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HuGE Navigator|Phenopedia|PHGKB

Phenopedia


Cleft Palate
572 genes has been reported with Cleft Palate
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Associated Gene
Total Publication
Meta-analysis Publication
    NHLH1 Genopedia 92 16
    IRF6 Genopedia 76 7
    MTHFR Genopedia 52 7
    MSX1 Genopedia 30 1
    TGFA Genopedia 29 2
    TGFB3 Genopedia 26 0
    FOXE1 Genopedia 23 4
    BMP4 Genopedia 21 2
    MAFB Genopedia 18 1
    VAX1 Genopedia 15 1
    PAX7 Genopedia 14 1
    PVRL1 Genopedia 13 0
    ABCA4 Genopedia 13 2
    MTR Genopedia 13 2
    MTRR Genopedia 13 3
    MTHFD1 Genopedia 11 1
    BHMT Genopedia 11 0
    CBS Genopedia 11 0
    SUMO1 Genopedia 11 0
    CRISPLD2 Genopedia 11 1
    ARHGAP29 Genopedia 10 0
    BHMT2 Genopedia 10 0
    FGFR1 Genopedia 9 0
    CDH1 Genopedia 9 0
    WNT3 Genopedia 9 1
    BCL3 Genopedia 9 0
    GRHL3 Genopedia 9 0
    RARA Genopedia 8 0
    PAX9 Genopedia 8 0
    TCN2 Genopedia 8 2
    NTN1 Genopedia 8 1
    JAG2 Genopedia 8 0
    COTL1 Genopedia 7 0
    SATB2 Genopedia 7 1
    GREM1 Genopedia 7 0
    NAT2 Genopedia 7 0
    SPRY2 Genopedia 7 1
    CEBPB Genopedia 7 1
    TBX22 Genopedia 7 0
    SKI Genopedia 6 0
    SLC19A1 Genopedia 6 0
    WNT5A Genopedia 6 0
    AXIN2 Genopedia 6 0
    WNT9B Genopedia 6 0
    CLPTM1 Genopedia 6 0
    FGF10 Genopedia 6 0
    TBX10 Genopedia 6 0
    GSTT1 Genopedia 5 0
    MSX2 Genopedia 5 0
    MMP3 Genopedia 5 0
    SMG1 Genopedia 5 1
    GABRB3 Genopedia 5 0
    GLI2 Genopedia 5 0
    GSTM1 Genopedia 5 0
    DMGDH Genopedia 5 0
    FGFR2 Genopedia 5 0
    MTHFS Genopedia 5 0
    RFC1 Genopedia 5 0
    TYMS Genopedia 5 0
    TP63 Genopedia 5 1
    WNT3A Genopedia 5 0
    NAT1 Genopedia 5 0
    KIAA1598 Genopedia 5 2
    MYH9 Genopedia 4 0
    SHH Genopedia 4 0
    BMP2 Genopedia 4 0
    TCOF1 Genopedia 4 0
    TFAP2A Genopedia 4 0
    RUNX2 Genopedia 4 0
    WNT10A Genopedia 4 0
    TIMP2 Genopedia 4 0
    TNF Genopedia 4 1
    MTHFD2 Genopedia 4 0
    COL2A1 Genopedia 4 0
    CTNNB1 Genopedia 4 0
    FGF1 Genopedia 4 0
    FOLR1 Genopedia 4 0
    FOLR2 Genopedia 4 0
    LHX8 Genopedia 4 0
    GSTP1 Genopedia 4 0
    MAT2A Genopedia 3 0
    GNMT Genopedia 3 0
    FGF2 Genopedia 3 0
    FGF12 Genopedia 3 0
    FGF8 Genopedia 3 0
    EPHX1 Genopedia 3 0
    CYP1A1 Genopedia 3 0
    DHFR Genopedia 3 0
