Last Posted: Jan 24, 2024
- Food Safety: FDA Should Finalize Plans to Implement Its Rule to Help Trace Source of Outbreaks
(report) GAO, Jan 18, 2024. - Whole genome sequencing in the palm of your hand: how to implement a MinION Galaxy-based workflow in a food safety laboratory for rapid Salmonella spp. serotyping, virulence, and antimicrobial resistance gene identification.
Alexandre Lamas et al. Front Microbiol 2023 12 1254692 - Precision metagenomics sequencing for food safety: hybrid assembly of Shiga toxin-producing Escherichia coli in enriched agricultural water.
Meghan Maguire et al. Front Microbiol 2023 9 1221668 - Transforming Shiga toxin-producing Escherichia coli surveillance through whole genome sequencing in food safety practices.
Stéphanie Nouws et al. Front Microbiol 2023 7 1204630 - How Can AI Help Improve Food Safety?
Qian C et al. Annual review of food science and technology 2022 - Identification of Genetic Markers for the Detection of Bacillus thuringiensis Strains of Interest for Food Safety.
Fichant Arnaud et al. Foods (Basel, Switzerland) 2022 12 (23) - The power, potential, benefits, and challenges of implementing high-throughput sequencing in food safety systems.
Imanian Behzad et al. NPJ science of food 2022 8 (1) 35 - Monitoring AMR in Campylobacter jejuni from Italy in the last 10 years (2011-2021): Microbiological and WGS data risk assessment.
Conesa A et al. EFSA journal. European Food Safety Authority 2022 5 (Suppl 1) e200406 - America's Food Safety System Failed to Stop a Salmonella Epidemic. It's Still Making People Sick.
Yeung B, et al. ProPublica, Oct 29, 2021. - Metagenomics Approaches for Improving Food Safety.
Billington Craig et al. Journal of food protection 2021 10 - Interpretative labor and the bane of non-standardized metadata in public health surveillance and food safety.
Pettengill James B et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2021 7 - Preventing Chagas disease: A new RT-qPCR method for rapid and specific quantification of viable Trypanosoma cruzi for food safety.
de Oliveira Ana Caroline et al. Food research international (Ottawa, Ont.) 2021 6 110368 - Machine Learning-Reinforced Noninvasive Biosensors for Healthcare.
Zhang Kaiyi et al. Advanced healthcare materials 2021 e2100734 - Salmonella Genomics in Public Health and Food Safety.
Brown Eric W et al. EcoSal Plus 2021 6 eESP00082020 - Avian influenza overview December 2020 - February 2021.
et al. EFSA journal. European Food Safety Authority 2021 3 (3) e06497 - Emerging Applications of Machine Learning in Food Safety.
Deng Xiangyu et al. Annual review of food science and technology 2021 Jan - Precision long-read metagenomics sequencing for food safety by detection and assembly of Shiga toxin-producing Escherichia coli in irrigation water.
Maguire Meghan et al. PloS one 2021 (1) e0245172 - Identification of risk factors and hotspots of antibiotic resistance along the food chain using next-generation sequencing.
et al. EFSA journal. European Food Safety Authority 2020 Nov (Suppl 1) e181107 - Food Safety Genomics and Connections to One Health and the Clinical Microbiology Laboratory.
Allard Marc W et al. Clinics in laboratory medicine 2020 Dec (4) 553-563 - A Plan to Use Modern Data Tools to Fight Foodborne Illness
MC Jaklevic, JAMA, August 18, 2020 - New Era for Smarter Food Safety Blueprint
FDA, Jul 13, 2020. - New Era of Smarter Food Safety
FDA, July 13, 2020 - Rapid and Robust On-Scene Detection of Cocaine in Street Samples using a Handheld Near Infrared Spectrometer and Machine Learning Algorithms.
Kranenburg Ruben F et al. Drug testing and analysis 2020 Jul - Advancing biological hazards risk assessment.
Messens Winy et al. EFSA journal. European Food Safety Authority 2019 Jul (Suppl 1) e170714 - Translating 'big data': better understanding of host-pathogen interactions to control bacterial foodborne pathogens in poultry.
