Advanced Molecular Detection Clips Content (Published on 01/25/2024)
NEWS
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Syphilis microbe’s family has plagued humans for millennia
Callaway E. Nature, Jan 24, 2023. -
New chronic Covid study offers insight into which immunocompromised patients are most at risk
Cooney E. STAT, Jan 24, 2024. -
Researchers outline COVID-19 outbreak at Mongolian beaver farm
Van Beusekom M. CIDRAP, Jan 19. 2024. -
Long COVID Linked to Ongoing Immune Activation, Cell Damage in Proteomics Study
Anderson A. GenomeWeb, Jan 19, 2024. -
Wastewater tracking useful for norovirus activity
Schnirring L. CIDRAP, Jan 19, 2024.
EVENTS / TRAINING / WEB RESOURCES
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Optical genome mapping
(briefing) Wilson H. PHG Foundation, Nov 2023.
POLICY
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Food Safety: FDA Should Finalize Plans to Implement Its Rule to Help Trace Source of Outbreaks
(report) GAO, Jan 18, 2024.
CONCEPTS / COMMENTS
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Building Research Capacity in Low- and Middle-Income Countries and Pandemic Preparedness: Lessons Learned and Future Directions.
Peter H Kilmarx et al. Am J Trop Med Hyg 2024 1
METHODS / TOOLS
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Genome sequencing of the mpox virus 2022 outbreak with amplicon-based Oxford Nanopore MinION sequencing.
Annika Brinkmann et al. J Virol Methods 2024 1 114888
EVOLUTION / ECOLOGY / POPULATIONS
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Redefining the treponemal history through pre-Columbian genomes from Brazil
Majander K, et al. Nature, Jan 24, 2024. -
Using big sequencing data to identify chronic SARS-Coronavirus-2 infections.
Sheri Harari et al. Nat Commun 2024 1 (1) 648 -
Reclassification of ASFV into 7 Biotypes Using Unsupervised Machine Learning.
Mark Dinhobl et al. Viruses 2024 1 (1) -
Temporal Dynamics, Discovery, and Emergence of Human-Transmissible RNA Viruses.
Lu Lu et al. Mol Biol Evol 2024 1 (1) -
Mitochondrial genetic diversity and phylogenetic relationships of Echinococcus multilocularis in Europe.
Azzurra Santoro et al. Int J Parasitol 2024 1
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Differentiation of hypervirulent and classical Klebsiella pneumoniae with acquired drug resistance.
Thomas A Russo et al. mBio 2024 1 e0286723 -
Novel strain of multidrug non-susceptible Neisseria gonorrhoeae in the USA.
Jennifer L Reimche et al. Lancet Infect Dis 2024 1 -
Novel and reported compensatory mutations in rpoABC genes found in drug resistant tuberculosis outbreaks.
Derek Conkle-Gutierrez et al. Front Microbiol 2024 1 1265390 -
Introduction and Spread of Dengue Virus 3, Florida, USA, May 2022-April 2023.
Forrest K Jones et al. Emerg Infect Dis 2024 1 (2) 376-379 -
Tecovirimat Resistance in Mpox Patients, United States, 2022-2023.
Todd G Smith et al. Emerg Infect Dis 2023 10 (12) 2426-2432 -
Genomic description of acquired fluconazole- and echinocandin-resistance in patients with serial Candida glabrata isolates.
E Misas et al. J Clin Microbiol 2024 1 e0114023
DETECTION / DIAGNOSIS
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Strengthening the genomic surveillance of Francisella tularensis by using culture-free whole-genome sequencing from biological samples.
Joana Isidro et al. Front Microbiol 2024 1 1277468 -
RT-PCR genotyping assays to identify SARS-CoV-2 variants in England in 2021: a design and retrospective evaluation study.
Neil Bray et al. Lancet Microbe 2024 1 -
Use of genotypic HIV DNA testing: a DELPHI-type consensus.
Elisabeth Andre-Garnier et al. J Antimicrob Chemother 2024 1 -
Pegivirus Detection in Cerebrospinal Fluid from Patients with Central Nervous System Infections of Unknown Etiology in Brazil by Viral Metagenomics.
Rita de Cássia Compagnoli Carmona et al. Microorganisms 2024 1 (1) -
Exploring the Genomic Dynamics of the Monkeypox Epidemic in Paraguay.
Cynthia Vazquez et al. Viruses 2024 1 (1) -
Detection of Blastomyces gilchristii via metagenomic sequencing in outbreak-associated soils.
Alexandra M Linz et al. Med Mycol 2024 1 (1) -
Tracking arboviruses, their transmission vectors and potential hosts by nanopore sequencing of mosquitoes.
Jeremy D Mirza et al. Microb Genom 2024 1 (1)
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Signatures of transmission in within-host M. tuberculosis variation.
Katharine S Walter et al. medRxiv 2024 1 -
Campylobacteriosis in Finland: Passive Surveillance in 2004-2021 and a Pilot Case-Control Study with Whole-Genome Sequencing in Summer 2022.
Kristiina Suominen et al. Microorganisms 2024 1 (1) -
Genomic and epidemiological insight of an outbreak of carbapenemase-producing Enterobacterales in a Portuguese hospital with the emergence of the new KPC-124.
Vera Manageiro et al. J Infect Public Health 2024 1 (3) 386-395 -
Integrated analysis of patient networks and plasmid genomes reveals a regional, multi-species outbreak of carbapenemase-producing Enterobacterales carrying both blaIMP and mcr-9 genes.
Yu Wan et al. J Infect Dis 2024 1 -
Application of phylodynamics to identify spread of antimicrobial-resistant Escherichia coli between humans and canines in an urban environment.
Nikolina Walas et al. Sci Total Environ 2024 1 170139 -
Ralstonia pickettii bloodstream infections with potential genomic link to internationally distributed contaminated saline solution, Germany, October 2023.
Manuel Krone et al. Euro Surveill 2024 1 (3) -
Integration of individualized and population-level molecular epidemiology data to model COVID-19 outcomes.
Ted Ling-Hu et al. Cell Rep Med 2024 1 (1) 101361 -
SARS-CoV-2 Delta and Omicron community transmission networks as added value to contact tracing.
John M Murray et al. J Infect 2024 1 -
Demographics of sources of HIV-1 transmission in Zambia: a molecular epidemiology analysis in the HPTN 071 PopART study.
Matthew Hall et al. Lancet Microbe 2023 12 (1) e62-e71 -
Circulation, viral diversity and genomic rearrangement in mpox virus in the Netherlands during the 2022 outbreak and beyond.
Leonard Schuele et al. J Med Virol 2024 1 (1) e29397
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Multivalent next generation influenza virus vaccines protect against seasonal and pre-pandemic viruses.
Naoko Uno et al. Sci Rep 2024 1 (1) 1440
HOST-MICROBE INTERACTIONS
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Association of ABO blood group, Rh phenotype and MN blood group with susceptibility to COVID-19.
Genjie Lu et al. PLoS One 2024 1 (1) e0296917 -
SARS-CoV-2 viral clearance and evolution varies by type and severity of immunodeficiency.
Yijia Li et al. Sci Transl Med 2024 1 (731) eadk1599
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Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2024
- Page last updated:Sep 5, 2024