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COVID-10 GPH

COVID-19 GPH|Home|PHGKB Last data update: Nov 30, 2021 . (Total: 28295 Documents since 2020)
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Last Posted: Nov-30-2021 09:30:23
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Real-time alerting system for COVID-19 and other stress events using wearable data
A Alavi et al, Nature Medicine, November 21, 2021

In a cohort of 3,318 participants, of whom 84 were infected with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), this system generated alerts for pre-symptomatic and asymptomatic SARS-CoV-2 infection in 67 (80%) of the infected individuals. Pre-symptomatic signals were observed at a median of 3 days before symptom onset.

Everyone Ages 18 and Older Should Get a Booster Shot
CDC, November 29, 2021

You may choose which COVID-19 vaccine you receive as a booster shot. Some people may?prefer?the vaccine type that they originally received, and others may prefer to get a different booster. CDC’s recommendations now allow for this type of mix and match dosing for?booster shots.

Covid-19: Omicron may be more transmissible than other variants and partly resistant to existing vaccines, scientists fear
I Torjesen, BMJ, November 29, 2021

Omicron, the SARS-CoV-2 variant responsible for a cluster of cases in South Africa and that is now spreading around the world, is the most heavily mutated variant to emerge so far and carries mutations similar to changes seen in previous variants of concern associated with enhanced transmissibility and partial resistance to vaccine induced immunity.

Show us the Data: Global COVID-19 Wastewater Monitoring Efforts, Equity, and Gaps
CC Naughton et al, MEDRXIV, November 28, 2021

Unlike COVID-19 case and mortality data, there was not a global dashboard to track wastewater monitoring of SARS-CoV-2 RNA worldwide. This study provides a one year review of the COVIDPoops19 global dashboard of universities, sites, and countries monitoring SARS-CoV-2 RNA in wastewater. Methods to assemble the dashboard combined standard literature review, direct submissions, and daily, social media keyword searches. Over 200 universities, 1,000 sites, and 55 countries with 59 dashboards monitor wastewater for SARS-CoV-2 RNA. However, monitoring is primarily in high-income countries (65 percent) with less access to this valuable tool in low and middle income countries (35 percent).


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A case series of SARS-CoV-2 reinfections caused by the variant of concern Gamma in Brazil
FG Naveca et al, MEDRXIV, November 29, 2021

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Third doses of COVID-19 vaccines reduce infection and transmission of SARS-CoV-2 and could prevent future surges in some populations: a modeling study
BJ Gardner et al, MEDRXIV, November 29, 2021

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Development and evaluation of a machine learning-based in-hospital COvid-19 Disease Outcome Predictor (CODOP): a multicontinental retrospective study
R Klen et al, MEDRXIV, November 29, 2021

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Mathematical modelling of SARS-CoV-2 variant outbreaks reveals their probability of extinction
H Schioler et al, November 29, 2021

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Use of Artificial Intelligence on spatio-temporal data to generate insights during COVID-19 pandemic: A Review
JC Jayatilaka et al, MEDRXIV, November 29, 2021

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Incorporating the mutational landscape of SARS-COV-2 variants and case-dependent vaccination rates into epidemic models
MM Chowdhury et al, November 29, 2021

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Artificial intelligence for imaging-based COVID-19 detection: Systematic review comparing added value of AI versus human readers.
Kriza Christine, et al. European journal of radiology 2021 0 0. 110028

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Clinical outcomes of COVID-19 in patients with sickle cell disease and sickle cell trait: A critical appraisal of the literature.
Hoogenboom Wouter S, et al. Blood reviews 2021 0 0. 100911

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Comparison of residential dormitory COVID-19 monitoring via weekly saliva testing and sewage monitoring.
Fahrenfeld N L, et al. The Science of the total environment 2021 0 0. 151947

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Insights into the evolutionary and prophylactic analysis of SARS-CoV-2: A review.
Akram Fatima, et al. Journal of virological methods 2021 0 0. 114375

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About COVID-19 GPH

COVID-19 GPH is an online, continuously updated, searchable database of published scientific literature, CDC and NIH resources, and other materials that captures emerging discoveries and applications of genomics, molecular and other precision medicine and precision public health tools in the investigation and control of COVID-19. Contents include PubMed records via an automated pubmed search algorithm, preprint records from NIH iCite, the relevant information from many media sources picked by experts, and linkages to contents from our curated PHGKB databases.
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Summary

All Records28295
Genomics Precision Health20050
Non-Genomics Precision Health8245

Special Topics

Publication Categories Brand

Mechanism 5658
Treatment 5216
Vaccines 5127
Variants 4812
Diagnosis 3806
Prevention 3434
Forecasting 2280
Surveillance 2148
Transmission 1185
Health Equity 723

Publication Types

PubMed Records20564
Preprints7197
Online News/Reports/Publications523

In PHGKB Databases

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Genomics Precision Health (GPH): The use of pathogen and human genomics and advanced molecular detection methods in discovery, clinical and public health investigations and response to COVID-19.
Non Genomics Precision Health (non-GPH): The use of big data, data science, digital health, machine learning and predictive analytic methods (not involving genomics) in discovery, clinical and public health investigations and response to COVID-19

Following categories are annotated by LitCovid from NCBI NIH.
MechanismUnderlying cause(s) of covid-19 infections and transmission & possible drug mechanism of action
Transmission Characteristics and modes of covid-19 transmissions, such as human-to-human
DiagnosisDisease assessment through symptoms, test results, and radiological features
PreventionPrevention, control, response and management strategies
Case ReportDescriptions of specific patient cases
ForecastingModelling and estimating the trend of covid-19 spread

Following categories are annotated by the text mining tool from CDC PHGKB
Health EquityRelevant to health equity. Search terms are derived from a list provided by the Association for Territorial Health Officials which include terms such as diversity, health disparities, and others.
VaccineRelevant to vaccine development, evaluation, implementation and impact. For additional information on vaccines and COVID-19. Check out general CDC Information pages
VariantRelevant to SARS-CoV-2 variants and their impact on public health. For additional information on variants COVID-19. Check out CDC New Variants of the Virus that Causes COVID-19 page
SurveillanceRelevant to SARS-CoV-2 public health surveillance and tracking. For additional information on COVID-19 surveillance, check out CDC COVID-19 Data Tracker

Disclaimer: Articles listed in the Public Health Genomics and Precision Health Knowledge Base are selected by the CDC Office of Public Health Genomics to provide current awareness of the literature and news. Inclusion in the update does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the update, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.

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