome.
Kong Heidi H et al. The Journal of investigative dermatology 2017 May (5) e119-e122 -
The ovarian cancer oncobiome.
Banerjee Sagarika et al. Oncotarget 2017 Mar -
Relationships between gut microbiota, plasma metabolites, and metabolic syndrome traits in the METSIM cohort.
Org Elin et al. Genome biology 2017 Apr (1) 70
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Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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