    EDN1 Genopedia 3 0
    AHCY Genopedia 3 0
    CREBBP Genopedia 3 0
    ALDH1L1 Genopedia 3 0
    TPM1 Genopedia 3 0
    WNT11 Genopedia 3 0
    NOG Genopedia 3 0
    TGFB1 Genopedia 3 0
    TGFBR1 Genopedia 3 0
    SNAI1 Genopedia 3 0
    SHMT1 Genopedia 3 0
    THADA Genopedia 3 1
    PVRL2 Genopedia 3 0
    RYK Genopedia 3 0
    NOS3 Genopedia 3 0
    PDGFRA Genopedia 3 0
    PTCH1 Genopedia 3 0
    PON1 Genopedia 3 0
    PDGFC Genopedia 3 0
    CHDH Genopedia 2 0
    PITX2 Genopedia 2 0
    STX18 Genopedia 2 0
    PCYT1A Genopedia 2 0
    NBN Genopedia 2 0
    PAX3 Genopedia 2 0
    PAX6 Genopedia 2 0
    ROR2 Genopedia 2 0
    OFC1 Genopedia 2 1
    SDC2 Genopedia 2 0
    PRDM16 Genopedia 2 0
    TBX1 Genopedia 2 0
    TGFBR2 Genopedia 2 0
    LEFTY2 Genopedia 2 0
    BRCA1 Genopedia 2 0
    FGF18 Genopedia 2 0
    ACTN1 Genopedia 2 0
    FGFBP1 Genopedia 2 0
    WNT8A Genopedia 2 0
    FAM49A Genopedia 2 0
    CALML3 Genopedia 2 2
    WNT5B Genopedia 2 0
    WNT6 Genopedia 2 0
    AXIN1 Genopedia 2 0
    RHPN2 Genopedia 2 0
    PTCH2 Genopedia 2 0
    TTF2 Genopedia 2 0
    TIMP3 Genopedia 2 0
    VCL Genopedia 2 0
    FTCD Genopedia 2 0
    CHKA Genopedia 2 0
    PEMT Genopedia 2 0
    COL11A1 Genopedia 2 0
    COL11A2 Genopedia 2 0
    CPO Genopedia 2 1
    CP Genopedia 2 0
    CCDC26 Genopedia 2 0
    ADCY9 Genopedia 2 0
    DVL2 Genopedia 2 0
    DNTT Genopedia 2 0
    EGFR Genopedia 2 0
    DLX1 Genopedia 2 0
    DLX2 Genopedia 2 0
    DLX4 Genopedia 2 0
    EVC Genopedia 2 0
    FGF9 Genopedia 2 0
    FGF3 Genopedia 2 0
    FGF4 Genopedia 2 0
    FOXF2 Genopedia 2 0
    GLI3 Genopedia 2 0
    MAT2B Genopedia 2 0
    HIF1A Genopedia 2 0
    GSK3B Genopedia 2 0
    NR3C1 Genopedia 2 0
    FOLR3 Genopedia 2 0
    GTPBP4 Genopedia 2 0
    FOLH1 Genopedia 2 0
    CTH Genopedia 2 0
    GJA1 Genopedia 2 0
    DIEXF Genopedia 2 0
    GJB2 Genopedia 2 0
    GAD1 Genopedia 2 0
    MAT1A Genopedia 2 0
    JARID2 Genopedia 2 0
    MMP9 Genopedia 2 0
    MMP13 Genopedia 2 0
    MMP2 Genopedia 2 0
    MYC Genopedia 2 0
    APC Genopedia 2 0
    KRT18 Genopedia 2 1
    OR6B2 Genopedia 1 0
    GDF6 Genopedia 1 0
    LCAT Genopedia 1 0
    LDLR Genopedia 1 0
    LIMK1 Genopedia 1 0
    LIPC Genopedia 1 0
    LMX1B Genopedia 1 0
    LOR Genopedia 1 0
    LPL Genopedia 1 0
    TAG Genopedia 1 0
    ARNT Genopedia 1 0
    MIR140 Genopedia 1 0
