Advanced Molecular Detection Clips Content (Published on 03/01/2018)
Scientists find single letter of genetic code that makes African Salmonella so dangerous
ScienceDaily, Feb 27, 2018.
European surveillance shows high levels of drug resistance in zoonotic bacteria
Dall C. CIDRAP, Feb 27, 2018.
Promising HIV vaccines could stall without coordinated research
Maxmen A. Nature, Feb 27, 2018.
CONCEPTS / COMMENTS
A Universal Influenza Vaccine: The Strategic Plan for the National Institute of Allergy and Infectious Diseases
Erbelding EJ, et al. J Infect Dis, Feb 28, 2018.
Maternal sepsis in the era of genomic medicine.
Kouskouti C et al. Archives of gynecology and obstetrics 2018 Jan (1) 49-60
METHODS / TOOLS
Datasets2Tools, repository and search engine for bioinformatics datasets, tools and canned analyses.
Torre Denis et al. Scientific data 2018 Feb 180023
Epidemiological characteristics of human-infective RNA viruses.
Woolhouse Mark E J et al. Scientific data 2018 Feb 180017
EVOLUTION / ECOLOGY / POPULATIONS
Genomic epidemiology and population structure of Neisseria gonorrhoeae from remote highly endemic Western Australian populations.
Al Suwayyid Barakat A et al. BMC genomics 2018 Feb (1) 165
Are animals a source of Stenotrophomonas maltophilia in human infections? Contributions of a nationwide molecular study.
Jayol Aurélie et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2018 Feb
Hospital Epidemiology of Methicillin-Resistant Staphylococcus aureus in a Tertiary Care Hospital in Moshi, Tanzania, as Determined by Whole Genome Sequencing.
Kumburu Happiness H et al. BioMed research international 2018 2087693
New Lineage of Lassa Virus, Togo, 2016.
Whitmer Shannon L M et al. Emerging infectious diseases 2018 Mar (3) 599-602
Genomic and structural features of the yellow fever virus from the 2016-2017 Brazilian outbreak.
Gómez Mariela Martínez et al. The Journal of general virology 2018 Feb
Recombination in the rabies virus and other lyssaviruses.
Deviatkin Andrei A et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2018 Feb
Investigating zoonotic infection barriers to ape plasmodium parasites using faecal DNA analysis.
Loy Dorothy E et al. International journal for parasitology 2018 Feb
Human cystic echinococcosis in Turkey: a preliminary study on DNA polymorphisms of hydatid cysts removed from confirmed patients.
Orsten Serra et al. Parasitology research 2018 Feb
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
Comparative transcriptomics of multidrug-resistant Acinetobacter baumannii in response to antibiotic treatments.
Qin Hao et al. Scientific reports 2018 Feb (1) 3515
Role of a single noncoding nucleotide in the evolution of an epidemic African clade of Salmonella
Hammarlof DL, et al. Proc Nat Acad Sci, Feb 23, 2018.
Whole Sequences and Characteristics of mcr-1-Harboring Plasmids of Escherichia coli Strains Isolated from Livestock in South Korea.
Lee Ji-Young et al. Microbial drug resistance (Larchmont, N.Y.) 2018 Feb
Whole-Genome Analysis of Mycobacterium tuberculosis from Patients with Tuberculous Spondylitis, Russia.
Chernyaeva Ekaterina et al. Emerging infectious diseases 2018 Mar (3) 579-583
Genome Sequencing of Extended-Spectrum β-Lactamase (ESBL)-Producing Klebsiella pneumoniae Isolated from Pigs and Abattoir Workers in Cameroon.
Founou Luria L et al. Frontiers in microbiology 2018 188
SCC mec Finder, a Web-Based Tool for Typing of Staphylococcal Cassette Chromosome mec in Staphylococcus aureus Using Whole-Genome Sequence Data.
Kaya Hülya et al. mSphere (1)
rpoB gene mutations among Mycobacterium tuberculosis isolates from extrapulmonary sites.
