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HuGE Navigator|Phenopedia|PHGKB

Phenopedia


Cleft Palate

557 genes has been reported with Cleft Palate
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Associated Gene
Total Publication
Meta-analysis Publication
    NHLH1 Genopedia 74 12
    IRF6 Genopedia 70 6
    MTHFR Genopedia 50 6
    MSX1 Genopedia 30 1
    TGFA Genopedia 29 2
    TGFB3 Genopedia 26 0
    FOXE1 Genopedia 20 3
    BMP4 Genopedia 19 1
    MAFB Genopedia 15 1
    PAX7 Genopedia 14 1
    VAX1 Genopedia 14 1
    MTR Genopedia 13 2
    ABCA4 Genopedia 12 2
    PVRL1 Genopedia 12 0
    MTHFD1 Genopedia 11 1
    BHMT Genopedia 11 0
    SUMO1 Genopedia 11 0
    CRISPLD2 Genopedia 11 1
    CBS Genopedia 11 0
    MTRR Genopedia 11 2
    BHMT2 Genopedia 9 0
    FGFR1 Genopedia 9 0
    CDH1 Genopedia 9 0
    ARHGAP29 Genopedia 8 0
    WNT3 Genopedia 8 0
    TCN2 Genopedia 8 2
    RARA Genopedia 8 0
    BCL3 Genopedia 8 0
    GRHL3 Genopedia 7 0
    PAX9 Genopedia 7 0
    TBX22 Genopedia 7 0
    SPRY2 Genopedia 7 1
    CEBPB Genopedia 7 1
    COTL1 Genopedia 7 0
    SATB2 Genopedia 7 1
    JAG2 Genopedia 7 0
    TBX10 Genopedia 6 0
    GREM1 Genopedia 6 0
    CLPTM1 Genopedia 6 0
    FGF10 Genopedia 6 0
    SKI Genopedia 6 0
    WNT5A Genopedia 6 0
    WNT9B Genopedia 6 0
    AXIN2 Genopedia 6 0
    WNT3A Genopedia 5 0
    NTN1 Genopedia 5 1
    NAT1 Genopedia 5 0
    RFC1 Genopedia 5 0
    SLC19A1 Genopedia 5 0
    FGFR2 Genopedia 5 0
    SMG1 Genopedia 5 1
    NAT2 Genopedia 5 0
    GABRB3 Genopedia 5 0
    GLI2 Genopedia 5 0
    GSTM1 Genopedia 5 0
    DMGDH Genopedia 5 0
    GSTT1 Genopedia 5 0
    MMP3 Genopedia 5 0
    MSX2 Genopedia 5 0
    MYH9 Genopedia 4 0
    LHX8 Genopedia 4 0
    GSTP1 Genopedia 4 0
    FOLR1 Genopedia 4 0
    FOLR2 Genopedia 4 0
    MTHFS Genopedia 4 0
    MTHFD2 Genopedia 4 0
    COL2A1 Genopedia 4 0
    FGF1 Genopedia 4 0
    CTNNB1 Genopedia 4 0
    BMP2 Genopedia 4 0
    TCOF1 Genopedia 4 0
    TFAP2A Genopedia 4 0
    TIMP2 Genopedia 4 0
    KIAA1598 Genopedia 4 2
    RUNX2 Genopedia 4 0
    TP63 Genopedia 4 1
    TYMS Genopedia 4 0
    WNT10A Genopedia 4 0
    NOG Genopedia 3 0
    WNT11 Genopedia 3 0
    PTCH1 Genopedia 3 0
    PDGFC Genopedia 3 0
    PVRL2 Genopedia 3 0
    PDGFRA Genopedia 3 0
    PON1 Genopedia 3 0
    TPM1 Genopedia 3 0
    TGFB1 Genopedia 3 0
    TGFBR1 Genopedia 3 0
    SNAI1 Genopedia 3 0
    RYK Genopedia 3 0
    THADA Genopedia 3 1
    SHH Genopedia 3 0
    DHFR Genopedia 3 0
    CREBBP Genopedia 3 0
    EDN1 Genopedia 3 0
    EPHX1 Genopedia 3 0
    FGF2 Genopedia 3 0
    FGF12 Genopedia 3 0
    FGF8 Genopedia 3 0
    CYP1A1 Genopedia 3 0
    ALDH1L1 Genopedia 3 0
    GNMT Genopedia 3 0
    GJA1 Genopedia 2 0
    DIEXF Genopedia 2 0
    GAD1 Genopedia 2 0
