Last data update: Mar 21, 2025. (Total: 48935 publications since 2009)
Records 1-9 (of 9 Records) |
Query Trace: Weber JT[original query] |
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Protecting Privacy and Transforming COVID-19 Case Surveillance Datasets for Public Use.
Lee B , Dupervil B , Deputy NP , Duck W , Soroka S , Bottichio L , Silk B , Price J , Sweeney P , Fuld J , Weber JT , Pollock D . Public Health Rep 2021 136 (5) 333549211026817 OBJECTIVES: Federal open-data initiatives that promote increased sharing of federally collected data are important for transparency, data quality, trust, and relationships with the public and state, tribal, local, and territorial partners. These initiatives advance understanding of health conditions and diseases by providing data to researchers, scientists, and policymakers for analysis, collaboration, and use outside the Centers for Disease Control and Prevention (CDC), particularly for emerging conditions such as COVID-19, for which data needs are constantly evolving. Since the beginning of the pandemic, CDC has collected person-level, de-identified data from jurisdictions and currently has more than 8 million records. We describe how CDC designed and produces 2 de-identified public datasets from these collected data. METHODS: We included data elements based on usefulness, public request, and privacy implications; we suppressed some field values to reduce the risk of re-identification and exposure of confidential information. We created datasets and verified them for privacy and confidentiality by using data management platform analytic tools and R scripts. RESULTS: Unrestricted data are available to the public through Data.CDC.gov, and restricted data, with additional fields, are available with a data-use agreement through a private repository on GitHub.com. PRACTICE IMPLICATIONS: Enriched understanding of the available public data, the methods used to create these data, and the algorithms used to protect the privacy of de-identified people allow for improved data use. Automating data-generation procedures improves the volume and timeliness of sharing data. |
Difficult Places, Unexpected Discoveries
Breedlove B , Weber JT . Emerg Infect Dis 2019 25 (7) 1440-1 Microbes, including myriad pathogens, have demonstrated their tenacity and malleability to endure, even flourish, under extreme conditions thought to be inhospitable to life. These microbes evolve at a pace that proves hard to fathom: they can undergo as many as 500,000 generations during a single human generation. | | The proliferation and abundance of modern antibiotics have accelerated the pace of pathogens’ evolutionary adaptation through mutation and acquisition of genetic material conferring resistance from other species. The World Health Organization notes that new resistance mechanisms are emerging and spreading around the world and that without effective antimicrobials, treating infectious diseases is becoming increasingly challenging. | | Researchers Julian and Dorothy Davies offer this perspective: “What happened during the evolution of bacteria and other microbes and organisms over several billions of years cannot be compared to the phenomenon of antibiotic resistance development and transfer over the last century. Contemporary selection pressure of antibiotic use and disposal is much more intense; selection is largely for survival in hostile environments rather than for traits providing fitness in slowly evolving populations.” |
“No Water, No Life. No Blue, No Green”
Breedlove B , Weber JT . Emerg Infect Dis 2018 24 (4) 815-6 Water is the most precious and essential natural resource. If unadulterated and at room temperature, it is tasteless, odorless (to humans), and transparent. Water sustains life, reshapes topography, provides passage and conveyance, and delineates and destroys geopolitical boundaries. Water comprises ≈71% of Earth's surface, and the United States Geological Survey estimates that Earth is covered by more than 332,500,000 cubic miles (mi3) of water. Archaeology, history, and anthropology corroborate that most civilizations originated near water. American marine biologist Sylvia Earl offers this perspective: “No water, no life. No blue, no green.” | | Vivid blues and greens interspersed with layers of white splash across this month’s cover art, “Water Prayer I,” one of a series of water-related pieces from the portfolio of artist Patricia Goslee, who lives in Washington, DC, United States. Her abstract work points to the possibility of mutability and transformation in water. A hazy hatch work sweeps across the top of the painting and repeats in the lower right. Green and pale blue spheres of color float above the patterns. Dominating the image, a dense V-shaped amalgamation of speckled shapes—some uniform and others elongated—streaks diagonally across the center of the canvas while a column of undulating forms juts up along the left side. |
Antimicrobials in acute and long-term care: a point in time along the way to improved use
