Advanced Molecular Detection Clips Content (Published on 01/31/2019)
International Team Calls for More Open, Unrestricted Genomic Data Sharing
GenomeWeb, Jan 24, 2019.
Chinese Team Develops Tools for Improved De Novo Peptide Sequencing
Bonislawski A. GenomeWeb, Jan 29, 2019.
How scientists can team up with big tech
Popkin G. Nature, Jan 31, 2019.
Germs in Your Gut Are Talking to Your Brain. Scientists Want to Know What Theyre Saying.
Zimmer C. New York Times, January 28, 2019.
Toward unrestricted use of public genomic data.
Amann Rudolf I et al. Science (New York, N.Y.) 2019 Jan (6425) 350-352
CONCEPTS / COMMENTS
Transforming medicine with the microbiome
Zmora N, et al. Sci Transl Med, Jan 30, 2019.
METHODS / TOOLS
Effects of the long-term storage of human fecal microbiota samples collected in RNAlater.
Tap Julien et al. Scientific reports 2019 Jan (1) 601
Choice of assembly software has a critical impact on virome characterisation.
Sutton Thomas D S et al. Microbiome 2019 Jan (1) 12
TaME-seq: An efficient sequencing approach for characterisation of HPV genomic variability and chromosomal integration.
Lagström Sonja et al. Scientific reports 2019 Jan (1) 524
Evaluation of two workflows for whole genome sequencing-based typing of influenza A viruses.
Wüthrich Daniel et al. Journal of virological methods 2019 Jan
Beyond the SNP threshold: identifying outbreak clusters using inferred transmissions.
Stimson James et al. Molecular biology and evolution 2019 Jan
Fast and flexible bacterial genomic epidemiology with PopPUNK.
Lees John A et al. Genome research 2019 Jan
EVOLUTION / ECOLOGY / POPULATIONS
Whole genome sequencing reveals resemblance between ESBL-producing and carbapenem resistant Klebsiella pneumoniae isolates from Austrian rivers and clinical isolates from hospitals.
Lepuschitz Sarah et al. The Science of the total environment 2019 Jan 227-235
Draft Genome Sequences of Eight Vibrio sp. Clinical Isolates from across the United States That Form a Basal Sister Clade to Vibrio cholerae.
Liang Kevin et al. Microbiology resource announcements 2019 Jan (3)
Complete Genome Sequence of Nocardia farcinica W6977 T Obtained by Combining Illumina and PacBio Reads.
Gulvik Christopher A et al. Microbiology resource announcements 2019 Jan (3)
Air-conditioner cooling towers as complex reservoirs and continuous source of Legionella pneumophila infection evidenced by a genomic analysis study in 2017, Switzerland.
Wüthrich Daniel et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2019 Jan (4)
Syndromic survey and molecular analysis of influenza viruses at the human-swine interface in two West African cosmopolitan cities suggest the possibility of bidirectional interspecies transmission.
Adeola Oluwagbenga A et al. Zoonoses and public health 2019 Jan
The Asian Lineage of Zika Virus: Transmission and Evolution in Asia and the Americas.
Hu Tao et al. Virologica Sinica 2019 Jan
Genotypic persistence of dengue virus in the Philippines.
Jowina Galarion Ma et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2019 Jan
Coccidioides ecology and genomics.
Barker Bridget M et al. Medical mycology 2019 Feb (Supplement_1) S21-S29
Genetic variation and phylogeography of the Triatoma dimidiata complex evidence a potential center of origin and recent divergence of haplogroups having differential Trypanosoma cruzi and DTU infections.
Pech-May Angélica et al. PLoS neglected tropical diseases 2019 Jan (1) e0007044
Molecular detection of vector-borne bacteria in bat ticks (Acari: Ixodidae, Argasidae) from eight countries of the Old and New Worlds.
Hornok Sándor et al. Parasites & vectors 2019 Jan (1) 50
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
Children with cystic fibrosis are infected with multiple subpopulations of Mycobacterium abscessus with different antimicrobial resistance profiles.
Shaw Liam P et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Jan
Contrasting patterns of gene expression indicate differing pyrethroid resistance mechanisms across the range of the New World malaria vector Anopheles albimanus.
Mackenzie-Impoinvil Lucy et al. PloS one 2019 (1) e0210586
DETECTION / DIAGNOSIS
Use of MALDI-TOF mass spectrometry to detect nosocomial outbreaks of Serratia marcescens and Citrobacter freundii.
Rödel Jürgen et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2019 Jan
Prospective genomic surveillance of methicillin-resistant Staphylococcus aureus (MRSA) associated with bloodstream infection, England, 1 October 2012 to 30 September 2013.
Toleman Michelle S et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2019 Jan (4)
Sequence ambiguity determined from routine pol sequencing is a reliable tool for real-time surveillance of HIV incidence trends.
Lunar Maja M et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2019 Jan
First Laboratory-Confirmed Outbreak of Human and Animal Rift Valley Fever Virus in Uganda in 48 Years.
Shoemaker Trevor R et al. The American journal of tropical medicine and hygiene 2019 Jan
Multi-centric evaluation of the online MSI platform for the identification of cryptic and rare species of Aspergillus by MALDI-TOF.
Imbert Sébastien et al. Medical mycology 2019 Jan
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
Whole-genome sequencing data-based modeling for the investigation of an outbreak of community-associated methicillin-resistant Staphylococcus aureus in a neonatal intensive care unit in Hong Kong.
Cheng Vincent C C et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2019 Jan
Impact of whole genome sequencing on the investigation of food-borne outbreaks of Shiga toxin-producing Escherichia coli serogroup O157:H7, England, 2013 to 2017.
Jenkins Claire et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2019 Jan (4)
Whole genome sequencing of Salmonella Chester reveals geographically distinct clusters, Norway, 2000 to 2016.
Siira Lotta et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2019 Jan (4)
ANTIMICROBIALS / VACCINES / INTERVENTIONS
Current and future influenza vaccines.
Yamayoshi Seiya et al. Nature medicine 2019 Jan
Complement Gene Variants and Shiga Toxin-Producing Escherichia coli -Associated Hemolytic Uremic Syndrome: Retrospective Genetic and Clinical Study.
Frémeaux-Bacchi Véronique et al. Clinical journal of the American Society of Nephrology : CJASN 2019 Jan
Epstein-Barr virus strain variation and cancer.
Kanda Teru et al. Cancer science 2019 Jan
Microbial network disturbances in relapsing refractory Crohn's disease.
Yilmaz Bahtiyar et al. Nature medicine 2019 Jan
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