    FOLR3 Genopedia 2 0
    GTPBP4 Genopedia 2 0
    FOLH1 Genopedia 2 0
    CTH Genopedia 2 0
    HIF1A Genopedia 2 0
    APC Genopedia 2 0
    GSK3B Genopedia 2 0
    NR3C1 Genopedia 2 0
    GLI3 Genopedia 2 0
    MAT2B Genopedia 2 0
    MMP2 Genopedia 2 0
    JARID2 Genopedia 2 0
    MMP9 Genopedia 2 0
    MMP13 Genopedia 2 0
    MYC Genopedia 2 0
    NBN Genopedia 2 0
    NOS3 Genopedia 2 0
    MAT1A Genopedia 2 0
    MAT2A Genopedia 2 0
    KRT18 Genopedia 2 1
    FTCD Genopedia 2 0
    CHKA Genopedia 2 0
    PEMT Genopedia 2 0
    CCDC26 Genopedia 2 0
    COL11A1 Genopedia 2 0
    COL11A2 Genopedia 2 0
    CPO Genopedia 2 1
    ADCY9 Genopedia 2 0
    FGF9 Genopedia 2 0
    FOXF2 Genopedia 2 0
    FGF3 Genopedia 2 0
    FGF4 Genopedia 2 0
    DLX1 Genopedia 2 0
    DLX2 Genopedia 2 0
    DVL2 Genopedia 2 0
    EVC Genopedia 2 0
    AHCY Genopedia 2 0
    DLX4 Genopedia 2 0
    DNTT Genopedia 2 0
    SHMT1 Genopedia 2 0
    PRDM16 Genopedia 2 0
    TGFBR2 Genopedia 2 0
    LEFTY2 Genopedia 2 0
    TIMP3 Genopedia 2 0
    TNF Genopedia 2 0
    BRCA1 Genopedia 2 0
    TBX1 Genopedia 2 0
    PAX3 Genopedia 2 0
    PAX6 Genopedia 2 0
    PITX2 Genopedia 2 0
    CHDH Genopedia 2 0
    PCYT1A Genopedia 2 0
    ROR2 Genopedia 2 0
    OFC1 Genopedia 2 1
    STX18 Genopedia 2 0
    AXIN1 Genopedia 2 0
    RHPN2 Genopedia 2 0
    TTF2 Genopedia 2 0
    FGF18 Genopedia 2 0
    PTCH2 Genopedia 2 0
    ACTN1 Genopedia 2 0
    WNT8A Genopedia 2 0
    WNT5B Genopedia 2 0
    WNT6 Genopedia 2 0
    VCL Genopedia 2 0
    FGFBP1 Genopedia 2 0
    AIP Genopedia 1 0
    PIAS2 Genopedia 1 0
    WDR1 Genopedia 1 0
    FGF19 Genopedia 1 0
    HAND2 Genopedia 1 0
    TBX4 Genopedia 1 0
    GABBR2 Genopedia 1 0
    IKBKE Genopedia 1 0
    ZEB2 Genopedia 1 0
    ARNT2 Genopedia 1 0
    WHSC1 Genopedia 1 0
    UFD1L Genopedia 1 0
    WNT7A Genopedia 1 0
    WNT7B Genopedia 1 0
    SLC7A5 Genopedia 1 0
    FAM49A Genopedia 1 0
    TRIM8 Genopedia 1 0
    CALML3 Genopedia 1 1
    XRCC1 Genopedia 1 0
    XRCC3 Genopedia 1 0
    ZNF189 Genopedia 1 0
    ZNF236 Genopedia 1 0
    SLC30A1 Genopedia 1 0
    SLC30A4 Genopedia 1 0
    PAX8 Genopedia 1 0
    CRELD1 Genopedia 1 0
    MMEL1 Genopedia 1 0
    MYH14 Genopedia 1 0
    BAALC Genopedia 1 0
    SCD5 Genopedia 1 0
    ADAMTS20 Genopedia 1 0
    FRAS1 Genopedia 1 0
    FUZ Genopedia 1 0
    SNX3 Genopedia 1 0
    TNFRSF10B Genopedia 1 0
    SERPINA6 Genopedia 1 0
    TP73L Genopedia 1 1
    FOXH1 Genopedia 1 0
    GLB1L2 Genopedia 1 0
    MSC Genopedia 1 0
    PIWIL1 Genopedia 1 0
    NRXN2 Genopedia 1 0
    FOXP2 Genopedia 1 0
    CASR Genopedia 1 0
    LOXL3 Genopedia 1 0
    OFD1 Genopedia 1 0
    BARX2 Genopedia 1 0
    PIAS1 Genopedia 1 0
    FZD1 Genopedia 1 0
    FZD4 Genopedia 1 0
    FZD7 Genopedia 1 0