Neuhauser MM , Weber JT . Euro Surveill 2018 23 (46) Antimicrobial use is the most important modifiable factor contributing to resistance [1]. One key strategy against antimicrobial resistance that has the potential to improve patient outcomes is to optimise antimicrobial use. Understanding how antimicrobials are being used informs stewardship efforts in acute care, long-term care and outpatient settings [2]. In the acute care setting, stewardship programs encompass tracking and reporting aggregate antimicrobial use metrics, such as days of therapy or defined daily doses. Benchmarking use within and across facilities is helpful in identifying where action is needed. Antimicrobial use point prevalence surveys (PPS) complement the aggregate metrics by providing information on patient-level use, such as indication and site of infection during the specified time period [3,4]. This approach is able to reveal more targeted quality improvements and enables comparisons of antimicrobial use at the national, regional or local level. PPS may be particularly useful for resource-limited hospitals and long-term care facilities (LTCF) with restricted capabilities for capturing use data on a continual basis [5,6]. Since PPS evaluate antimicrobial use during a single time period, they need to be repeated at regular intervals to monitor trends over time. |
Infection prevention and control measures and tools for the prevention of entry of carbapenem-resistant Enterobacteriaceae into healthcare settings: guidance from the European Centre for Disease Prevention and Control
Magiorakos AP , Burns K , Rodriguez Bano J , Borg M , Daikos G , Dumpis U , Lucet JC , Moro ML , Tacconelli E , Simonsen GS , Szilagyi E , Voss A , Weber JT . Antimicrob Resist Infect Control 2017 6 113 Background: Infections with carbapenem-resistant Enterobacteriaceae (CRE) are increasingly being reported from patients in healthcare settings. They are associated with high patient morbidity, attributable mortality and hospital costs. Patients who are "at-risk" may be carriers of these multidrug-resistant Enterobacteriaceae (MDR-E).The purpose of this guidance is to raise awareness and identify the "at-risk" patient when admitted to a healthcare setting and to outline effective infection prevention and control measures to halt the entry and spread of CRE. Methods: The guidance was created by a group of experts who were functioning independently of their organisations, during two meetings hosted by the European Centre for Disease Prevention and Control. A list of epidemiological risk factors placing patients "at-risk" for carriage with CRE was created by the experts. The conclusions of a systematic review on the prevention of spread of CRE, with the addition of expert opinion, were used to construct lists of core and supplemental infection prevention and control measures to be implemented for "at-risk" patients upon admission to healthcare settings. Results: Individuals with the following profile are "at-risk" for carriage of CRE: a) a history of an overnight stay in a healthcare setting in the last 12 months, b) dialysis-dependent or cancer chemotherapy in the last 12 months, c) known previous carriage of CRE in the last 12 months and d) epidemiological linkage to a known carrier of a CRE.Core infection prevention and control measures that should be considered for all patients in healthcare settings were compiled. Preliminary supplemental measures to be implemented for "at-risk" patients on admission are: pre-emptive isolation, active screening for CRE, and contact precautions. Patients who are confirmed positive for CRE will need additional supplemental measures. Conclusions: Strengthening the microbiological capacity, surveillance and reporting of new cases of CRE in healthcare settings and countries is necessary to monitor the epidemiological situation so that, if necessary, the implemented CRE prevention strategies can be refined in a timely manner. Creating a large communication network to exchange this information would be helpful to understand the extent of the CRE reservoir and to prevent infections in healthcare settings, by applying the principles outlined here.This guidance document offers suggestions for best practices, but is in no way prescriptive for all healthcare settings and all countries. Successful implementation will result if there is local commitment and accountability. The options for intervention can be adopted or adapted to local needs, depending on the availability of financial and structural resources. |
A concise set of structure and process indicators to assess and compare antimicrobial stewardship programs among EU and US hospitals: Results from a multinational expert panel
Pollack LA , Plachouras D , Sinkowitz-Cochran R , Gruhler H , Monnet DL , Weber JT . Infect Control Hosp Epidemiol 2016 37 (10) 1-11 OBJECTIVES To develop common indicators, relevant to both EU member states and the United States, that characterize and allow for meaningful comparison of antimicrobial stewardship programs among different countries and healthcare systems. DESIGN Modified Delphi process. PARTICIPANTS A multinational panel of 20 experts in antimicrobial stewardship. METHODS Potential indicators were rated on the perceived feasibility to implement and measure each indicator and clinical importance for optimizing appropriate antimicrobial prescribing. RESULTS The outcome was a set of 33 indicators developed to characterize the infrastructure and activities of hospital antimicrobial stewardship programs. Among them 17 indicators were considered essential to characterize an antimicrobial stewardship program and therefore were included in a core set of indicators. The remaining 16 indicators were considered optional indicators and included in a supplemental set. CONCLUSIONS The integration of these indicators in public health surveillance and special studies will lead to a better understanding of best practices in antimicrobial stewardship. Additionally, future studies can explore the association of hospital antimicrobial stewardship programs to antimicrobial use and resistance. |
Notes from the field: Probable mucormycosis among adult solid organ transplant recipients at an acute care hospital - Pennsylvania, 2014-2015
