Last data update: Nov 22, 2024. (Total: 48197 publications since 2009)
Records 1-23 (of 23 Records) |
Query Trace: Steffens A[original query] |
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Accuracy of COVID-19-Like-Illness Diagnoses in Electronic Health Record Data: Retrospective Cohort Study.
Rao S , Bozio C , Butterfield K , Reynolds S , Reese S , Ball S , Steffens A , Demarco M , McEvoy C , Thompson M , Rowley E , Porter R , Fink R , Irving S , Naleway A . JMIR Form Res 2022 7 e39231 BACKGROUND: Electronic health record (EHR) data provide a unique opportunity to study the epidemiology of COVID-19, clinical outcomes, comparative effectiveness of therapies and vaccine effectiveness but require a well-defined computable phenotype of COVID-19-like illness (CLI). OBJECTIVE: The study objective was to evaluate the performance of pathogen-specific and other acute respiratory illness ICD-9 and 10 codes in identifying COVID-19 cases in emergency department/urgent care (ED/UC) and inpatient settings. METHODS: We conducted a retrospective observational cohort study using EHR, claims, and laboratory information systems data of ED/UC and inpatient encounters from four health systems in the US. Patients aged 18 years of age with an ED/UC or inpatient encounter for an acute respiratory illness (ARI) who underwent a SARS-CoV-2 PCR test between March 1, 2020 through March 31, 2021 were included. We evaluated various CLI definitions using combinations of ICD-10 codes as follows: a) COVID-19-specific codes; b) CLI definition used in VISION network studies (VISION CLI); c) ARI signs, symptoms and diagnosis codes only; d) signs and symptoms of ARI only; and e) random forest model definitions. We evaluated sensitivity, specificity, positive (PPV), and negative predictive value (NPV) of each CLI definition using a positive SARS-CoV-2 PCR test as the reference standard. We evaluated the performance of each CLI definition for distinct hospitalization and ED/UC cohorts. RESULTS: Among 90,952 hospitalizations and 137,067 ED/UC visits, 5,627 (6.2%) and 9,866 (7.2%) were positive for SARS-CoV-2, respectively. COVID-19-specific codes had high sensitivity (91.6%) and specificity (99.6%) in identifying patients with SARS-CoV-2 positivity for hospitalized patients. The VISION CLI definition maintained high sensitivity (95.8%) but lowered specificity (45.5%). In contrast, signs and symptoms of acute respiratory illness had low sensitivity and PPV (28.9% and 11.8% respectively), but higher specificity and NPV (85.3% and 94.7% respectively). ARI diagnoses or signs and symptoms alone had low predictive performance. All CLI definitions had lowered sensitivity for ED/UC encounters. Random forest approaches identified distinct CLI definitions with high performance for hospital encounters, and moderate performance for ED/UC encounters. CONCLUSIONS: COVID-19-specific codes have high sensitivity and specificity for identifying adults with positive SARS-CoV-2 tests. Separate combinations of COVID-19-specific codes and ARI codes enhance the utility of CLI definitions for studies using EHR data in hospital and ED/UC settings. |
Effectiveness of two-dose vaccination with mRNA COVID-19 vaccines against COVID-19-associated hospitalizations among immunocompromised adults-Nine States, January-September 2021.
Embi PJ , Levy ME , Naleway AL , Patel P , Gaglani M , Natarajan K , Dascomb K , Ong TC , Klein NP , Liao IC , Grannis SJ , Han J , Stenehjem E , Dunne MM , Lewis N , Irving SA , Rao S , McEvoy C , Bozio CH , Murthy K , Dixon BE , Grisel N , Yang DH , Goddard K , Kharbanda AB , Reynolds S , Raiyani C , Fadel WF , Arndorfer J , Rowley EA , Fireman B , Ferdinands J , Valvi NR , Ball SW , Zerbo O , Griggs EP , Mitchell PK , Porter RM , Kiduko SA , Blanton L , Zhuang Y , Steffens A , Reese SE , Olson N , Williams J , Dickerson M , McMorrow M , Schrag SJ , Verani JR , Fry AM , Azziz-Baumgartner E , Barron MA , Thompson MG , DeSilva MB . Am J Transplant 2022 22 (1) 306-314 Immunocompromised persons, defined as those with suppressed humoral or cellular immunity resulting from health conditions or medications, account for approximately 3% of the US adult population.1 Immunocompromised adults are at increased risk for severe COVID-19 outcomes2 and might not acquire the same level of protection from COVID-19 mRNA vaccines as do immunocompetent adults.3 , 4 To evaluate vaccine effectiveness (VE) among immunocompromised adults, data from the VISION Network1 on hospitalizations among persons aged ≥18 years with COVID-19–like illness from 187 hospitals in nine states during January 17–September 5, 2021 were analyzed. Using selected discharge diagnoses,2 VE against COVID-19–associated hospitalization conferred by completing a two-dose series of an mRNA COVID-19 vaccine ≥14 days before the index hospitalization date3 (i.e., being fully vaccinated) was evaluated using a test-negative design comparing 20,101 immunocompromised adults (10,564 [53%] of whom were fully vaccinated) and 69,116 immunocompetent adults (29,456 [43%] of whom were fully vaccinated). VE of two doses of mRNA COVID-19 vaccine against COVID-19–associated hospitalization was lower among immunocompromised patients (77%; 95% confidence interval [CI] = 74%–80%) than among immunocompetent patients (90%; 95% CI = 89%–91%). This difference persisted irrespective of mRNA vaccine product, age group, and timing of hospitalization relative to SARS-CoV-2 (the virus that causes COVID-19) B.1.617.2 (Delta) variant predominance in the state of hospitalization. VE varied across immunocompromising condition subgroups, ranging from 59% (organ or stem cell transplant recipients) to 81% (persons with a rheumatologic or inflammatory disorder). Immunocompromised persons benefit from mRNA COVID-19 vaccination but are less protected from severe COVID-19 outcomes than are immunocompetent persons, and VE varies among immunocompromised subgroups. Immunocompromised persons receiving mRNA COVID-19 vaccines should receive three doses and a booster, consistent with CDC recommendations,5 practice nonpharmaceutical interventions, and, if infected, be monitored closely and considered early for proven therapies that can prevent severe outcomes. |
Laboratory-Confirmed COVID-19 Among Adults Hospitalized with COVID-19-Like Illness with Infection-Induced or mRNA Vaccine-Induced SARS-CoV-2 Immunity - Nine States, January-September 2021.
