HuGE Literature Finder
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Records 1-81
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Predicting risk for Alcohol Use Disorder using longitudinal data with multimodal biomarkers and family history: a machine learning study.
Molecular psychiatry 2019 Oct . Kinreich Sivan, Meyers Jacquelyn L, Maron-Katz Adi, Kamarajan Chella, Pandey Ashwini K, Chorlian David B, Zhang Jian, Pandey Gayathri, Subbie-Saenz de Viteri Stacey, Pitti Dan, Anokhin Andrey P, Bauer Lance, Hesselbrock Victor, Schuckit Marc A, Edenberg Howard J, Porjesz Berni |
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CT texture analysis for the prediction of KRAS mutation status in colorectal cancer via a machine learning approach.
European journal of radiology 2019 Sep 118 38-43. Taguchi Narumi, Oda Seitaro, Yokota Yasuhiro, Yamamura Sadahiro, Imuta Masanori, Tsuchigame Tadatoshi, Nagayama Yasunori, Kidoh Masafumi, Nakaura Takeshi, Shiraishi Shinya, Funama Yoshinori, Shinriki Satoru, Miyamoto Yuji, Baba Hideo, Yamashita Yasuyu |
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Gene-gene interaction among cell adhesion genes and risk of nonsyndromic cleft lip with or without cleft palate in Chinese case-parent trios.
Molecular genetics & genomic medicine 2019 Aug e872. Liu Dongjing, Wang Mengying, Yuan Yuan, Schwender Holger, Wang Hong, Wang Ping, Zhou Zhibo, Li Jing, Wu Tao, Zhu Hongping, Beaty Terri |
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Comparative performances of machine learning methods for classifying Crohn Disease patients using genome-wide genotyping data.
Scientific reports 2019 Jul 9 (1): 10351. Romagnoni Alberto, Jégou Simon, Van Steen Kristel, Wainrib Gilles, Hugot Jean-Pierre, |
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IgG Galactosylation status combined with MYOM2-rs2294066 precisely predicts anti-TNF response in ankylosing spondylitis.
Molecular medicine (Cambridge, Mass.) 2019 Jun 25 (1): 25. Liu Jing, Zhu Qi, Han Jing, Zhang Hui, Li Yuan, Ma Yanyun, He Dongyi, Gu Jianxin, Zhou Xiaodong, Reveille John D, Jin Li, Zou Hejian, Ren Shifang, Wang Jiuc |
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GenePy - a score for estimating gene pathogenicity in individuals using next-generation sequencing data.
BMC bioinformatics 2019 May 20 (1): 254. Mossotto E, Ashton J J, O'Gorman L, Pengelly R J, Beattie R M, MacArthur B D, Ennis |
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AluScanCNV2: An R package for copy number variation calling and cancer risk prediction with next-generation sequencing data.
Genes & diseases 2019 Mar 6 (1): 43-46. Hu Taobo, Chen Si, Ullah Ata, Xue Ho |
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Case-only Methods Identified Genetic Loci Predicting a Subgroup of Men with Reduced Risk of High-grade Prostate Cancer by Finasteride.
Cancer prevention research (Philadelphia, Pa.) 2019 Feb 12 (2): 113-120. Dai James Y, LeBlanc Michael, Goodman Phyllis J, Lucia M Scott, Thompson Ian M, Tangen Catherine |
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Prediction models for dementia and neuropathology in the oldest old: the Vantaa 85+ cohort study.
Alzheimer's research & therapy 2019 Jan 11 (1): 11. Hall Anette, Pekkala Timo, Polvikoski Tuomo, van Gils Mark, Kivipelto Miia, Lötjönen Jyrki, Mattila Jussi, Kero Mia, Myllykangas Liisa, Mäkelä Mira, Oinas Minna, Paetau Anders, Soininen Hilkka, Tanskanen Maarit, Solomon Ali |
Significant shared heritability underlies suicide attempt and clinically predicted probability of attempting suicide.
Molecular psychiatry 2019 Jan . Ruderfer Douglas M, Walsh Colin G, Aguirre Matthew W, Tanigawa Yosuke, Ribeiro Jessica D, Franklin Joseph C, Rivas Manuel |
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Harnessing Clinical Sequencing Data for Survival Stratification of Patients with Metastatic Lung Adenocarcinomas.
