Advanced Molecular Detection Clips Content (Published on 04/04/2024)
NEWS
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Sequencing Surveillance Improves Outbreak Detection in Hospital at 'Affordable' Costs
Zhang H. GenomeWeb, Mar 28, 2024. -
Wastewater testing near homeless camps shows COVID-19 viral mutations
Soucheray S. CIDRAP, Apr 3, 2024. -
CDC sequencing of H5N1 avian flu samples from patient yields new clinical clues
Schnirring L. CIDRAP, Apr 3, 2024. -
Tests confirm avian flu on New Mexico dairy farm; probe finds cats positive
Schnirring L. CIDRAP, Apr 2, 2024. -
In a first, FDA authorizes AI-driven test to predict sepsis in hospitals
Gilbert D, Roubein R. Washington Post, Apr 3 2024. -
Early data from rare-disease trial put spotlight on Moderna’s efforts to turn mRNA into medicines
Joseph A. STAT, Apr 3, 2024. -
Gut bacteria break down cholesterol — hinting at probiotic treatments
Nowogrodski J. Nature, Apr 2, 2024.
CONCEPTS / COMMENTS
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Approaching toxigenic Clostridia from a one health perspective.
Laura M Cersosimo et al. Anaerobe 2024 3 102839 -
An evolution of Nanopore next-generation sequencing technology: implications for medical microbiology and public health.
Heba H Mostafa et al. J Clin Microbiol 2024 4 e0024624
METHODS / TOOLS
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Human intestinal enteroids platform to assess the infectivity of gastroenteritis viruses in wastewater.
Noelia Carmona-Vicente et al. Water Res 2024 3 121481 -
OCTOPUS: Disk-based, Multiplatform, Mobile-friendly Metagenomics Classifier.
Simone Marini et al. bioRxiv 2024 4
EVOLUTION / ECOLOGY / POPULATIONS
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Increase in invasive Streptococcus pyogenes M1 infections with close evolutionary genetic relationship, Iceland and Scotland, 2022 to 2023.
Stephen B Beres et al. Euro Surveill 2024 3 (13) -
Genomic analysis of Salmonella isolated from canal water in Bangkok, Thailand.
Jirachaya Toyting et al. Microbiol Spectr 2024 4 e0421623 -
Characterization of invasive Group B Streptococcus isolates from Western Australian infants, 2004-2020.
Ginger Hilpipre et al. J Med Microbiol 2024 4 (4) -
Role of SARS-CoV-2 mutations in the evolution of the COVID-19 pandemic.
Philippe Colson et al. J Infect 2024 4 106150 -
Immune System Deficiencies Do Not Alter SARS-CoV-2 Evolutionary Rate but Favour the Emergence of Mutations by Extending Viral Persistence.
Laura Manuto et al. Viruses 2024 3 (3) -
Increasing intra- and inter-subtype HIV diversity despite declining HIV incidence in Uganda.
Seungwon Kim et al. medRxiv 2024 4 -
Epidemiological and clinical insights into the enterovirus D68 upsurge in Europe 2021/22 and the emergence of novel B3-derived lineages, ENPEN multicentre study.
Margarida Pires Simoes et al. J Infect Dis 2024 3 -
Long-term co-circulation of multiple influenza A viruses in pigs, Guangxi, China.
Chongqiang Huang et al. Emerg Microbes Infect 2024 4 2337673 -
Pan-Enterovirus Characterization Reveals Cryptic Circulation of Clinically Relevant Subtypes in Arizona Wastewater.
Daryn E Erickson et al. medRxiv 2024 4 -
Link between Monkeypox Virus Genomes from Museum Specimens and 1965 Zoo Outbreak.
Michelle Hämmerle et al. Emerg Infect Dis 2024 3 (4) 816-818 -
Molecular epidemiology identifies the expansion of the DENV2 epidemic lineage from the French Caribbean Islands to French Guiana and mainland France, 2023 to 2024.
Raphaëlle Klitting et al. Euro Surveill 2024 3 (13)
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Estimation of country-specific tuberculosis resistance antibiograms using pathogen genomics and machine learning.
