Advanced Molecular Detection Clips Content (Published on 01/27/2022)
NEWS
-
There Will Be Another Variant. Here's What the World Can Do Now.
Nkengason J. New York Times, Jan 20, 2022. -
Omicron Is a Warning. Will We Listen? There's an urgent need to prepare for future variants
Bershteyn A. MedPage Today, Jan 21, 2022. -
Omicron BA.2 Variant May Be Extra Transmissible
Fiore K. MedPage Today, Jan 24, 2022. -
Omicron was probably in N.Y.C. well before the first U.S. case was detected, wastewater data suggest.
Anthes E. New York Times, Jan 20, 2022. -
What?s known about 'stealth' version of omicron?
Ungar L. AP, Jan 25, 2022. -
This simple clip can detect how much coronavirus surrounds you
Stannard E. New Haven Register, Jan 21, 2022. -
In Sewage, Clues to Omicron's Surge
Anthes E, Imbler S. New York Times, Jan 19, 2022. -
Marshfield Clinic helps state identify COVID variants
Helwig B. WSAW (TV), Jan 20, 2022. -
New Research Hints at 4 Factors That May Increase Chances of Long Covid
Belluck P. New York Times, Jan 25, 2022. -
Long-COVID symptoms less likely in vaccinated people, Israeli data say
Kreier F. Nature, Jan 25, 2022. -
COVID-19 Severity Biomarker Candidates Revealed in RNA Sequencing Study
GenomeWeb, Jan 26, 2022.
EVENTS / TRAINING / WEB RESOURCES
-
Bringing bioinformatics to schools with the 4273pi project.
Bain Stevie A et al. PLoS computational biology 2022 1 (1) e1009705
CONCEPTS / COMMENTS
-
COVID Is Changing the Dynamics of Medical Research and Publishing - Hasty studies and neglect of other health issues should make us question the current approach
Loupy A, Raynaud M. MedPage Today, Jan 22, 2022. -
A Centenary Tale of Two Pandemics: The 1918 Influenza Pandemic and COVID-19, Part II.
Morens David M et al. American journal of public health 2021 6 (7) 1267-1272
METHODS / TOOLS
-
ResFinder - an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes
Florensa AF, et al. Microb Genom. 2022 Jan;8(1). -
ONTdeCIPHER: An amplicon-based nanopore sequencing pipeline for tracking pathogen variants.
Cherif Emira et al. Bioinformatics (Oxford, England) 2022 1 -
Covariation of viral recombination with single nucleotide variants during virus evolution revealed by CoVaMa.
Wang Shiyi et al. Nucleic acids research 2022 1
EVOLUTION / ECOLOGY / POPULATIONS
-
Comparative genomics of Bordetella pertussis isolates from New Zealand, a country with an uncommonly high incidence of whooping cough
Ring N, et al. Microb Genom. 2022 Jan;8(1). -
Genomic characterization unravelling the causative role of SARS-CoV-2 Delta variant of lineage B.1.617.2 in 2nd wave of COVID-19 pandemic in Chhattisgarh, India.
Singh Pushpendra et al. Microbial pathogenesis 2022 1 105404 -
Detection of SARS-CoV-2 variant 501Y.V2 in Comoros Islands in January 2021.
N Agoti Charles et al. Wellcome open research 2022 1 192 -
Spatio-temporal dynamics of intra-host variability in SARS-CoV-2 genomes.
Pathak Ankit K et al. Nucleic acids research 2022 1 -
SARS-CoV-2 B.1.619 and B.1.620 Lineages, South Korea, 2021.
Park Ae Kyung et al. Emerging infectious diseases 2022 1 (2) 415-419 -
Widespread Detection of Multiple Strains of Crimean-Congo Hemorrhagic Fever Virus in Ticks, Spain.
Sánchez-Seco María Paz et al. Emerging infectious diseases 2022 1 (2) 394-402 -
Genetic Diversity and Spatiotemporal Dynamics of Chikungunya Infections in Mexico during the Outbreak of 2014-2016.
Rodríguez-Aguilar Eduardo D et al. Viruses 2022 1 (1)
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
-
Third generation cephalosporin-resistant Klebsiella pneumoniae thriving in patients and in wastewater: what do they have in common?
Rocha J, et al. BMC Genomics, Jan 22, 2022. -
Neisseria gonorrhoeae FC428 Subclone, Vietnam, 2019-2020.
Trinh Trang Minh et al. Emerging infectious diseases 2022 1 (2) 432-435 -
A citywide, clonal outbreak of Pseudomonas aeruginosa.
Opperman Christoffel J et al. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases 2022 1 -
High-resolution genomic surveillance elucidates a multilayered hierarchical transfer of resistance between WWTP- and human/animal-associated bacteria.