Deblais Loïc et al. Animal health research reviews 2020 Jan 1-21 - PulseNet and the Changing Paradigm of Laboratory-Based Surveillance for Foodborne Diseases.
Kubota Kristy A et al. Public health reports (Washington, D.C. : 1974) 134(2_suppl) 22S-28S - Restaurants are using AI to listen in on social media. They want to know how you are feeling
M Harden, Stat News, October 2019 - Working Together on the Transition to Whole Genome Sequencing, Making Our Food Supply Safer
R Khabbaz, CSTE Blog, September 18, 2019 - Fishing in the Soup - Pathogen Detection in Food Safety Using Metabarcoding and Metagenomic Sequencing.
Grützke Josephine et al. Frontiers in microbiology 2019 1805 - Use of Whole-Genome Sequencing for Food Safety and Public Health in the United States.
Brown Eric et al. Foodborne pathogens and disease 2019 Jun - Investing in Food Safety for Developing Countries: Opportunities and Challenges in Applying Whole-Genome Sequencing for Food Safety Management.
Apruzzese Isabella et al. Foodborne pathogens and disease 2019 Jun - Precision Food Safety: a Paradigm Shift in Detection and Control of Foodborne Pathogens.
Kovac Jasna et al. mSystems 2019 Jun (3) - PulseNet laboratories transition to whole genome sequencing
H Carleton, CDC Advanced Molecular Detection, May 24, 2019 - The use of next generation sequencing for improving food safety: Translation into practice.
Jagadeesan Balamurugan et al. Food microbiology 2019 Jun 7996-115 - Probes of Foodborne Illness Outbreaks Multiply as Technology Improves- Growing number of multistate outbreak investigations raise pressure on U.S. food companies, from farm to fork
J Newman, WSJ, December 18, 2018 - As Tests for Foodborne Illness Evolve, Disease-Tracking Systems Must Adapt
Pew Charitable Trust, Apr 30, 2018 - '15 for 15' Celebration- Fifteen ways genomics is now influencing our world
NHGRI, Apr 2018 - Shiga Toxin-Producing E. coli & Food Safety
Outbreak Alert - Undiagnosed Diseases: Italy-US Collaboration and International Efforts to Tackle Rare and Common Diseases Lacking a Diagnosis.
Taruscio Domenica et al. Advances in experimental medicine and biology 2017 103125-38 - Genomics of foodborne pathogens for microbial food safety.
Allard Marc W et al. Current opinion in biotechnology 2017 Nov 224-229 - Shiga Toxin-Producing E. coli Infections Associated with Flour.
Crowe Samuel J et al. The New England journal of medicine 2017 Nov (21) 2036-2043 - Whole Genome Sequencing: The Future of Food Safety
CDC YouTube video - Making the Case for Using Whole Genome Sequencing to Fight Foodborne Illness Globally
S Musser et al FDA Blog, Sep 14, 2017 - Molecular Epidemiology and Sequencing Approaches in Public Health - Modules
New York Integrated Food Safety Center of Excellence, Cornell University - Clinical Microbiology Laboratories' Adoption of Culture-Independent Diagnostic Tests Is a Threat to Foodborne-Disease Surveillance in the United States.
Shea Shari et al. Journal of clinical microbiology 2017 Jan (1) 10-19 - ECDC/EFSA/EMA second joint report on the integrated analysis of the consumption of antimicrobial agents and occurrence of antimicrobial resistance in bacteria from humans and food-producing animals
(report) European Food Safety Authority, Jul 27, 2017. - Context Is Everything: Harmonization of Critical Food Microbiology Descriptors and Metadata for Improved Food Safety and Surveillance.
Griffiths Emma et al. Frontiers in microbiology 2017 1068 - A Syst-OMICS Approach to Ensuring Food Safety and Reducing the Economic Burden of Salmonellosis.
Emond-Rheault Jean-Guillaume et al. Frontiers in microbiology 2017 996 - Strain-level metagenomic analysis of the fermented dairy beverage nunu highlights potential food safety risks.
