Advanced Molecular Detection Clips Content (Published on 03/21/2024)
NEWS
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A treaty to prepare the world for the next pandemic hangs in the balance
Cohen J. Science, Mar 15, 2024. -
Report: $46 billion US investment in global health generates 'blockbuster returns'
Van Beusekom M. CIDRAP, Mar 18, 2024. -
Study: Men with key anti-inflammatory genetic variant almost 80% less likely to die of COVID
Van Beusekom M. CIDRAP, Mar 14, 2024. -
Funding crunch threatens a key virus-fighting tool: tracking America's poop
Moreno S. Axios, Mar 16, 2024. -
Inside a push to create an NIH office for post-infection chronic illness
Cueto I. STAT, Mar 15, 2024. -
An oral antiviral for Ebola disease
Sprecher A, Van Herp M. Science, Mar 14, 2024. -
HIV in cell culture can be completely eliminated using CRISPR-Cas gene editing technology, increasing hopes of cure
(press release) European Society of Clinical Microbiology and Infectious Diseases, Mar 19, 2024. -
Avian flu detected for first time in US livestock
Schnirring L. CIDRAP, Mar 20, 2024. -
Ancient malaria genome from Roman skeleton hints at disease’s history
Thompson T. Nature, Mar 13, 2024. -
Another Dangerous Amoeba Linked to Neti Pots and Nasal Rinsing
MedPage Today, Mar 14, 2024.
CONCEPTS / COMMENTS
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Maternal and perinatal health research during emerging and ongoing epidemic threats: a landscape analysis and expert consultation.
Mercedes Bonet et al. BMJ Glob Health 2024 3 (3)
METHODS / TOOLS
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Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling.
Florence E Buytaers et al. Front Microbiol 2024 3 1330814 -
MASCOT-Skyline integrates population and migration dynamics to enhance phylogeographic reconstructions.
Nicola Felix Müller et al. bioRxiv 2024 3 -
Machine learning for microbiologists.
Francesco Asnicar et al. Nat Rev Microbiol 2023 11 (4) 191-205 -
Unsupervised identification of significant lineages of SARS-CoV-2 through scalable machine learning methods.
Roberto Cahuantzi et al. Proc Natl Acad Sci U S A 2024 3 (12) e2317284121 -
VIPERA: Viral Intra-Patient Evolution Reporting and Analysis.
Miguel Álvarez-Herrera et al. Virus Evol 2024 3 (1) veae018
EVOLUTION / ECOLOGY / POPULATIONS
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Evolutionary dynamics of the accessory genomes of Staphylococcus aureus.
Kathryn R Piper et al. mSphere 2024 3 e0075123 -
Estimating Between Country Migration in Pneumococcal Populations.
Sophie Belman et al. G3 (Bethesda) 2024 3 -
Hidden threats in the plastisphere: Carbapenemase-producing Enterobacterales colonizing microplastics in river water.
Isabel Silva et al. Sci Total Environ 2024 2 171268 -
Compositional features analysis by machine learning in genome represents linear adaptation of monkeypox virus.
Sen Zhang et al. Front Genet 2024 3 1361952 -
Ongoing mpox outbreak in Kamituga, South Kivu province, associated with monkeypox virus of a novel Clade I sub-lineage, Democratic Republic of the Congo, 2024.
Leandre Murhula Masirika et al. Euro Surveill 2024 3 (11) -
Recent Changes in Patterns of Mammal Infection with Highly Pathogenic Avian Influenza A(H5N1) Virus Worldwide.
Pablo I Plaza et al. Emerg Infect Dis 2024 2 (3) 444-452 -
Concurrent Clade I and Clade II Monkeypox Virus Circulation, Cameroon, 1979-2022.
Delia D Djuicy et al. Emerg Infect Dis 2024 2 (3) 432-443 -
Phylogenetic lineage dynamics of global parainfluenza virus type 3 post-COVID-19 pandemic.
Kihyun Lee et al. mSphere 2024 3 e0062423 -
Tracing histoplasmosis genomic epidemiology and species occurrence across the USA.
Bernardo Guerra Tenório et al. Emerg Microbes Infect 2024 3 (1) 2315960 -
Strong positive selection biases identity-by-descent-based inferences of recent demography and population structure in Plasmodium falciparum.
Bing Guo et al. Nat Commun 2024 3 (1) 2499 -
Genome-based tools for onchocerciasis elimination: utility of the mitochondrial genome for delineating Onchocerca volvulus transmission zones.
Katie E Crawford et al. Int J Parasitol 2023 11 (3-4) 171-183
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Generalizability of machine learning in predicting antimicrobial resistance in E. coli: a multi-country case study in Africa.