    FZD8 Genopedia 1 0
    CRISPLD1 Genopedia 1 0
    BRIP1 Genopedia 1 0
    KREMEN1 Genopedia 1 0
    FOXN1 Genopedia 1 0
    MT4 Genopedia 1 0
    PRRX1 Genopedia 1 0
    WNT4 Genopedia 1 0
    MARK4 Genopedia 1 0
    PTPN11 Genopedia 1 0
    PTEN Genopedia 1 0
    AHRR Genopedia 1 0
    XPO5 Genopedia 1 0
    MIB1 Genopedia 1 0
    SHROOM3 Genopedia 1 1
    SLC2A9 Genopedia 1 0
    SAR1A Genopedia 1 0
    IFNK Genopedia 1 0
    CEACAM19 Genopedia 1 0
    TULP4 Genopedia 1 0
    BACH1 Genopedia 1 0
    SALL4 Genopedia 1 0
    RAD51 Genopedia 1 0
    PTPRS Genopedia 1 0
    PVR Genopedia 1 0
    RARB Genopedia 1 0
    RARG Genopedia 1 0
    RET Genopedia 1 0
    ALX4 Genopedia 1 0
    RPL5 Genopedia 1 0
    RPL11 Genopedia 1 0
    RPL35A Genopedia 1 0
    RPS17 Genopedia 1 0
    RPS19 Genopedia 1 0
    RPS24 Genopedia 1 0
    RXRG Genopedia 1 0
    OGG1 Genopedia 1 0
    PAFAH1B1 Genopedia 1 0
    PAH Genopedia 1 0
    GEMIN4 Genopedia 1 0
    LEF1 Genopedia 1 0
    PIPOX Genopedia 1 0
    PRRX2 Genopedia 1 0
    C9orf156 Genopedia 1 0
    PDGFA Genopedia 1 0
    PEX7 Genopedia 1 0
    ABCB1 Genopedia 1 0
    PITX1 Genopedia 1 0
    STK32B Genopedia 1 0
    HEMGN Genopedia 1 0
    CHD7 Genopedia 1 0
    N4BP2 Genopedia 1 0
    CFC1 Genopedia 1 0
    BARX1 Genopedia 1 0
    PKP1 Genopedia 1 0
    PON2 Genopedia 1 0
    PON3 Genopedia 1 0
    DGCR8 Genopedia 1 0
    ATR Genopedia 1 0
    UGT1A7 Genopedia 1 0
    POU5F1 Genopedia 1 0
    BSPRY Genopedia 1 0
    CDKAL1 Genopedia 1 0
    TBX5 Genopedia 1 0
    TBX15 Genopedia 1 0
    TCEB3 Genopedia 1 0
    HNF1A Genopedia 1 0
    MIR552 Genopedia 1 0
    TCF12 Genopedia 1 0
    TCF21 Genopedia 1 0
    TCN1 Genopedia 1 0
    BRCA2 Genopedia 1 0
    STAT3 Genopedia 1 0
    SULT1A1 Genopedia 1 0
    ADAM17 Genopedia 1 0
    TNNT3 Genopedia 1 0
    TNP1 Genopedia 1 0
    TNS1 Genopedia 1 0
    TRAF6 Genopedia 1 0
    CCT3 Genopedia 1 0
    TRIO Genopedia 1 0
    TRPS1 Genopedia 1 0
    TULP3 Genopedia 1 0
    TWIST1 Genopedia 1 0
    TGFB2 Genopedia 1 0
    TGFBR3 Genopedia 1 0
    TGIF1 Genopedia 1 0
    THRB Genopedia 1 0
    BLM Genopedia 1 0
    SET Genopedia 1 0
    MMP25 Genopedia 1 0
    CSMD1 Genopedia 1 0
    SHMT2 Genopedia 1 0
    SLC30A5 Genopedia 1 0
    SIX3 Genopedia 1 0
    SALL2 Genopedia 1 0
    SALL1 Genopedia 1 0
    SC5DL Genopedia 1 0
    CCL2 Genopedia 1 0
    SDC2 Genopedia 1 0
    FSCN1 Genopedia 1 0
    SOD1 Genopedia 1 0
    SOD2 Genopedia 1 0
    SOD3 Genopedia 1 0
    SOX1 Genopedia 1 0
    SOX4 Genopedia 1 0
    SOX5 Genopedia 1 0
    SOX9 Genopedia 1 0
    SPAM1 Genopedia 1 0
    SPP1 Genopedia 1 0
    BMPR1B Genopedia 1 0
    BMPR2 Genopedia 1 0
    SNAI2 Genopedia 1 0
    SMO Genopedia 1 0
    SUMO3 Genopedia 1 0
    SUMO2 Genopedia 1 0
    SLC6A4 Genopedia 1 0