Walsh Aaron M et al. Applied and environmental microbiology 2017 Jun - Solve Foodborne Outbreaks
- Fourth Annual Rapid Detection for Food Safety: Advances in Genomics, Capture Technologies & High Throughput Detection
(conference) Knowledge Foundation, June 26-27, Alexandria, VA. - PulseNet International
- PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance
C Nadon et al, Eurosurveillance 2.0, June 2017 - Whole genome sequencing (WGS) for food-borne pathogen surveillance and control taking the pulse
J Moran-Gilad, Eurosurveillance 2.0, June 2017 - Food Safety in the Age of Next Generation Sequencing, Bioinformatics, and Open Data Access.
Taboada Eduardo N et al. Frontiers in microbiology 2017 909 - Study of bacterias DNA fingerprint suggests it could be spreading via food distribution
Science Magazine, April 2017 - Molecular Epidemiology
(training) New York Integrated Food Safety Center of Excellence - Baseline Practices for the Application of Genomic Data Supporting Regulatory Food Safety.
Lambert Dominic et al. Journal of AOAC International 2017 Jan - Genomics Technique Could Accelerate Detection of Foodborne Bacterial Outbreaks
- Future challenges for tracking foodborne diseases
EM Ribot et al, EMBO Press, November 2016 - Regulatory bioinformatics for food and drug safety.
Healy Marion J et al. Regulatory toxicology and pharmacology : RTP 2016 Oct 342-7 - The FDA's Experience with Emerging Genomics Technologies-Past, Present, and Future.
Xu Joshua et al. The AAPS journal 2016 Jul (4) 814-8 - Whole Genome Sequencing for Genomics-Guided Investigations of Escherichia coli O157:H7 Outbreaks.
Rusconi Brigida et al. Frontiers in microbiology 2016 985 - Navigating Microbiological Food Safety in the Era of Whole-Genome Sequencing.
Ronholm J et al. Clinical microbiology reviews 2016 Oct (4) 837-57 - Impact of Pathogen Population Heterogeneity and Stress-Resistant Variants on Food Safety.
Abee T et al. Annual review of food science and technology 2016 439-56 - Infection with Pathogens Transmitted Commonly Through Food and the Effect of Increasing Use of Culture-Independent Diagnostic Tests on Surveillance Foodborne Diseases Active Surveillance Network, 10 U.S. Sites, 20122015
MMWR, April 15, 2016 - Exploring AMD methods for diagnosing gastrointestinal bacteria
- 20 Years of PulseNet
- An insight into the isolation, enumeration, and molecular detection of Listeria monocytogenes in food.
Law Jodi Woan-Fei et al. Frontiers in microbiology 2015 1227 - Food Testing Start-Up Looks to Stand Out With a New Wrinkle
J Morrisey, New York Times, January 27, 2016 - Genotoxicity assessment of propyl thiosulfinate oxide, an organosulfur compound from Allium extract, intended to food active packaging.
Mellado-García P et al. Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association 2015 Dec 365-73 - Microbial genomics: a new tool to increase food quality and safety
EUFIC, 2015 - Safer Food Saves Lives: Stopping multistate foodborne outbreaks
CDC Vital Signs, November 2015 - Whole Genome Sequencing: The Future of Food Safety - Video
- Application of Metagenomic Sequencing to Food Safety: Detection of Shiga Toxin-producing Escherichia coli on Fresh Bagged Spinach.
Leonard Susan R et al. Applied and environmental microbiology 2015 Sep - Food Safety Savvy
- FDA using DNA to track foodborne illness before it spreads,
by Julie Steenhuysen & Reuters, Genetic Literacy Project, Aug 28 - Bacterial Enteric Infections Detected by Culture-Independent Diagnostic Tests - FoodNet, United States, 2012-2014
MMWR March 13, 2015 - CDC data show progress in reducing some foodborne infections in 2014
- Maximizing the potential of real-time whole genome sequence-based Listeria surveillance to solve outbreaks and improve food safety
- FOOD SAFETY: Keep America's food supply safe by preventing and responding to foodborne illness [PDF 175.33 KB]
2014 Highlights - Omics approaches in food safety: fulfilling the promise?
Bergholz Teresa M et al. Trends in microbiology 2014 May (5) 275-81
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Disclaimer: Articles listed in the Public Health Genomics and Precision Health Knowledge Base are selected by the CDC Office of Public Health Genomics to provide current awareness of the literature and news. Inclusion in the update does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the update, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.