Avika Dixit et al. BMJ Glob Health 2024 3 (3) -
A One Health Perspective on Salmonella enterica Serovar Infantis, an Emerging Human Multidrug-Resistant Pathogen.
Jennifer Mattock et al. Emerg Infect Dis 2024 3 (4) 701-710 -
Nationwide genome surveillance of carbapenem-resistant Pseudomonas aeruginosa in Japan.
Hirokazu Yano et al. Antimicrob Agents Chemother 2024 4 e0166923
DETECTION / DIAGNOSIS
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Methods for cost-efficient, whole genome sequencing surveillance for enhanced detection of outbreaks in a hospital setting
Waggle KD, et al. medRxiv, Feb 20, 2024. -
Revealing the Genetic Diversity of Chinese Chlamydia trachomatis Strains Directly from Clinical Samples through Selective Whole-Genome Amplification.
Wentao Chen et al. J Infect Dis 2024 3 -
An isothermal CRISPR- based lateral flow assay for detection of Neisseria meningitidis.
Dao Thi Huyen et al. Ann Clin Microbiol Antimicrob 2024 3 (1) 28 -
Detection of SARS-COV-2 variants and their proportions in wastewater samples using next-generation sequencing in Finland.
Anssi Lipponen et al. Sci Rep 2024 4 (1) 7751 -
Environmental Surveillance of Flood Control Infrastructure Impacted by Unsheltered Individuals Leads to the Detection of SARS-CoV-2 and Novel Mutations in the Spike Gene
Harrington A, et al. Environ Sci Technol Lett. Apr 3, 2024. -
Genomic Surveillance of SARS-CoV-2 Sequence Variants at Universities in Southwest Idaho.
Jennifer R Chase et al. COVID 2024 3 (1) 23-37 -
Dynamics of viral DNA shedding and culture viral DNA positivity in different clinical samples collected during the 2022 mpox outbreak in Lombardy, Italy.
Antonio Piralla et al. Travel Med Infect Dis 2024 3 102698 -
Tracking diarrhea viruses and mpox virus using the wastewater surveillance network in Hong Kong.
Xiawan Zheng et al. Water Res 2024 3 121513 -
Nanopore sequencing in distinguishing between wild-type and vaccine strains of Varicella-Zoster virus.
Yuto Fukuda et al. Vaccine 2024 3
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Estimating the reproduction number and transmission heterogeneity from the size distribution of clusters of identical pathogen sequences.
Cécile Tran-Kiem et al. Proc Natl Acad Sci U S A 2024 4 (15) e2305299121 -
High HIV diversity, recombination, and superinfection revealed in a large outbreak among persons who inject drugs in Kentucky and Ohio, USA.
William M Switzer et al. Virus Evol 2024 3 (1) veae015 -
Integrating dynamical modeling and phylogeographic inference to characterize global influenza circulation.
Francesco Parino et al. medRxiv 2024 4
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Epitope(s) involving amino acids of the fusion loop of Japanese encephalitis virus envelope protein is(are) important to elicit protective immunity.
Yi-Chin Fan et al. J Virol 2024 3 e0177323 -
Prevalence of resistance-associated viral variants to the HIV-specific broadly neutralising antibody 10-1074 in a UK bNAb-naïve population.
Panagiota Zacharopoulou et al. Front Immunol 2024 4 1352123 -
Optimizing a linear 'Doggybone' DNA vaccine for influenza virus through the incorporation of DNA targeting sequences and neuraminidase antigen.
Robert F Cunliffe et al. Discov Immunol 2024 4 (1) kyad030
HOST-MICROBE INTERACTIONS
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A compendium of multi-omics data illuminating host responses to lethal human virus infections.
Amie J Eisfeld et al. Sci Data 2024 4 (1) 328 -
Networks of gut bacteria relate to cardiovascular disease in a multi-ethnic population: the HELIUS study.
Moritz V Warmbrunn et al. Cardiovasc Res 2024 1 (4) 372-384 -
Gut microbiome and metabolome profiling in Framingham heart study reveals cholesterol-metabolizing bacteria
Li C, et al. Cell, Apr 2, 2024.
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Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2024
- Page last updated:Sep 5, 2024