JCO precision oncology 2019 3 . Shen Ronglai, Martin Axel, Ni Ai, Hellmann Matthew, Arbour Kathryn C, Jordan Emmet, Arora Arshi, Ptashkin Ryan, Zehir Ahmet, Kris Mark G, Rudin Charles M, Berger Michael F, Solit David B, Seshan Venkatraman E, Arcila Maria, Ladanyi Marc, Riely Gregory |
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Outgroup Machine Learning Approach Identifies Single Nucleotide Variants in Noncoding DNA Associated with Autism Spectrum Disorder.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2019 24 260-271. Varma Maya, Paskov Kelley Marie, Jung Jae-Yoon, Sierra Chrisman Brianna, Stockham Nate Tyler, Washington Peter Yigitcan, Wall Dennis Pa |
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Using topic modeling via non-negative matrix factorization to identify relationships between genetic variants and disease phenotypes: A case study of Lipoprotein(a) (LPA).
PloS one 2019 14 (2): e0212112. Zhao Juan, Feng QiPing, Wu Patrick, Warner Jeremy L, Denny Joshua C, Wei Wei- |
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Clinical and Genetic Determinants of Varicose Veins.
Circulation 2018 Dec 138 (25): 2869-2880. Fukaya Eri, Flores Alyssa M, Lindholm Daniel, Gustafsson Stefan, Zanetti Daniela, Ingelsson Erik, Leeper Nicholas |
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CT Slice Thickness and Convolution Kernel Affect Performance of a Radiomic Model for Predicting EGFR Status in Non-Small Cell Lung Cancer: A Preliminary Study.
Scientific reports 2018 Dec 8 (1): 17913. Li Yajun, Lu Lin, Xiao Manjun, Dercle Laurent, Huang Yue, Zhang Zishu, Schwartz Lawrence H, Li Daiqiang, Zhao Binshe |
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Machine learning identifies interacting genetic variants contributing to breast cancer risk: A case study in Finnish cases and controls.
Scientific reports 2018 Sep 8 (1): 13149. Behravan Hamid, Hartikainen Jaana M, Tengström Maria, Pylkäs Katri, Winqvist Robert, Kosma Veli-Matti, Mannermaa Ar |
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A machine learning-based prediction model of H3K27M mutations in brainstem gliomas using conventional MRI and clinical features.
Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology 2018 Aug . Pan Chang-Cun, Liu Jia, Tang Jie, Chen Xin, Chen Fang, Wu Yu-Liang, Geng Yi-Bo, Xu Cheng, Zhang Xinran, Wu Zhen, Gao Pei-Yi, Zhang Jun-Ting, Yan Hai, Liao Hongen, Zhang Li-W |
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Accurate Genomic Prediction Of Human Height.
Genetics 2018 Aug . Lello Louis, Avery Steven G, Tellier Laurent, Vazquez Ana I, de Los Campos Gustavo, Hsu Stephen D |
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Gene-Metabolite Interaction in the One Carbon Metabolism Pathway: Predictors of Colorectal Cancer in Multi-Ethnic Families.
Journal of personalized medicine 2018 Aug 8 (3): . Shiao S Pamela K, Grayson James, Yu Chong |
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A Meta-Prediction of Methylenetetrahydrofolate-Reductase Polymorphisms and Air Pollution Increased the Risk of Ischemic Heart Diseases Worldwide.
International journal of environmental research and public health 2018 Jul 15 (7): . Chen Zhao-Feng, Young Lufei, Yu Chong Ho, Shiao S Pamela |
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Epidermal Growth Factor Receptor Extracellular Domain Mutations in Glioblastoma Present Opportunities for Clinical Imaging and Therapeutic Development.
Cancer cell 2018 Jul 34 (1): 163-177.e7. Binder Zev A, Thorne Amy Haseley, Bakas Spyridon, Wileyto E Paul, Bilello Michel, Akbari Hamed, Rathore Saima, Ha Sung Min, Zhang Logan, Ferguson Cole J, Dahiya Sonika, Bi Wenya Linda, Reardon David A, Idbaih Ahmed, Felsberg Joerg, Hentschel Bettina, Weller Michael, Bagley Stephen J, Morrissette Jennifer J D, Nasrallah MacLean P, Ma Jianhui, Zanca Ciro, Scott Andrew M, Orellana Laura, Davatzikos Christos, Furnari Frank B, O'Rourke Donald |
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Association Between MICA Gene Variants and the Risk of Hepatitis C Virus-Induced Hepatocellular Cancer in a Sicilian Population Sample.