    MIR143 Genopedia 1 0
    MIR146A Genopedia 1 0
    SMAD1 Genopedia 1 0
    SMAD2 Genopedia 1 0
    SMAD3 Genopedia 1 0
    SMAD4 Genopedia 1 0
    MAF Genopedia 1 1
    MAOA Genopedia 1 0
    APEX1 Genopedia 1 0
    HSD11B2 Genopedia 1 0
    HSP90AA1 Genopedia 1 0
    APOA1 Genopedia 1 0
    HYAL1 Genopedia 1 0
    APOB Genopedia 1 0
    IDH1 Genopedia 1 0
    APOC2 Genopedia 1 0
    APOE Genopedia 1 0
    INHBA Genopedia 1 0
    INHBB Genopedia 1 0
    AR Genopedia 1 0
    ISL1 Genopedia 1 0
    ITGB3 Genopedia 1 0
    MT1A Genopedia 1 0
    MMP14 Genopedia 1 0
    MN1 Genopedia 1 0
    ASL Genopedia 1 0
    MRE11A Genopedia 1 0
    MSH2 Genopedia 1 0
    ASS1 Genopedia 1 0
    KIF7 Genopedia 1 0
    KCNJ2 Genopedia 1 0
    KRT14 Genopedia 1 0
    MSH6 Genopedia 1 0
    ARVCF Genopedia 1 0
    MEOX2 Genopedia 1 0
    MICA Genopedia 1 0
    MID1 Genopedia 1 0
    MLH1 Genopedia 1 0
    MLLT3 Genopedia 1 0
    MMP1 Genopedia 1 0
    GAD2 Genopedia 1 0
    BAMBI Genopedia 1 0
    VAX2 Genopedia 1 0
    NIPBL Genopedia 1 0
    MTHFD1L Genopedia 1 0
    PVRL3 Genopedia 1 0
    TANC2 Genopedia 1 0
    PRPF31 Genopedia 1 0
    GART Genopedia 1 0
    PITPNC1 Genopedia 1 0
    GCH1 Genopedia 1 0
    GDF1 Genopedia 1 0
    FOXP1 Genopedia 1 0
    B3GAT1 Genopedia 1 0
    SALL3 Genopedia 1 0
    SLC39A1 Genopedia 1 0
    SLC7A11 Genopedia 1 0
    IQSEC2 Genopedia 1 0
    FLNB Genopedia 1 0
    CUX2 Genopedia 1 0
    FN1 Genopedia 1 0
    AHCYL2 Genopedia 1 0
    DICER1 Genopedia 1 0
    GRLF1 Genopedia 1 0
    DROSHA Genopedia 1 0
    TBK1 Genopedia 1 0
    GSK3A Genopedia 1 0
    GSTA4 Genopedia 1 0
    GSTM3 Genopedia 1 0
    ACACB Genopedia 1 0
    HOXA7 Genopedia 1 0
    HOXB6 Genopedia 1 0
    SLC39A3 Genopedia 1 0
    TBX21 Genopedia 1 0
    NRG1 Genopedia 1 1
    HIC1 Genopedia 1 0
    AMT Genopedia 1 0
    GOLGB1 Genopedia 1 0
    MKX Genopedia 1 0
    PRTG Genopedia 1 0
    ANK3 Genopedia 1 0
    GRID2 Genopedia 1 1
    GLRA2 Genopedia 1 0
    GLRB Genopedia 1 0
    BMP10 Genopedia 1 0
    ALX3 Genopedia 1 0
    FZD2 Genopedia 1 0
    GABRA6 Genopedia 1 0
    SYT14 Genopedia 1 0
    FOXC2 Genopedia 1 0
    FGFR3 Genopedia 1 0
    FGFR4 Genopedia 1 0
    FKBP5 Genopedia 1 0
    DKK1 Genopedia 1 0
    FGF5 Genopedia 1 0
    FGF7 Genopedia 1 0
    MECOM Genopedia 1 0
    EYA1 Genopedia 1 0
    ALDH1A1 Genopedia 1 0
    F13A1 Genopedia 1 0
