Advanced Molecular Detection Clips Content (Published on 02/09/2017)
NEWS
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RNA Vaccine for Zika Shows Promise
Keener AB. The Scientist, Feb 3, 2017. -
Treaty to stop biopiracy threatens to delay flu vaccines
Cressey D. Nature, Feb 8, 2017. -
Infectious Fight: Tackling the Inevitability of Resistance, One Genome at a Time
Buguliskis JS. Clinical Omics, February 7, 2017 -
Toward Killing Cancer with Bacteria
Williams R. The Scientist, Feb 8, 2017. -
Chan Zuckerberg Biohub to Foster High-Risk Technology Development
Johnson M. GenomeWeb, Feb 8, 2017.
EVENTS / TRAINING / WEB RESOURCES
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NCBI Genomics Hackathon
(event) NCBI, Bethesda MD, Mar 20-22, 2017. -
Applying New Technologies to Advance Disease Detection: 2016 Accomplishments
(web doc) NCEZID/CDC. Top 10 Accomplishments, 2016.
CONCEPTS / COMMENTS
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Messages from the first International Conference on Clinical Metagenomics (ICCMg).
Ruppé Etienne et al. Microbes and infection 2017 Feb -
Infection control in the new age of genomic epidemiology.
Tang Patrick et al. American journal of infection control 2017 Feb (2) 170-179 -
How do epidemics become endemic? Lessons from shigellosis in men who have sex with men
Baker K. Microbiology Today, Feb 7, 2017.
METHODS / TOOLS
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Virus Hunting: Discovery of New Episomal Circular Viruses by Rolling Circle Techniques.
Vanmechelen Bert et al. Current protocols in microbiology 2017 Feb 1E.12.1-1E.12.18 -
A universal computational model for predicting antigenic variants of influenza A virus based on conserved antigenic structures.
Peng Yousong et al. Scientific reports 2017 Feb 42051 -
Microbial strain-level population structure and genetic diversity from metagenomes.
Truong Duy Tin et al. Genome research 2017 Feb -
Multifunctional, inexpensive, and reusable nanoparticle-printed biochip for cell manipulation and diagnosis.
Esfandyarpour Rahim et al. Proceedings of the National Academy of Sciences of the United States of America 2017 Feb -
Selective Whole-Genome Amplification Is a Robust Method That Enables Scalable Whole-Genome Sequencing of Plasmodium vivax from Unprocessed Clinical Samples.
Cowell Annie N et al. mBio 2017 Feb (1) -
MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples.
Zolfo Moreno et al. Nucleic acids research 2017 Jan (2) e7 -
TrypsNetDB: An integrated framework for the functional characterization of trypanosomatid proteins.
Gazestani Vahid H et al. PLoS neglected tropical diseases 2017 Feb (2) e0005368 -
Making Transmission Models Accessible to End-Users: The Example of TRANSFIL.
Irvine Michael A et al. PLoS neglected tropical diseases 2017 Feb (2) e0005206
EVOLUTION / ECOLOGY / POPULATIONS
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Toward a Complete North American Borrelia miyamotoi Genome.
Kingry Luke C et al. Genome announcements 2017 Feb (5)
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Complete Genome Sequences of Legionella pneumophila subsp. fraseri Strains Detroit-1 and Dallas 1E.
Raphael Brian H et al. Genome announcements 2017 Feb (5)
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Microbiome sharing between children, livestock and household surfaces in western Kenya.
Mosites Emily et al. PloS one 2017 (2) e0171017
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The History of Bordetella pertussis Genome Evolution Includes Structural Rearrangement.
Weigand Michael R et al. Journal of bacteriology 2017 Feb
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From discovery to outbreak: the genetic evolution of the emerging Zika virus.
Liu Hong et al. Emerging microbes & infections 2016 Oct (10) e111 -
Genetic diversity and evolution of dengue virus serotype 3: A comparative genomics study.
Waman Vaishali P et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Jan 234-240 -
Genetic diversity and molecular epidemiology of Anaplasma.
Battilani Mara et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Jan 195-211 -
DNA multigene characterization of Fasciola hepatica and Lymnaea neotropica and its fascioliasis transmission capacity in Uruguay, with historical correlation, human report review and infection risk analysis.
Bargues María Dolores et al. PLoS neglected tropical diseases 2017 Feb (2) e0005352 -
The spread of artemisinin-resistant Plasmodium falciparum in the Greater Mekong Subregion: a molecular epidemiology observational study.
Imwong Mallika et al. The Lancet. Infectious diseases 2017 Feb
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Comprehensive resistome analysis reveals the prevalence of NDM and MCR-1 in Chinese poultry production.