Omics : a journal of integrative biology 2018 Mar . Augello Giuseppa, Balasus Daniele, Fusilli Caterina, Mazza Tommaso, Emma Maria Rita, Giannitrapani Lydia, Agliastro Rosalia, Cervello Melchiorre, Montalto Giusep |
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Gene Environment Interactions and Predictors of Colorectal Cancer in Family-Based, Multi-Ethnic Groups.
Journal of personalized medicine 2018 Feb 8 (1): . Shiao S Pamela K, Grayson James, Yu Chong Ho, Wasek Brandi, Bottiglieri Teodo |
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Machine Learning on a Genome-wide Association Study to Predict Late Genitourinary Toxicity After Prostate Radiation Therapy.
International journal of radiation oncology, biology, physics 2018 Jan . Lee Sangkyu, Kerns Sarah, Ostrer Harry, Rosenstein Barry, Deasy Joseph O, Oh Jung H |
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Prediction of opioid dose in cancer pain patients using genetic profiling: not yet an option with support vector machine learning.
BMC research notes 2018 Jan 11 (1): 78. Olesen Anne Estrup, Grønlund Debbie, Gram Mikkel, Skorpen Frank, Drewes Asbjørn Mohr, Klepstad P |
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Association of specific gene mutations derived from machine learning with survival in lung adenocarcinoma.
PloS one 2018 13 (11): e0207204. Cho Han-Jun, Lee Soonchul, Ji Young Geon, Lee Dong Hye |
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Machine learning shows association between genetic variability in PPARG and cerebral connectivity in preterm infants.
Proceedings of the National Academy of Sciences of the United States of America 2017 Dec . Krishnan Michelle L, Wang Zi, Aljabar Paul, Ball Gareth, Mirza Ghazala, Saxena Alka, Counsell Serena J, Hajnal Joseph V, Montana Giovanni, Edwards A Dav |
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Genomic risk prediction of aromatase inhibitor-related arthralgia in patients with breast cancer using a novel machine-learning algorithm.
Cancer medicine 2017 Nov . Reinbolt Raquel E, Sonis Stephen, Timmers Cynthia D, Fernández-Martínez Juan Luis, Cernea Ana, de Andrés-Galiana Enrique J, Hashemi Sepehr, Miller Karin, Pilarski Robert, Lustberg Maryam |
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Biological function integrated prediction of severe radiographic progression in rheumatoid arthritis: a nested case control study.
Arthritis research & therapy 2017 Oct 19 (1): 244. Joo Young Bin, Kim Yul, Park Youngho, Kim Kwangwoo, Ryu Jeong Ah, Lee Seunghun, Bang So-Young, Lee Hye-Soon, Yi Gwan-Su, Bae Sang-Che |
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Genetic variants in metabolic signaling pathways and their interaction with lifestyle factors on breast cancer risk: A random survival forest analysis.
Cancer prevention research (Philadelphia, Pa.) 2017 Oct . Jung Su Yon, Papp Jeanette C, Sobel Eric M, Zhang Zuo-Fe |
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Genotype-driven identification of a molecular network predictive of advanced coronary calcium in ClinSeq® and Framingham Heart Study cohorts.
BMC systems biology 2017 Oct 11 (1): 99. Oguz Cihan, Sen Shurjo K, Davis Adam R, Fu Yi-Ping, O'Donnell Christopher J, Gibbons Gary |
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Pleiotropic genes in psychiatry: Calcium channels and the stress-related FKBP5 gene in antidepressant resistance.
Progress in neuro-psychopharmacology & biological psychiatry 2017 Oct . Fabbri Chiara, Corponi Filippo, Albani Diego, Raimondi Ilaria, Forloni Gianluigi, Schruers Koen, Kasper Siegfried, Kautzky Alexander, Zohar Joseph, Souery Daniel, Montgomery Stuart, Cristalli Carlotta Pia, Mantovani Vilma, Mendlewicz Julien, Serretti Alessand |
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Prediction of Adulthood Obesity Using Genetic and Childhood Clinical Risk Factors in the Cardiovascular Risk in Young Finns Study.