    BMP6 Genopedia 1 0
    BMP7 Genopedia 1 0
    BMPR1A Genopedia 1 0
    JAG1 Genopedia 1 0
    DSP Genopedia 1 0
    SLC26A2 Genopedia 1 0
    DVL1 Genopedia 1 0
    DLX5 Genopedia 1 0
    DLX6 Genopedia 1 0
    DMD Genopedia 1 0
    Msx1 Genopedia 1 1
    CRHR1 Genopedia 1 0
    CRMP1 Genopedia 1 0
    RBFOX3 Genopedia 1 1
    ZNF714 Genopedia 1 0
    NQO1 Genopedia 1 0
    DLG1 Genopedia 1 0
    ZNF385B Genopedia 1 0
    EGF Genopedia 1 0
    EGFR Genopedia 1 0
    AHR Genopedia 1 0
    EGR3 Genopedia 1 0
    ELAVL2 Genopedia 1 1
    EMX2 Genopedia 1 0
    EPHA3 Genopedia 1 0
    EPHB2 Genopedia 1 0
    EPHB3 Genopedia 1 0
    EPS15 Genopedia 1 0
    ERCC2 Genopedia 1 0
    ERCC4 Genopedia 1 0
    ESR1 Genopedia 1 0
    ESR2 Genopedia 1 0
    ESRRB Genopedia 1 0
    ETV5 Genopedia 1 0
    MECOM Genopedia 1 0
    EYA1 Genopedia 1 0
    ALDH1A1 Genopedia 1 0
    F13A1 Genopedia 1 0
    Ift88 Genopedia 1 0
    FBN2 Genopedia 1 0
    SP8 Genopedia 1 0
    E2F1 Genopedia 1 0
    ABCA1 Genopedia 1 0
    DLX3 Genopedia 1 0
    FGF5 Genopedia 1 0
    FGF7 Genopedia 1 0
    FOXC2 Genopedia 1 0
    FGFR3 Genopedia 1 0
    IQSEC2 Genopedia 1 0
    FLNB Genopedia 1 0
    FGFR4 Genopedia 1 0
    FKBP5 Genopedia 1 0
    DKK1 Genopedia 1 0
    CKM Genopedia 1 0
    OSR2 Genopedia 1 0
    APOA5 Genopedia 1 0
    APOA1BP Genopedia 1 0
    COL4A3 Genopedia 1 0
    COL4A4 Genopedia 1 0
    COL8A1 Genopedia 1 1
    TPH2 Genopedia 1 0
    UNQ1887 Genopedia 1 0
    PRR20A Genopedia 1 0
    CCR1 Genopedia 1 0
    CCR6 Genopedia 1 0
    ADH1A Genopedia 1 0
    ADH1B Genopedia 1 0
    ADH1C Genopedia 1 0
    ADH4 Genopedia 1 0
    ADH5 Genopedia 1 0
    COMT Genopedia 1 0
    EVC2 Genopedia 1 0
    CP Genopedia 1 0
    DCAF4L2 Genopedia 1 1
    CRABP1 Genopedia 1 0
    RIPK3 Genopedia 1 0
    FOXN3 Genopedia 1 0
    CYP1A2 Genopedia 1 0
    CYP1B1 Genopedia 1 0
    CYP3A7 Genopedia 1 0
    CYP2D6 Genopedia 1 0
    CYP2E1 Genopedia 1 0
    C14orf49 Genopedia 1 0
    DEFB1 Genopedia 1 0
    ZNF431 Genopedia 1 0
    DHCR7 Genopedia 1 0
    DHCR24 Genopedia 1 0
    CDSN Genopedia 1 0
    FST Genopedia 1 0
    SPTLC1 Genopedia 1 0
    POMT1 Genopedia 1 0
    CDKN1C Genopedia 1 0
    TNIP1 Genopedia 1 0
    IRF9 Genopedia 1 0
    CDH2 Genopedia 1 0
    SHFM3 Genopedia 1 0
    MIR1255A Genopedia 1 0
    RAD50 Genopedia 1 0
    SLC25A13 Genopedia 1 0
    DCAF7 Genopedia 1 0
    SPRY1 Genopedia 1 0
    FZD10 Genopedia 1 0
    DDX20 Genopedia 1 0
    FILIP1L Genopedia 1 1
    SLC46A1 Genopedia 1 0
    CHRNA4 Genopedia 1 0
    CHUK Genopedia 1 0
    C1QTNF3 Genopedia 1 0
    GADD45G Genopedia 1 1
    SMC2 Genopedia 1 0
    LEFTY1 Genopedia 1 0
    CETP Genopedia 1 0
    RAI1 Genopedia 1 0
    CHL1 Genopedia 1 0
    OR6B2 Genopedia 1 0
    GDF6 Genopedia 1 0