    Ift88 Genopedia 1 0
    FBN2 Genopedia 1 0
    SP8 Genopedia 1 0
    EPS15 Genopedia 1 0
    ERCC2 Genopedia 1 0
    ERCC4 Genopedia 1 0
    ESR1 Genopedia 1 0
    ESR2 Genopedia 1 0
    ESRRB Genopedia 1 0
    ESRRG Genopedia 1 0
    ETV5 Genopedia 1 0
    DLX5 Genopedia 1 0
    DLX6 Genopedia 1 0
    DMD Genopedia 1 0
    Msx1 Genopedia 1 1
    DLX3 Genopedia 1 0
    NQO1 Genopedia 1 0
    DLG1 Genopedia 1 0
    CYP1A2 Genopedia 1 0
    CYP1B1 Genopedia 1 0
    CYP2A6 Genopedia 1 0
    CYP3A7 Genopedia 1 0
    CYP2D6 Genopedia 1 0
    CYP2E1 Genopedia 1 0
    C14orf49 Genopedia 1 0
    AP2B1 Genopedia 1 0
    DEFB1 Genopedia 1 0
    ZNF431 Genopedia 1 0
    DHCR7 Genopedia 1 0
    DHCR24 Genopedia 1 0
    AHR Genopedia 1 0
    EGR3 Genopedia 1 0
    ELAVL2 Genopedia 1 1
    EMX2 Genopedia 1 0
    EPHA3 Genopedia 1 0
    EPHB2 Genopedia 1 0
    EPHB3 Genopedia 1 0
    JAG1 Genopedia 1 0
    DSP Genopedia 1 0
    SLC26A2 Genopedia 1 0
    DVL1 Genopedia 1 0
    E2F1 Genopedia 1 0
    ABCA1 Genopedia 1 0
    EGF Genopedia 1 0
    CKM Genopedia 1 0
    OSR2 Genopedia 1 0
    APOA5 Genopedia 1 0
    MRPL53 Genopedia 1 0
    APOA1BP Genopedia 1 0
    COL4A3 Genopedia 1 0
    COL4A4 Genopedia 1 0
    COL8A1 Genopedia 1 1
    TPH2 Genopedia 1 0
    UNQ1887 Genopedia 1 0
    PRR20A Genopedia 1 0
    CCR1 Genopedia 1 0
    CCR6 Genopedia 1 0
    ADH1A Genopedia 1 0
    ADH1B Genopedia 1 0
    ADH1C Genopedia 1 0
    ADH4 Genopedia 1 0
    ADH5 Genopedia 1 0
    DCAF4L2 Genopedia 1 1
    CRABP1 Genopedia 1 0
    COMT Genopedia 1 0
    EVC2 Genopedia 1 0
    CRHR1 Genopedia 1 0
    CRMP1 Genopedia 1 0
    RBFOX3 Genopedia 1 1
    ZNF714 Genopedia 1 0
    ZNF385B Genopedia 1 0
    RIPK3 Genopedia 1 0
    FOXN3 Genopedia 1 0
    CDSN Genopedia 1 0
    FST Genopedia 1 0
    SPTLC1 Genopedia 1 0
    POMT1 Genopedia 1 0
    CDKN1C Genopedia 1 0
    TNIP1 Genopedia 1 0
    IRF9 Genopedia 1 0
    CDH2 Genopedia 1 0
    SHFM3 Genopedia 1 0
    MIR1255A Genopedia 1 0
    RAD50 Genopedia 1 0
    SLC25A13 Genopedia 1 0
    GDF11 Genopedia 1 0
    DCAF7 Genopedia 1 0
    SPRY1 Genopedia 1 0
    FZD10 Genopedia 1 0
    DDX20 Genopedia 1 0
    FILIP1L Genopedia 1 1
    SLC46A1 Genopedia 1 0
    CHRNA4 Genopedia 1 0
    CHUK Genopedia 1 0
    C1QTNF3 Genopedia 1 0
    GADD45G Genopedia 1 1
    SMC2 Genopedia 1 0
    SLCO1B1 Genopedia 1 0
    LEFTY1 Genopedia 1 0