Circulation. Cardiovascular genetics 2017 Jun 10 (3): . Seyednasrollah Fatemeh, Mäkelä Johanna, Pitkänen Niina, Juonala Markus, Hutri-Kähönen Nina, Lehtimäki Terho, Viikari Jorma, Kelly Tanika, Li Changwei, Bazzano Lydia, Elo Laura L, Raitakari Olli |
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The influence of the rs6295 gene polymorphism on serotonin-1A receptor distribution investigated with PET in patients with major depression applying machine learning.
Translational psychiatry 2017 Jun 7 (6): e1150. Kautzky A, James G M, Philippe C, Baldinger-Melich P, Kraus C, Kranz G S, Vanicek T, Gryglewski G, Wadsak W, Mitterhauser M, Rujescu D, Kasper S, Lanzenberger |
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Untangling the role of one-carbon metabolism in colorectal cancer risk: a comprehensive Bayesian network analysis.
Scientific reports 2017 Feb 7 43434. Myte Robin, Gylling Björn, Häggström Jenny, Schneede Jörn, Magne Ueland Per, Hallmans Göran, Johansson Ingegerd, Palmqvist Richard, Van Guelpen Betha |
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Development of a Late-Life Dementia Prediction Index with Supervised Machine Learning in the Population-Based CAIDE Study.
Journal of Alzheimer's disease : JAD 2017 55 (3): 1055-1067. Pekkala Timo, Hall Anette, Lötjönen Jyrki, Mattila Jussi, Soininen Hilkka, Ngandu Tiia, Laatikainen Tiina, Kivipelto Miia, Solomon Ali |
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The association of variants in PNPLA3 and GRP78 and the risk of developing hepatocellular carcinoma in an Italian population.
Oncotarget 2016 Dec 7 (52): 86791-86802. Balasus Daniele, Way Michael, Fusilli Caterina, Mazza Tommaso, Morgan Marsha Y, Cervello Melchiorre, Giannitrapani Lydia, Soresi Maurizio, Agliastro Rosalia, Vinciguerra Manlio, Montalto Giusep |
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Prospective functional classification of all possible missense variants in PPARG.
Nature genetics 2016 Oct . Majithia Amit R, Tsuda Ben, Agostini Maura, Gnanapradeepan Keerthana, Rice Robert, Peloso Gina, Patel Kashyap A, Zhang Xiaolan, Broekema Marjoleine F, Patterson Nick, Duby Marc, Sharpe Ted, Kalkhoven Eric, Rosen Evan D, Barroso Inês, Ellard Sian, , Kathiresan Sekar, , O'Rahilly Stephen, , Chatterjee Krishna, Florez Jose C, Mikkelsen Tarjei, Savage David B, Altshuler Dav |
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Use of a novel non-parametric version of DEPTH to identify genomic regions associated with prostate cancer risk.
Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2016 Aug . MacInnis Robert J, Schmidt Daniel F, Makalic Enes, Severi Gianluca, FitzGerald Liesel, Reumann Matthias, Kapuscinski Miroslav K, Kowalczyk Adam, Zhou Zeyu, Goudey Benjamin W, Qian Guoqi, Bui Minh, Park Daniel J, Freeman Adam, Southey Melissa C, Amin Al Olama Ali, Kote-Jarai Zsofia, Eeles Rosalind A, Hopper John L, Giles Graham |
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Multimodal MRI features predict isocitrate dehydrogenase genotype in high-grade gliomas.
Neuro-oncology 2016 Jun . Zhang Biqi, Chang Ken, Ramkissoon Shakti, Tanguturi Shyam, Bi Wenya Linda, Reardon David A, Ligon Keith L, Alexander Brian M, Wen Patrick Y, Huang Raymond |
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SU-D-204-06: Integration of Machine Learning and Bioinformatics Methods to Analyze Genome-Wide Association Study Data for Rectal Bleeding and Erectile Dysfunction Following Radiotherapy in Prostate Cancer.
Medical physics 2016 Jun 43 (6): 3333. Oh J, Kerns S, Ostrer H, Rosenstein B, Deasy |
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O-002?Genes in IBD-Associated Risk Loci Demonstrate Genotype-, Tissue-, and Inflammation-Specific Patterns of Expression in Terminal Ileum and Colon Mucosal Tissue.