Khosravi Azar Dokht et al. APMIS : acta pathologica, microbiologica, et immunologica Scandinavica 2018 Mar (3) 241-247
DETECTION / DIAGNOSIS
A coliform-targeted metagenomic method facilitating human exposure estimates to Escherichia coli-borne antibiotic resistance genes.
Leonard A F C et al. FEMS microbiology ecology 2018 Feb
Carbapenemase-producing Enterobacteriaceae in South Korea: a report from the National Laboratory Surveillance System.
Yoon Eun-Jeong et al. Future microbiology 2018 Feb
Comparison of a newly developed binary typing with ribotyping and multilocus sequence typing methods for Clostridium difficile.
Li Zhirong et al. Journal of microbiological methods 2018 Feb
Notes from the Field: Occupational Hazards Associated with Harvesting and Processing Cannabis - Washington, 2015-2016.
Victory Kerton R et al. MMWR. Morbidity and mortality weekly report 2018 Mar (8) 259-260
National molecular tracing network for foodborne disease surveillance in China
Li W, et al. Food Control 2018; 88(Jun):28-32.
Capsule Typing of Haemophilus influenzae by Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry 1 .
Månsson Viktor et al. Emerging infectious diseases 2018 Mar (3) 443-452
Identification and Characterization of Clostridium difficile Genotype ST37 by MALDI-TOF Mass Spectrometry.
Li Ruxin et al. Journal of clinical microbiology 2018 Feb
A Multiplexed RT-LAMP Assay for Detection of Group M HIV-1 in Plasma or Whole Blood.
Curtis Kelly A et al. Journal of virological methods 2018 Feb
Frequency of Nucleic Acid Amplification Test Positivity Among Men Who Have Sex With Men Returning for a Test-of-Cure Visit 7 to 30 Days After Treatment of Laboratory-Confirmed Neisseria gonorrhoeae Infection at 2 Public Sexual Health Clinics, New York City, 2013 to 2016.
Okah Ebiere et al. Sexually transmitted diseases 2018 Mar (3) 177-182
A new LAMP-based assay for the molecular diagnosis of toxoplasmosis: comparison with a proficient PCR assay.
Varlet-Marie Emmanuelle et al. International journal for parasitology 2018 Feb
Molecular diagnosis of Trypanosoma cruzi.
Schijman Alejandro G et al. Acta tropica 2018 Feb
Major Threat to Malaria Control Programs by Plasmodium falciparum Lacking Histidine-Rich Protein 2, Eritrea.
Berhane Araia et al. Emerging infectious diseases 2018 Mar (3) 462-470
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
Farm-to-fork investigation of an outbreak of Shiga toxin-producing Escherichia coli O157.
Wilson Deborah et al. Microbial genomics 2018 Feb
Statistical Method to Detect Tuberculosis Outbreaks among Endemic Clusters in a Low-Incidence Setting.
Althomsons Sandy P et al. Emerging infectious diseases 2018 Mar (3) 573-575
ANTIMICROBIALS / VACCINES / INTERVENTIONS
Genome-scale metabolic models as platforms for identification of novel genes as antimicrobial drug targets.
Mienda Bashir Sajo et al. Future microbiology 2018 Feb
Mini-review on CRISPR-Cas9 and its potential applications to help controlling neglected tropical diseases caused by Trypanosomatidae.
Minet Cécile et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2018 Feb
Environment dominates over host genetics in shaping human gut microbiota.
Rothschild Daphna et al. Nature 2018 Feb
Metagenomic Characterization of the Human Intestinal Microbiota in Fecal Samples from STEC-Infected Patients.
Gigliucci Federica et al. Frontiers in cellular and infection microbiology 2018 25
Human genetics of infectious diseases: Unique insights into immunological redundancy.
Casanova Jean-Laurent et al. Seminars in immunology 2017 Dec
Importance of common TLR2 genetic variants on clinical phenotypes and risk in tuberculosis disease in a Western Chinese population.
Zhang Jingwei et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2018 Feb
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