    CETP Genopedia 1 0
    RAI1 Genopedia 1 0
    CHL1 Genopedia 1 0
    WHSC1 Genopedia 1 0
    UFD1L Genopedia 1 0
    TRAF6 Genopedia 1 0
    CCT3 Genopedia 1 0
    TRIO Genopedia 1 0
    TRPS1 Genopedia 1 0
    TULP3 Genopedia 1 0
    TWIST1 Genopedia 1 0
    TNNT3 Genopedia 1 0
    TNP1 Genopedia 1 0
    TNS1 Genopedia 1 0
    XRCC1 Genopedia 1 0
    XRCC3 Genopedia 1 0
    ZNF189 Genopedia 1 0
    ZNF236 Genopedia 1 0
    SLC30A1 Genopedia 1 0
    SLC30A4 Genopedia 1 0
    PAX8 Genopedia 1 0
    CRELD1 Genopedia 1 0
    MMEL1 Genopedia 1 0
    MYH14 Genopedia 1 0
    BAALC Genopedia 1 0
    SCD5 Genopedia 1 0
    ADAMTS20 Genopedia 1 0
    FRAS1 Genopedia 1 0
    FUZ Genopedia 1 0
    CASR Genopedia 1 0
    LOXL3 Genopedia 1 0
    OFD1 Genopedia 1 0
    BARX2 Genopedia 1 0
    BRIP1 Genopedia 1 0
    KREMEN1 Genopedia 1 0
    FOXN1 Genopedia 1 0
    MT4 Genopedia 1 0
    SERPINA6 Genopedia 1 0
    TP73L Genopedia 1 1
    PIAS1 Genopedia 1 0
    WNT7A Genopedia 1 0
    WNT7B Genopedia 1 0
    SLC7A5 Genopedia 1 0
    TRIM8 Genopedia 1 0
    FZD1 Genopedia 1 0
    FZD4 Genopedia 1 0
    FZD7 Genopedia 1 0
    FZD8 Genopedia 1 0
    CRISPLD1 Genopedia 1 0
    WDR1 Genopedia 1 0
    FGF19 Genopedia 1 0
    HAND2 Genopedia 1 0
    TBX4 Genopedia 1 0
    GABBR2 Genopedia 1 0
    ARHGEF10 Genopedia 1 0
    IKBKE Genopedia 1 0
    SH3PXD2A Genopedia 1 0
    ZEB2 Genopedia 1 0
    ARNT2 Genopedia 1 0
    SNX3 Genopedia 1 0
    TNFRSF10B Genopedia 1 0
    FOXH1 Genopedia 1 0
    GLB1L2 Genopedia 1 0
    MSC Genopedia 1 0
    PIWIL1 Genopedia 1 0
    PPIG Genopedia 1 0
    NRXN2 Genopedia 1 0
    FOXP2 Genopedia 1 0
    ACVR1 Genopedia 1 0
    AIP Genopedia 1 0
    PIAS2 Genopedia 1 0
    BRCA2 Genopedia 1 0
    STAT3 Genopedia 1 0
    SULT1A1 Genopedia 1 0
    ADAM17 Genopedia 1 0
    TGFB2 Genopedia 1 0
    TGFBR3 Genopedia 1 0
    TGIF1 Genopedia 1 0
    THRB Genopedia 1 0
    TBX5 Genopedia 1 0
    TBX15 Genopedia 1 0
    TCEB3 Genopedia 1 0
    HNF1A Genopedia 1 0
    MIR552 Genopedia 1 0
    TCF12 Genopedia 1 0
    TCF21 Genopedia 1 0
    TCN1 Genopedia 1 0
    FSCN1 Genopedia 1 0
    SOD1 Genopedia 1 0
    SOD2 Genopedia 1 0
    SOD3 Genopedia 1 0
    SOX1 Genopedia 1 0
    SOX4 Genopedia 1 0
    SOX5 Genopedia 1 0
    SOX9 Genopedia 1 0
    SPAM1 Genopedia 1 0
    SPP1 Genopedia 1 0
    BLM Genopedia 1 0
    SET Genopedia 1 0