Inflammatory bowel diseases 2016 Mar 22 Suppl 1 S1. Peloquin Joanna, Goel Gautam, Huang Hailiang, Haritunians Talin, Sartor Ryan, Daly Mark, Newberry Rodney, McGovern Dermot, Lira Sergio, Xavier Ramn |
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White matter hyperintensities and imaging patterns of brain ageing in the general population.
Brain : a journal of neurology 2016 Feb . Habes Mohamad, Erus Guray, Toledo Jon B, Zhang Tianhao, Bryan Nick, Launer Lenore J, Rosseel Yves, Janowitz Deborah, Doshi Jimit, Van der Auwera Sandra, von Sarnowski Bettina, Hegenscheid Katrin, Hosten Norbert, Homuth Georg, Völzke Henry, Schminke Ulf, Hoffmann Wolfgang, Grabe Hans J, Davatzikos Christ |
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Blood metabolite markers of preclinical Alzheimer's disease in two longitudinally followed cohorts of older individuals.
Alzheimer's & dementia : the journal of the Alzheimer's Association 2016 07 12 (7): 815-22. Casanova Ramon, Varma Sudhir, Simpson Brittany, Kim Min, An Yang, Saldana Santiago, Riveros Carlos, Moscato Pablo, Griswold Michael, Sonntag Denise, Wahrheit Judith, Klavins Kristaps, Jonsson Palmi V, Eiriksdottir Gudny, Aspelund Thor, Launer Lenore J, Gudnason Vilmundur, Legido Quigley Cristina, Thambisetty Madh |
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Gene expression profiling gut microbiota in different races of humans.
Scientific reports 2016 6 23075. Chen Lei, Zhang Yu-Hang, Huang Tao, Cai Yu-Do |
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Genome-wide prediction and functional characterization of the genetic basis of autism spectrum disorder.
Nature neuroscience 2016 11 19 (11): 1454-1462. Krishnan Arjun, Zhang Ran, Yao Victoria, Theesfeld Chandra L, Wong Aaron K, Tadych Alicja, Volfovsky Natalia, Packer Alan, Lash Alex, Troyanskaya Olga |
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Integrating Genetic, Neuropsychological and Neuroimaging Data to Model Early-Onset Obsessive Compulsive Disorder Severity.
PloS one 2016 11 (4): e0153846. Mas Sergi, Gassó Patricia, Morer Astrid, Calvo Anna, Bargalló Nuria, Lafuente Amalia, Lázaro Lui |
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Gene-Gene Interaction Among WNT Genes for Oral Cleft in Trios.
Genetic epidemiology 2015 Jul 39 (5): 385-94. Li Qing, Kim Yoonhee, Suktitipat Bhoom, Hetmanski Jacqueline B, Marazita Mary L, Duggal Priya, Beaty Terri H, Bailey-Wilson Joan |
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TU-AB-BRA-02: Predicting Gene Mutations in Renal Cell Carcinoma Using Machine Learning.
Medical physics 2015 Jun 42 (6): 3586. Staub D, Hannan R, Thomas K, Jiang S, Pedrosa I, Kapur P, Brugarolas J, Wang |
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The combined effect of genetic polymorphisms and clinical parameters on treatment outcome in treatment-resistant depression.
European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology 2015 Apr 25 (4): 441-53. Kautzky Alexander, Baldinger Pia, Souery Daniel, Montgomery Stuart, Mendlewicz Julien, Zohar Joseph, Serretti Alessandro, Lanzenberger Rupert, Kasper Siegfri |
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Clock gene variants differentiate mood disorders.
Molecular biology reports 2015 Jan 42 (1): 277-88. Dmitrzak-Weglarz Monika Paulina, Pawlak Joanna Maria, Maciukiewicz Malgorzata, Moczko Jerzy, Wilkosc Monika, Leszczynska-Rodziewicz Anna, Zaremba Dorota, Hauser Joan |
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Genome-wide interaction analysis reveals replicated epistatic effects on brain structure.