    LCAT Genopedia 1 0
    LDLR Genopedia 1 0
    LIMK1 Genopedia 1 0
    LIPC Genopedia 1 0
    LMX1B Genopedia 1 0
    LOR Genopedia 1 0
    LPL Genopedia 1 0
    TAG Genopedia 1 0
    ARNT Genopedia 1 0
    MIR140 Genopedia 1 0
    MIR143 Genopedia 1 0
    MIR146A Genopedia 1 0
    SMAD1 Genopedia 1 0
    SMAD2 Genopedia 1 0
    SMAD3 Genopedia 1 0
    SMAD4 Genopedia 1 0
    MAF Genopedia 1 1
    MAOA Genopedia 1 0
    ARVCF Genopedia 1 0
    MEOX2 Genopedia 1 0
    MICA Genopedia 1 0
    MID1 Genopedia 1 0
    MLH1 Genopedia 1 0
    MLLT3 Genopedia 1 0
    MMP1 Genopedia 1 0
    APOE Genopedia 1 0
    INHBA Genopedia 1 0
    INHBB Genopedia 1 0
    AR Genopedia 1 0
    ISL1 Genopedia 1 0
    ITGB3 Genopedia 1 0
    NPY Genopedia 1 0
    NOTCH3 Genopedia 1 0
    ROR1 Genopedia 1 0
    ATIC Genopedia 1 0
    ATM Genopedia 1 0
    NNMT Genopedia 1 0
    MYL2 Genopedia 1 0
    MT1A Genopedia 1 0
    MMP14 Genopedia 1 0
    MN1 Genopedia 1 0
    ASL Genopedia 1 0
    MRE11A Genopedia 1 0
    MSH2 Genopedia 1 0
    ASS1 Genopedia 1 0
    KIF7 Genopedia 1 0
    KCNJ2 Genopedia 1 0
    KRT14 Genopedia 1 0
    MSH6 Genopedia 1 0
    AMT Genopedia 1 0
    GOLGB1 Genopedia 1 0
    MKX Genopedia 1 0
    PRTG Genopedia 1 0
    GRID2 Genopedia 1 1
    GLRA2 Genopedia 1 0
    GLRB Genopedia 1 0
    GRLF1 Genopedia 1 0
    DROSHA Genopedia 1 0
    TBK1 Genopedia 1 0
    GSTA4 Genopedia 1 0
    GSTM3 Genopedia 1 0
    APEX1 Genopedia 1 0
    HSD11B2 Genopedia 1 0
    HSP90AA1 Genopedia 1 0
    APOA1 Genopedia 1 0
    HYAL1 Genopedia 1 0
    APOB Genopedia 1 0
    IDH1 Genopedia 1 0
    APOC2 Genopedia 1 0
    ACACB Genopedia 1 0
    HOXA7 Genopedia 1 0
    HOXB6 Genopedia 1 0
    SLC39A3 Genopedia 1 0
    TBX21 Genopedia 1 0
    NRG1 Genopedia 1 1
    HIC1 Genopedia 1 0
    FZD2 Genopedia 1 0
    GABRA6 Genopedia 1 0
    SYT14 Genopedia 1 0
    SLC7A11 Genopedia 1 0
    CUX2 Genopedia 1 0
    FN1 Genopedia 1 0
    AHCYL2 Genopedia 1 0
    DICER1 Genopedia 1 0
    GAD2 Genopedia 1 0
    BAMBI Genopedia 1 0
    VAX2 Genopedia 1 0
    NIPBL Genopedia 1 0
    MTHFD1L Genopedia 1 0
    PVRL3 Genopedia 1 0
    TANC2 Genopedia 1 0
    PRPF31 Genopedia 1 0
    GART Genopedia 1 0
    PITPNC1 Genopedia 1 0
    GCH1 Genopedia 1 0
    GDF1 Genopedia 1 0
    GJB2 Genopedia 1 0
    B3GAT1 Genopedia 1 0
    SALL3 Genopedia 1 0
    SLC39A1 Genopedia 1 0
    BMP10 Genopedia 1 0
    ALX3 Genopedia 1 0
Note: The number of publications displayed in this table will differ from the number displayed in the HuGE Literature Finder as the number in Phenopedia reflects only the indexed disease term, but the number in the HuGE Literature Finder reflects all text searches of the disease term including the indexed term.
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