    MMP25 Genopedia 1 0
    CSMD1 Genopedia 1 0
    SHMT2 Genopedia 1 0
    SLC30A5 Genopedia 1 0
    SIX3 Genopedia 1 0
    BMPR1B Genopedia 1 0
    BMPR2 Genopedia 1 0
    SNAI2 Genopedia 1 0
    SMO Genopedia 1 0
    SUMO3 Genopedia 1 0
    SUMO2 Genopedia 1 0
    SLC6A4 Genopedia 1 0
    BMP6 Genopedia 1 0
    BMP7 Genopedia 1 0
    BMPR1A Genopedia 1 0
    RAD51 Genopedia 1 0
    SALL2 Genopedia 1 0
    SALL1 Genopedia 1 0
    SC5DL Genopedia 1 0
    CCL2 Genopedia 1 0
    ALX4 Genopedia 1 0
    RORA Genopedia 1 0
    RPL5 Genopedia 1 0
    RPL11 Genopedia 1 0
    RPL35A Genopedia 1 0
    RPS17 Genopedia 1 0
    RPS19 Genopedia 1 0
    RPS24 Genopedia 1 0
    RXRG Genopedia 1 0
    OGG1 Genopedia 1 0
    PAFAH1B1 Genopedia 1 0
    PAH Genopedia 1 0
    GEMIN4 Genopedia 1 0
    NNMT Genopedia 1 0
    ATIC Genopedia 1 0
    ATM Genopedia 1 0
    MYL2 Genopedia 1 0
    NPY Genopedia 1 0
    NOTCH3 Genopedia 1 0
    NTRK1 Genopedia 1 0
    ROR1 Genopedia 1 0
    PRRX2 Genopedia 1 0
    C9orf156 Genopedia 1 0
    PDGFA Genopedia 1 0
    LEF1 Genopedia 1 0
    PIPOX Genopedia 1 0
    PRRX1 Genopedia 1 0
    WNT4 Genopedia 1 0
    PKP1 Genopedia 1 0
    PEX7 Genopedia 1 0
    ABCB1 Genopedia 1 0
    PITX1 Genopedia 1 0
    STK32B Genopedia 1 0
    HEMGN Genopedia 1 0
    CHD7 Genopedia 1 0
    N4BP2 Genopedia 1 0
    CFC1 Genopedia 1 0
    BARX1 Genopedia 1 0
    PTEN Genopedia 1 0
    AHRR Genopedia 1 0
    XPO5 Genopedia 1 0
    MIB1 Genopedia 1 0
    SHROOM3 Genopedia 1 1
    MARK4 Genopedia 1 0
    PTPN11 Genopedia 1 0
    PTPRS Genopedia 1 0
    PVR Genopedia 1 0
    RARB Genopedia 1 0
    RARG Genopedia 1 0
    RET Genopedia 1 0
    SLC2A9 Genopedia 1 0
    SAR1A Genopedia 1 0
    IFNK Genopedia 1 0
    CEACAM19 Genopedia 1 0
    TULP4 Genopedia 1 0
    BACH1 Genopedia 1 0
    SALL4 Genopedia 1 0
    PON2 Genopedia 1 0
    PON3 Genopedia 1 0
    DGCR8 Genopedia 1 0
    ATR Genopedia 1 0
    UGT1A7 Genopedia 1 0
    POU5F1 Genopedia 1 0
    BSPRY Genopedia 1 0
    CDKAL1 Genopedia 1 0
Note: The number of publications displayed in this table will differ from the number displayed in the HuGE Literature Finder as the number in Phenopedia reflects only the indexed disease term, but the number in the HuGE Literature Finder reflects all text searches of the disease term including the indexed term.
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