Neurobiology of aging 2015 Jan 36 Suppl 1 S151-8. Hibar Derrek P, Stein Jason L, Jahanshad Neda, Kohannim Omid, Hua Xue, Toga Arthur W, McMahon Katie L, de Zubicaray Greig I, Martin Nicholas G, Wright Margaret J, , Weiner Michael W, Thompson Paul |
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Integrated analysis of oral tongue squamous cell carcinoma identifies key variants and pathways linked to risk habits, HPV, clinical parameters and tumor recurrence.
F1000Research 2015 4 1215. Krishnan Neeraja, Gupta Saurabh, Palve Vinayak, Varghese Linu, Pattnaik Swetansu, Jain Prach, Khyriem Costerwell, Hariharan Arun, Dhas Kunal, Nair Jayalakshmi, Pareek Manisha, Prasad Venkatesh, Siddappa Gangotri, Suresh Amritha, Kekatpure Vikram, Kuriakose Moni, Panda Bin |
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Tumour genomic and microenvironmental heterogeneity for integrated prediction of 5-year biochemical recurrence of prostate cancer: a retrospective cohort study.
The Lancet. Oncology 2014 Dec 15 (13): 1521-32. Lalonde Emilie, Ishkanian Adrian S, Sykes Jenna, Fraser Michael, Ross-Adams Helen, Erho Nicholas, Dunning Mark J, Halim Silvia, Lamb Alastair D, Moon Nathalie C, Zafarana Gaetano, Warren Anne Y, Meng Xianyue, Thoms John, Grzadkowski Michal R, Berlin Alejandro, Have Cherry L, Ramnarine Varune R, Yao Cindy Q, Malloff Chad A, Lam Lucia L, Xie Honglei, Harding Nicholas J, Mak Denise Y F, Chu Kenneth C, Chong Lauren C, Sendorek Dorota H, P'ng Christine, Collins Colin C, Squire Jeremy A, Jurisica Igor, Cooper Colin, Eeles Rosalind, Pintilie Melania, Dal Pra Alan, Davicioni Elai, Lam Wan L, Milosevic Michael, Neal David E, van der Kwast Theodorus, Boutros Paul C, Bristow Robert |
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Significant SNPs have limited prediction ability for thyroid cancer.
Cancer medicine 2014 Jun 3 (3): 731-5. Guo Shicheng, Wang Yu-Long, Li Yi, Jin Li, Xiong Momiao, Ji Qing-Hai, Wang Jiuc |
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The genetic interacting landscape of 63 candidate genes in Major Depressive Disorder: an explorative study.
BioData mining 2014 7 19. Lekman Magnus, Hössjer Ola, Andrews Peter, Källberg Henrik, Uvehag Daniel, Charney Dennis, Manji Husseini, Rush John A, McMahon Francis J, Moore Jason H, Kockum Ingr |
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A genome-wide association study reveals ARL15, a novel non-HLA susceptibility gene for rheumatoid arthritis in North Indians.
Arthritis and rheumatism 2013 Dec 65 (12): 3026-35. Negi Sapna, Juyal Garima, Senapati Sabyasachi, Prasad Pushplata, Gupta Aditi, Singh Shalini, Kashyap Sujit, Kumar Ashok, Kumar Uma, Gupta Rajiva, Kaur Satbir, Agrawal Suraksha, Aggarwal Amita, Ott Jurg, Jain Sanjay, Juyal Ramesh C, Thelma B |
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Assessment of genetic and nongenetic interactions for the prediction of depressive symptomatology: an analysis of the Wisconsin Longitudinal Study using machine learning algorithms.
American journal of public health 2013 Oct 103 Suppl 1 S136-44. Roetker Nicholas S, Page C David, Yonker James A, Chang Vicky, Roan Carol L, Herd Pamela, Hauser Taissa S, Hauser Robert M, Atwood Craig |
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Definition of High Risk Type 1 Diabetes HLA-DR and HLA-DQ Types Using Only Three Single Nucleotide Polymorphisms.
Diabetes 2013 Feb . Nguyen C, Morahan G, Varney M, Harrison L |
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Application of multi-SNP approaches Bayesian LASSO and AUC-RF to detect main effects of inflammatory-gene variants associated with bladder cancer risk.
