Last Posted: Aug 12, 2019
- Benchmarking Metagenomics Tools for Taxonomic Classification.
Ye Simon H et al. Cell 2019 Aug (4) 779-794
- Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes
D Bertrand et al, Nature Biotechnology, July 29, 2019
- A Protocol for Extraction of Infective Viromes Suitable for Metagenomics Sequencing from Low Volume Fecal Samples.
Deng Ling et al. Viruses 2019 Jul (7)
- Rapid metagenomics analysis of EMS vehicles for monitoring pathogen load using nanopore DNA sequencing.
Sheahan Taylor et al. PloS one 2019 (7) e0219961
- Metagenomic identification of severe pneumonia pathogens with rapid Nanopore sequencing in mechanically-ventilated patients.
L Yang et al, MedXRIV preprints, July 24, 2019
- Metagenomics and transcriptomics data from human colorectal cancer.
Visnovska Tina et al. Scientific data 2019 Jul (1) 116
- Detection of respiratory pathogens in clinical samples using metagenomic shotgun sequencing.
Qi Chao et al. Journal of medical microbiology 2019 Jul (7) 996-1002
- DeepMicrobes: taxonomic classification for metagenomics with deep learning
Liang Q, et al. bioRxiv, Jul 9, 2019.
- The Supragingival Biofilm in Early Childhood Caries: Clinical and Laboratory Protocols and Bioinformatics Pipelines Supporting Metagenomics, Metatranscriptomics, and Metabolomics Studies of the Oral Microbiome.
Divaris Kimon et al. Methods in molecular biology (Clifton, N.J.) 2019 1922525-548
- Resistome metagenomics from plate to farm: the resistome and microbial composition during food waste feeding and composting on a Vermont poultry farm
Eckstrom K, Barlow J. bioRxiv, Jul 3, 2019.
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Disclaimer: Articles listed in the Public Health Genomics and Precision Health Knowledge Base are selected by the CDC Office of Public Health Genomics to provide current awareness of the literature and news. Inclusion in the update does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the update, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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