Last Posted: Oct 14, 2021
- Editorial: Applications of Metagenomics in Studying Human Cancer.
Huang Guohua et al. Frontiers in genetics 2021 12760141
- Discovering disease-causing pathogens in resource-scarce Southeast Asia using a global metagenomic pathogen monitoring system
JA Bohl et al, MEDRXIV, September 28, 2021
- Detection of Neoplasms by Metagenomic Next-Generation Sequencing of Cerebrospinal Fluid
W Gu et al, JAMA Network Open, September 13, 2021
- Over 50,000 Metagenomically Assembled Draft Genomes for the Human Oral Microbiome Reveal New Taxa.
Zhu Jie et al. Genomics, proteomics & bioinformatics 2021
- Targeted Hybridization Capture of SARS-CoV-2 and Metagenomics Enables Genetic Variant Discovery and Nasal Microbiome Insights.
Nagy-Szakal Dorottya et al. Microbiology spectrum 2021 9 e0019721
- Application of shotgun metagenomics sequencing and targeted sequence capture to detect circulating porcine viruses in the Dutch-German border region.
Schuele Leonard et al. Transboundary and emerging diseases 2021 8
- STRONG: metagenomics strain resolution on assembly graphs.
Quince Christopher et al. Genome biology 2021 7 (1) 214
- Precision Pandemic Preparedness: Improving Diagnostics with Metagenomics.
Govender Kumeren N et al. Journal of clinical microbiology 2021 1 (6)
- Genetics of Ankylosing Spondylitis-Focusing on the Ethnic Difference Between East Asia and Europe.
Wu Xin et al. Frontiers in genetics 2021 12671682
- Viral metagenomics reveals the presence of novel Zika virus variants in Aedes mosquitoes from Barbados.
Thannesberger J et al. Parasites & vectors 2021 7 (1) 343
- The Disease Detective: Joe DeRisi invented a way to find pathogens that scientists didn’t even know to look for. Can it help prevent the next pandemic?
J Kahn, June 3, NY Times, June 5, 2021
- Global Subway Metagenomics Study Reveals Cities' Microbial Fingerprints
GenomeWeb, May 28, 2021.
- Application of Artificial Intelligence Modeling Technology Based on Multi-Omics in Noninvasive Diagnosis of Inflammatory Bowel Disease.
Huang Qiongrong et al. Journal of inflammation research 2021 141933-1943
- Artificial intelligence applications in inflammatory bowel disease: Emerging technologies and future directions.
Gubatan John et al. World journal of gastroenterology 2021 27(17) 1920-1935
- Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak
Buytaers Florence E et al. Microbial genomics 2021 4 (4)
- Microbial source tracking using metagenomics and other new technologies.
Raza Shahbaz et al. Journal of microbiology (Seoul, Korea) 2021 Feb
- Nutrigenomics: lessons learned and future perspectives.
Brennan Lorraine et al. The American journal of clinical nutrition 2021 Jan
- Precision long-read metagenomics sequencing for food safety by detection and assembly of Shiga toxin-producing Escherichia coli in irrigation water.
Maguire Meghan et al. PloS one 2021 (1) e0245172
- Proficiency Testing of Metagenomics-Based Detection of Food-Borne Pathogens Using a Complex Artificial Sequencing Dataset.
Höper Dirk et al. Frontiers in microbiology 2020 575377
- Translating the microbiome in health and disease
Genome Medicine special issue, October 2020
- One year variations of viruses in influent and effluent water at a wastewater plant - assessed by qPCR and metagenomics.
Wang Hao et al. Applied and environmental microbiology 2020 Oct
- A Targeted Metagenomics Approach to Study the Diversity of Norovirus GII in Shellfish Implicated in Outbreaks.
Desdouits Marion et al. Viruses 2020 09 (9)
- Potential applications of human viral metagenomics and reference materials: considerations for current and future viruses.
Santiago-Rodriguez Tasha M et al. Applied and environmental microbiology 2020 Sep
- Targeted metagenomics for clinical detection and discovery of bacterial tickborne pathogens.
Kingry Luke et al. Journal of clinical microbiology 2020 Sep
- A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine.
Buytaers Florence E et al. Microorganisms 2020 Aug (8)
- STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies.
Bharucha Tehmina et al. The Lancet. Infectious diseases 2020 Aug
- Fingerprinting of human noroviruses co-infections in a possible foodborne outbreak by metagenomics.
Liu Danlei et al. International journal of food microbiology 2020 Jul 108787
- Microbiome and health implications for ethnic minorities after enforced lifestyle changes
DM Keohane et al, Nature Medicine, July 6, 2020
- Predicting Vibrio cholerae infection and disease severity using metagenomics in a prospective cohort study.
Levade Inès et al. The Journal of infectious diseases 2020 Jul
- What Is Metagenomics Teaching Us, and What Is Missed?
New Felicia N et al. Annual review of microbiology 2020 Jun
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Disclaimer: Articles listed in the Public Health Genomics and Precision Health Knowledge Base are selected by the CDC Office of Public Health Genomics to provide current awareness of the literature and news. Inclusion in the update does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the update, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.