PloS one 2013 8 (12): e83745. de Maturana Evangelina López, Ye Yuanqing, Calle M Luz, Rothman Nathaniel, Urrea Víctor, Kogevinas Manolis, Petrus Sandra, Chanock Stephen J, Tardón Adonina, García-Closas Montserrat, González-Neira Anna, Vellalta Gemma, Carrato Alfredo, Navarro Arcadi, Lorente-Galdós Belén, Silverman Debra T, Real Francisco X, Wu Xifeng, Malats Núr |
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Application of multi-SNP approaches Bayesian LASSO and AUC-RF to detect main effects of inflammatory-gene variants associated with bladder cancer risk.
PloS one 2013 8 (12): e83745. de Maturana Evangelina López, Ye Yuanqing, Calle M Luz, Rothman Nathaniel, Urrea Víctor, Kogevinas Manolis, Petrus Sandra, Chanock Stephen J, Tardón Adonina, García-Closas Montserrat, González-Neira Anna, Vellalta Gemma, Carrato Alfredo, Navarro Arcadi, Lorente-Galdós Belén, Silverman Debra T, Real Francisco X, Wu Xifeng, Malats Núr |
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Exhaustive search of the SNP-sNP interactome identifies epistatic effects on brain volume in two cohorts.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention 2013 16 (Pt 3): 600-7. Hibar Derrek P, Stein Jason L, Jahanshad Neda, Kohannim Omid, Toga Arthur W, McMahon Katie L, de Zubicaray Greig I, Montgomery Grant W, Martin Nicholas G, Wright Margaret J, Weiner Michael W, Thompson Paul |
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Multifactor dimensionality reduction reveals a three-locus epistatic interaction associated with susceptibility to pulmonary tuberculosis.
BioData mining 2013 6 (1): 4. Collins Ryan L, Hu Ting, Wejse Christian, Sirugo Giorgio, Williams Scott M, Moore Jason |
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Rule-based models of the interplay between genetic and environmental factors in childhood allergy.
PloS one 2013 8 (11): e80080. Bornelöv Susanne, Sääf Annika, Melén Erik, Bergström Anna, Torabi Moghadam Behrooz, Pulkkinen Ville, Acevedo Nathalie, Orsmark Pietras Christina, Ege Markus, Braun-Fahrländer Charlotte, Riedler Josef, Doekes Gert, Kabesch Michael, van Hage Marianne, Kere Juha, Scheynius Annika, Söderhäll Cilla, Pershagen Göran, Komorowski J |
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Population-based risk factors for elevated alanine aminotransferase in a South Texas Mexican-American population.
Archives of medical research 2012 Aug 43 (6): 482-8. Qu Hui-Qi, Li Quan, Grove Megan L, Lu Yang, Pan Jen-Jung, Rentfro Anne R, Bickel Perry E, Fallon Michael B, Hanis Craig L, Boerwinkle Eric, McCormick Joseph B, Fisher-Hoch Susan |
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Prediction of serotonin transporter promoter polymorphism genotypes from single nucleotide polymorphism arrays using machine learning methods.
Psychiatric genetics 2012 Aug 22 (4): 182-8. Lu Ake Tzu-Hui, Bakker Steven, Janson Esther, Cichon Sven, Cantor Rita M, Ophoff Roel |
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Single nucleotide polymorphisms predict symptom severity of autism spectrum disorder.
Journal of autism and developmental disorders 2012 Jun 42 (6): 971-83. Jiao Yun, Chen Rong, Ke Xiaoyan, Cheng Lu, Chu Kangkang, Lu Zuhong, Herskovits Edward |
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Epistasis network centrality analysis yields pathway replication across two GWAS cohorts for bipolar disorder.
Translational psychiatry 2012 2 e154. Pandey A, Davis N A, White B C, Pajewski N M, Savitz J, Drevets W C, McKinney B |
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A genome-wide screen of gene-gene interactions for rheumatoid arthritis susceptibility.
Human genetics 2011 May 129 (5): 473-85. Liu Chunyu, Ackerman H Hoxie, Carulli John |
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Genome Wide Association Study to predict severe asthma exacerbations in children using random forests classifiers.
BMC medical genetics 2011 12 (1): 90. Xu Mousheng, Tantisira Kelan G, Wu Ann, Litonjua Augusto A, Chu Jen-hwa, Himes Blanca E, Damask Amy, Weiss Scott |
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Additive contribution of HLA class I alleles in the immune control of HIV-1 infection.