Che You et al. Microbiome 2022 1 (1) 16 -
The promiscuous and highly mobile resistome of Acinetobacter baumannii
Hernandez-Gonzalez I, et al. Microb Genom. 2022 Jan;8(1). -
Mutations in SARS-CoV-2 variants of concern link to increased spike cleavage and virus transmission
Escalera A, et al. Cell Host Microbe, Jan 21, 2022. -
The PB1 gene from H9N2 avian influenza virus showed high compatibility and increased mutation rate after reassorting with a human H1N1 influenza virus.
Cui Hongrui et al. Virology journal 2022 1 (1) 20
DETECTION / DIAGNOSIS
-
Isolation of Elizabethkingia anophelis From COVID-19 Swab Kits.
Xu Liangcai et al. Frontiers in microbiology 2022 1 799150
-
The basis of molecular diagnostics for piroplasmids: Do the sequences lie?
Mans Ben J et al. Ticks and tick-borne diseases 2022 1 (2) 101907
-
Use of sewage surveillance for COVID-19 to guide public health response: A case study in Hong Kong.
Deng Yu et al. The Science of the total environment 2022 1 153250 -
Detection and Sequencing of Multiple Human Norovirus Genotypes from Imported Frozen Raspberries Linked to Outbreaks in the Province of Quebec, Canada, in 2017.
Raymond Philippe et al. Food and environmental virology 2022 1
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
-
Genomic epidemiology links Burkholderia pseudomallei from individual human cases to B. pseudomallei from targeted environmental sampling in Northern Australia.
Webb Jessica R et al. Journal of clinical microbiology 2022 1 JCM0164821 -
Spread of multiple SARS-CoV-2 lineages April-August 2020 anticipated the second pandemic wave in Lombardy (Italy).
Tallarita Monica et al. Pediatric allergy and immunology : official publication of the European Society of Pediatric Allergy and Immunology 2022 1 89-92 -
Investigation of a Limited but Explosive COVID-19 Outbreak in a German Secondary School.
Baumgarte Sigrid et al. Viruses 2022 1 (1) -
Viral infection and transmission in a large, well-traced outbreak caused by the SARS-CoV-2 Delta variant.
Li Baisheng et al. Nature communications 2022 1 (1) 460 -
Rapid emergence of SARS-CoV-2 Omicron variant is associated with an infection advantage over Delta in vaccinated persons
Chaguza C, et al. medRxiv, Jan 25, 2022. -
Ongoing HIV transmission following a large outbreak among people who inject drugs in Athens, Greece (2014-2020).
Roussos Sotirios et al. Addiction (Abingdon, England) 2022 1 -
Dating the Origin and Estimating the Transmission Rates of the Major HIV-1 Clusters in Greece: Evidence about the Earliest Subtype A1 Epidemic in Europe.
Limnaios Stefanos et al. Viruses 2022 1 (1)
ANTIMICROBIALS / VACCINES / INTERVENTIONS
-
CD4+ T-cells from COVID-19 mRNA vaccine recipients recognize a conserved epitope present in diverse coronaviruses.
Woldemeskel Bezawit A et al. The Journal of clinical investigation 2022 1
-
Myocarditis Cases Reported After mRNA-Based COVID-19 Vaccination in the US From December 2020 to August 2021.
Oster Matthew E et al. JAMA 2022 1 (4) 331-340
-
Pembrolizumab induces HIV latency reversal in people living with HIV and cancer on antiretroviral therapy.
Uldrick Thomas S et al. Science translational medicine 2022 1 (629) eabl3836
HOST-MICROBE INTERACTIONS
-
Memory Gaps in America: Mutational and Immunoinformatic Analysis of Evolving SARS-CoV-2 Variants of Concern and Interest.
Shakran Dina A et al. ImmunoHorizons 2022 1 (1) 1-7 -
Serological Markers of SARS-CoV-2 Reinfection.
Siddiqui Sameed M et al. mBio 2022 1 e0214121 -
Multiple Early Factors Anticipate Post-Acute COVID-19 Sequelae
Su Y, et al. Cell, Jan 24, 2022. -
Functional proteomic profiling links deficient DNA clearance to mortality in patients with severe COVID-19 pneumonia
Papayannopoulos V, et al. medRxiv, Jan 25, 2022. -
Advances in understanding of the innate immune response to human norovirus infection using organoid models.
Mboko Wadzanai P et al. The Journal of general virology 2022 1 (1)
-
Human Papillomavirus Infection Determines Prognosis in Cervical Cancer.
Lei Jiayao et al. Journal of clinical oncology : official journal of the American Society of Clinical Oncology 2022 1 JCO2101930
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2024
- Page last updated:Jan 9, 2025