Novosad SA , Vasquez AM , Nambiar A , Arduino MJ , Christensen E , Moulton-Meissner H , Keckler MS , Miller J , Perz JF , Lockhart SR , Chiller T , Gould C , Sehulster L , Brandt ME , Weber JT , Halpin AL , Mody RK . MMWR Morb Mortal Wkly Rep 2016 65 (18) 481-2 On September 17, 2015, the Pennsylvania Department of Health (PADOH) notified CDC of a cluster of three potentially health care-associated mucormycete infections that occurred among solid organ transplant recipients during a 12-month period at hospital A. On September 18, hospital B reported that it had identified an additional transplant recipient with mucormycosis. Hospitals A and B are part of the same health care system and are connected by a pedestrian bridge. PADOH requested CDC's assistance with an on-site investigation, which started on September 22, to identify possible sources of infection and prevent additional infections. |
Fungal infections associated with contaminated methylprednisolone injections - preliminary report
Smith RM , Schaefer MK , Kainer MA , Wise M , Finks J , Duwve J , Fontaine E , Chu A , Carothers B , Reilly A , Fiedler J , Wiese AD , Feaster C , Gibson L , Griese S , Purfield A , Cleveland AA , Benedict K , Harris JR , Brandt ME , Blau D , Jernigan J , Weber JT , Park BJ . N Engl J Med 2012 369 (17) 1598-609 BACKGROUND: Fungal infections are rare complications of injections for treatment of chronic pain. In September 2012, we initiated an investigation into fungal infections associated with injections of preservative-free methylprednisolone acetate that was purchased from a single compounding pharmacy. METHODS: Three lots of methylprednisolone acetate were recalled by the pharmacy; examination of unopened vials later revealed fungus. Notification of all persons potentially exposed to implicated methylprednisolone acetate was conducted by federal, state, and local public health officials and by staff at clinical facilities that administered the drug. We collected clinical data on standardized case-report forms, and we tested for the presence of fungi in isolates and specimens by examining cultures and performing polymerase-chain-reaction assays and histopathological and immunohistochemical testing. RESULTS: As of October 19, 2012, more than 99% of 13,534 potentially exposed persons had been contacted. As of December 10, there were 590 reported cases of infection in 19 states, with 37 deaths (6%). As of November 26, laboratory evidence of Exserohilum rostratum was present in specimens from 100 case patients (17%). Additional data were available for 386 case patients (65%); 300 of these patients (78%) had meningitis. Case patients had received a median of 1 injection (range, 1 to 6) of implicated methylprednisolone acetate. The median age of the patients was 64 years (range, 16 to 92), and the median incubation period was 20 days (range, 0 to 120); 33 patients (9%) had a stroke. CONCLUSIONS: Analysis of preliminary data from a large multistate outbreak of fungal infections showed substantial morbidity and mortality. The infections were associated with injection of a contaminated glucocorticoid medication from a single compounding pharmacy. Rapid public health actions included prompt recall of the implicated product, notification of exposed persons, and early outreach to clinicians. |
Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance
Magiorakos AP , Srinivasan A , Carey RB , Carmeli Y , Falagas ME , Giske CG , Harbarth S , Hindler JF , Kahlmeter G , Olsson-Liljequist B , Paterson DL , Rice LB , Stelling J , Struelens MJ , Vatopoulos A , Weber JT , Monnet DL . Clin Microbiol Infect 2012 18 (3) 268-281 Many different definitions for multidrug-resistant (MDR), extensively drug-resistant (XDR) and pandrug-resistant (PDR) bacteria are being used in the medical literature to characterize the different patterns of resistance found in healthcare-associated, antimicrobial-resistant bacteria. A group of international experts came together through a joint initiative by the European Centre for Disease Prevention and Control (ECDC) and the Centers for Disease Control and Prevention (CDC), to create a standardized international terminology with which to describe acquired resistance profiles in Staphylococcus aureus, Enterococcus spp., Enterobacteriaceae (other than Salmonella and Shigella), Pseudomonas aeruginosa and Acinetobacter spp., all bacteria often responsible for healthcare-associated infections and prone to multidrug resistance. Epidemiologically significant antimicrobial categories were constructed for each bacterium. Lists of antimicrobial categories proposed for antimicrobial susceptibility testing were created using documents and breakpoints from the Clinical Laboratory Standards Institute (CLSI), the European Committee on Antimicrobial Susceptibility Testing (EUCAST) and the United States Food and Drug Administration (FDA). MDR was defined as acquired non-susceptibility to at least one agent in three or more antimicrobial categories, XDR was defined as non-susceptibility to at least one agent in all but two or fewer antimicrobial categories (i.e. bacterial isolates remain susceptible to only one or two categories) and PDR was defined as non-susceptibility to all agents in all antimicrobial categories. To ensure correct application of these definitions, bacterial isolates should be tested against all or nearly all of the antimicrobial agents within the antimicrobial categories and selective reporting and suppression of results should be avoided. |
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