Mike Nsubuga et al. BMC Genomics 2024 3 (1) 287 -
Emergence of novel circoviruses in humans and pigs and their possible importance for xenotransplantation and blood transfusions.
Tanja Opriessnig et al. Xenotransplantation 2024 3 (2) e12842 -
Impact Of Low-Frequency HIV-1 Drug Resistance Mutations On Antiretroviral Therapy Outcomes.
Rachel Burdorf et al. J Infect Dis 2024 3 -
Trends of Plasmodium falciparum molecular markers associated with resistance to artemisinins and reduced susceptibility to lumefantrine in Mainland Tanzania from 2016 to 2021.
Catherine Bakari et al. Malar J 2024 3 (1) 71
DETECTION / DIAGNOSIS
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The National Wastewater Surveillance System (NWSS): From inception to widespread coverage, 2020-2022, United States.
Carly Adams et al. Sci Total Environ 2024 3 171566 -
Tracing the origin of SARS-CoV-2 omicron-like spike sequences detected in an urban sewershed: a targeted, longitudinal surveillance study of a cryptic wastewater lineage.
Martin M Shafer et al. Lancet Microbe 2024 3 -
How much should we sequence? An analysis of the Swiss SARS-CoV-2 surveillance effort.
Fanny Wegner et al. Microbiol Spectr 2024 3 e0362823 -
Wastewater Surveillance for Identifying SARS-CoV-2 Infections in Long-Term Care Facilities, Kentucky, USA, 2021-2022.
James W Keck et al. Emerg Infect Dis 2024 2 (3) 530-538 -
Advancing diagnosis of current HCV infection: A key to hepatitis C elimination in the United States.
Saleem Kamili et al. J Infect Dis 2024 3 -
Targeted metagenomics reveals association between severity and pathogen co-detection in infants with respiratory syncytial virus.
Gu-Lung Lin et al. Nat Commun 2024 3 (1) 2379 -
Assessment of the performance of the plasma separation card for HIV-1 viral load monitoring in South Africa.
Lucy Chimoyi et al. J Clin Microbiol 2024 3 e0164923 -
Validation of improved automated nucleic acid extraction methods for direct detection of polioviruses for global polio eradication.
Stacey Jeffries Miles et al. J Virol Methods 2024 3 114914 -
Evaluating the performance of Plasmodium falciparum genetic metrics for inferring National Malaria Control Programme reported incidence in Senegal.
Wesley Wong et al. Malar J 2024 3 (1) 68 -
Genomic malaria surveillance of antenatal care users detects reduced transmission following elimination interventions in Mozambique.
Nanna Brokhattingen et al. Nat Commun 2024 3 (1) 2402 -
Accelerating targeted mosquito control efforts through mobile West Nile virus detection.
Zsaklin Varga et al. Parasit Vectors 2024 3 (1) 140
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Use of whole genomic sequencing to detect New Delhi metallo-B-lactamase (NDM)-producing Escherichia coli outbreak associated with endoscopic procedures.
Geehan Suleyman et al. Infect Control Hosp Epidemiol 2024 3 1-8 -
Congruity of genomic and epidemiological data in modelling of local cholera outbreaks.
Mateusz Wilinski et al. Proc Biol Sci 2024 3 (2019) 20232805 -
Remote surveillance and detection of SARS-CoV-2 transmission among household members in King County, Washington.
Anne Emanuels et al. BMC Infect Dis 2024 3 (1) 309 -
Genetic diversity from proviral DNA as a proxy for time since HIV-1 infection.
Marius Zeeb et al. J Infect Dis 2024 3
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Computational design of mRNA vaccines.
Yoo-Ah Kim et al. Vaccine 2023 7 (7) 1831-1840 -
Safety monitoring of bivalent mRNA COVID-19 vaccine among pregnant persons in the vaccine adverse event reporting System - United States, September 1, 2022 - March 31, 2023.
Pedro L Moro et al. Vaccine 2024 3 -
Early Estimate of Nirsevimab Effectiveness for Prevention of Respiratory Syncytial Virus-Associated Hospitalization Among Infants Entering Their First Respiratory Syncytial Virus Season - New Vaccine Surveillance Network, October 2023-February 2024.
Heidi L Moline et al. MMWR Morb Mortal Wkly Rep 2024 3 (9) 209-214 -
High-throughput sequencing-based neutralization assay reveals how repeated vaccinations impact titers to recent human H1N1 influenza strains.
Andrea N Loes et al. bioRxiv 2024 3
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Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2024
- Page last updated:Sep 5, 2024