Journal of virology 2010 Oct 84 (19): 9879-88. Leslie Alasdair, Matthews Philippa C, Listgarten Jennifer, Carlson Jonathan M, Kadie Carl, Ndung'u Thumbi, Brander Christian, Coovadia Hoosen, Walker Bruce D, Heckerman David, Goulder Philip J |
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Biological validation of increased schizophrenia risk with NRG1, ERBB4, and AKT1 epistasis via functional neuroimaging in healthy controls.
Archives of general psychiatry 2010 Oct 67 (10): 991-1001. Nicodemus Kristin K, Law Amanda J, Radulescu Eugenia, Luna Augustin, Kolachana Bhaskar, Vakkalanka Radhakrishna, Rujescu Dan, Giegling Ina, Straub Richard E, McGee Kate, Gold Bert, Dean Michael, Muglia Pierandrea, Callicott Joseph H, Tan Hao-Yang, Weinberger Daniel |
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Evidence of statistical epistasis between DISC1, CIT and NDEL1 impacting risk for schizophrenia: biological validation with functional neuroimaging.
Human genetics 2010 Apr 127 (4): 441-52. Nicodemus Kristin K, Callicott Joseph H, Higier Rachel G, Luna Augustin, Nixon Devon C, Lipska Barbara K, Vakkalanka Radhakrishna, Giegling Ina, Rujescu Dan, St Clair David, Muglia Pierandrea, Shugart Yin Yao, Weinberger Daniel |
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Supervised machine learning and logistic regression identifies novel epistatic risk factors with PTPN22 for rheumatoid arthritis.
Genes and immunity 2010 Apr 11 (3): 199-208. Briggs F B S, Ramsay P P, Madden E, Norris J M, Holers V M, Mikuls T R, Sokka T, Seldin M F, Gregersen P K, Criswell L A, Barcellos L |
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An application of Random Forests to a genome-wide association dataset: methodological considerations & new findings.
BMC genetics 2010 11 (1): 49. Goldstein Benjamin A, Hubbard Alan E, Cutler Adele, Barcellos Lisa |
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Application of gene network analysis techniques identifies AXIN1/PDIA2 and endoglin haplotypes associated with bicuspid aortic valve.
PloS one 2010 5 (1): e8830. Wooten Eric C, Iyer Lakshmanan K, Montefusco Maria Claudia, Hedgepeth Alyson Kelley, Payne Douglas D, Kapur Navin K, Housman David E, Mendelsohn Michael E, Huggins Gordon |
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Diversity in genes responsible for lifestyle-related diseases in Asia-Pacific region.
Asia-Pacific journal of public health / Asia-Pacific Academic Consortium for Public Health 2008 Oct 20 Suppl 257-61. Yanagisawa Yoshiko, Munkhtulga Lkhagvasuren, Nakayama Kazuhiro, Iwamoto Sadahiko, Charupoonphol Phitaya, Supannnatas Somjit, Kuartei Stevenson, Chimedregzen Ulziiburen, Kawabata Terue, Kaneko Yoshinori, Watanabe Sanae, Sakuma Mitsuru, Komatsu Fumio, Hasegawa Kyoko, Kagawa Yas |
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Synergistic effects of the dopaminergic and glutamatergic system on hippocampal volume in alcohol-dependent patients.
Biological psychology 2008 Sep 79 (1): 126-36. Puls I, Mohr J, Wrase J, Priller J, Behr J, Kitzrow W, Makris N, Breiter H C, Obermayer K, Heinz |
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HLA class I-driven evolution of human immunodeficiency virus type 1 subtype c proteome: immune escape and viral load.
Journal of virology 2008 Jul 82 (13): 6434-46. Rousseau Christine M, Daniels Marcus G, Carlson Jonathan M, Kadie Carl, Crawford Hayley, Prendergast Andrew, Matthews Philippa, Payne Rebecca, Rolland Morgane, Raugi Dana N, Maust Brandon S, Learn Gerald H, Nickle David C, Coovadia Hoosen, Ndung'u Thumbi, Frahm Nicole, Brander Christian, Walker Bruce D, Goulder Philip J R, Bhattacharya Tanmoy, Heckerman David E, Korber Bette T, Mullins James |
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