Wang Yang et al. Nature microbiology 2017 Feb 16260 -
Surveillance of HIV-1 pol transmitted drug resistance in acutely and recently infected antiretroviral drug-naïve persons in rural western Kenya.
Onywera Harris et al. PloS one 2017 (2) e0171124
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Emergence of plasmid-mediated colistin resistance and New Delhi metallo-β-lactamase genes in extensively drug-resistant Escherichia coli isolated from a patient in Thailand.
Paveenkittiporn Wantana et al. Diagnostic microbiology and infectious disease 2017 Feb (2) 157-159
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Population structure of multidrug resistant Klebsiella oxytoca within hospitals across the UK and Ireland identifies sharing of virulence and resistance genes with K. pneumoniae.
Moradigaravand Danesh et al. Genome biology and evolution 2017 Feb -
Detection of a novel sapelovirus in central nervous tissue of pigs with polioencephalomyelitis in the USA.
Arruda P H E et al. Transboundary and emerging diseases 2017 Feb
DETECTION / DIAGNOSIS
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The new frontier of diagnostics: Molecular assays and their role in infection prevention and control.
Das Sanchita et al. American journal of infection control 2017 Feb (2) 158-169 -
First Zika-positive donations in the continental United States.
Galel Susan A et al. Transfusion 2017 Feb -
Molecular approaches for HPV genotyping and HPV-DNA physical status.
Tsakogiannis D et al. Expert reviews in molecular medicine 2017 Feb e1 -
Update on Zika Diagnostic Tests and WHO's Related Activities.
Chua Arlene et al. PLoS neglected tropical diseases 2017 Feb (2) e0005269 -
Validation of Metagenomic Next-Generation Sequencing Tests for Universal Pathogen Detection.
Schlaberg Robert et al. Archives of pathology & laboratory medicine 2017 Feb -
Suspected encephalitis with Candida tropicalis and Fusarium detected by unbiased RNA sequencing.
Christopeit M et al. Annals of hematology 2016 Oct (11) 1919-21
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Assessing the genome level diversity of Listeria monocytogenes from contaminated ice cream and environmental samples linked to a listeriosis outbreak in the United States.
Chen Yi et al. PloS one 2017 (2) e0171389 -
HIV-1 molecular epidemiology among newly diagnosed HIV-1 individuals in Hebei, a low HIV prevalence province in China.
Lu Xinli et al. PloS one 2017 (2) e0171481 -
Identification of a large, fast-expanding HIV-1 subtype B transmission cluster among MSM in Valencia, Spain.
Patiño-Galindo Juan Ángel et al. PloS one 2017 (2) e0171062
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Zika virus protection by a single low-dose nucleoside-modified mRNA vaccination.
Pardi Norbert et al. Nature 2017 Feb -
Genomic Footprints of Selective Sweeps from Metabolic Resistance to Pyrethroids in African Malaria Vectors Are Driven by Scale up of Insecticide-Based Vector Control.
Barnes Kayla G et al. PLoS genetics 2017 Feb (2) e1006539
HOST-MICROBE INTERACTIONS
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From Culture to High-Throughput Sequencing and Beyond: A Layperson's Guide to the "Omics" and Diagnostic Potential of the Microbiome.
O'Toole Paul W et al. Gastroenterology clinics of North America 2017 Mar (1) 9-17 -
Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling.
Asnicar Francesco et al. mSystems (1) -
A Disease-Associated Microbial and Metabolomics State in Relatives of Pediatric Inflammatory Bowel Disease Patients.
Jacobs Jonathan P et al. Cellular and molecular gastroenterology and hepatology 2016 Nov (6) 750-766 -
A Genomic Signature of Influenza Infection Shows Potential for Presymptomatic Detection, Guiding Early Therapy, and Monitoring Clinical Responses.
McClain Micah T et al. Open forum infectious diseases 2016 Jan (1) ofw007 -
RNA-Seq Analysis of Gene Expression, Viral Pathogen, and B-Cell/T-Cell Receptor Signatures in Complex Chronic Disease.
Bouquet Jerome et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 Feb (4) 476-481 -
Genome-wide Association Study Identifies TLL1 Variant Associated With Development of Hepatocellular Carcinoma After Eradication of Hepatitis C Virus Infection.
Matsuura Kentaro et al. Gastroenterology 2017 Feb -
15year fulminant hepatitis B follow-up in Belgium: Viral evolution and signature of demographic change.
Mina Thomas et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Jan 221-225 -
Increased Mitochondrial Genetic Diversity in Persons Infected With Hepatitis C Virus.
Campo David S et al. Cellular and molecular gastroenterology and hepatology 2016 Sep (5) 676-684
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indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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