Bozio CH , Grannis SJ , Naleway AL , Ong TC , Butterfield KA , DeSilva MB , Natarajan K , Yang DH , Rao S , Klein NP , Irving SA , Dixon BE , Dascomb K , Liao IC , Reynolds S , McEvoy C , Han J , Reese SE , Lewis N , Fadel WF , Grisel N , Murthy K , Ferdinands J , Kharbanda AB , Mitchell PK , Goddard K , Embi PJ , Arndorfer J , Raiyani C , Patel P , Rowley EA , Fireman B , Valvi NR , Griggs EP , Levy ME , Zerbo O , Porter RM , Birch RJ , Blanton L , Ball SW , Steffens A , Olson N , Williams J , Dickerson M , McMorrow M , Schrag SJ , Verani JR , Fry AM , Azziz-Baumgartner E , Barron M , Gaglani M , Thompson MG , Stenehjem E . MMWR Morb Mortal Wkly Rep 2021 70 (44) 1539-1544 Previous infection with SARS-CoV-2 (the virus that causes COVID-19) or COVID-19 vaccination can provide immunity and protection from subsequent SARS-CoV-2 infection and illness. CDC used data from the VISION Network* to examine hospitalizations in adults with COVID-19-like illness and compared the odds of receiving a positive SARS-CoV-2 test result, and thus having laboratory-confirmed COVID-19, between unvaccinated patients with a previous SARS-CoV-2 infection occurring 90-179 days before COVID-19-like illness hospitalization, and patients who were fully vaccinated with an mRNA COVID-19 vaccine 90-179 days before hospitalization with no previous documented SARS-CoV-2 infection. Hospitalized adults aged ≥18 years with COVID-19-like illness were included if they had received testing at least twice: once associated with a COVID-19-like illness hospitalization during January-September 2021 and at least once earlier (since February 1, 2020, and ≥14 days before that hospitalization). Among COVID-19-like illness hospitalizations in persons whose previous infection or vaccination occurred 90-179 days earlier, the odds of laboratory-confirmed COVID-19 (adjusted for sociodemographic and health characteristics) among unvaccinated, previously infected adults were higher than the odds among fully vaccinated recipients of an mRNA COVID-19 vaccine with no previous documented infection (adjusted odds ratio [aOR] = 5.49; 95% confidence interval [CI] = 2.75-10.99). These findings suggest that among hospitalized adults with COVID-19-like illness whose previous infection or vaccination occurred 90-179 days earlier, vaccine-induced immunity was more protective than infection-induced immunity against laboratory-confirmed COVID-19. All eligible persons should be vaccinated against COVID-19 as soon as possible, including unvaccinated persons previously infected with SARS-CoV-2. |
Effectiveness of 2-Dose Vaccination with mRNA COVID-19 Vaccines Against COVID-19-Associated Hospitalizations Among Immunocompromised Adults - Nine States, January-September 2021.
Embi PJ , Levy ME , Naleway AL , Patel P , Gaglani M , Natarajan K , Dascomb K , Ong TC , Klein NP , Liao IC , Grannis SJ , Han J , Stenehjem E , Dunne MM , Lewis N , Irving SA , Rao S , McEvoy C , Bozio CH , Murthy K , Dixon BE , Grisel N , Yang DH , Goddard K , Kharbanda AB , Reynolds S , Raiyani C , Fadel WF , Arndorfer J , Rowley EA , Fireman B , Ferdinands J , Valvi NR , Ball SW , Zerbo O , Griggs EP , Mitchell PK , Porter RM , Kiduko SA , Blanton L , Zhuang Y , Steffens A , Reese SE , Olson N , Williams J , Dickerson M , McMorrow M , Schrag SJ , Verani JR , Fry AM , Azziz-Baumgartner E , Barron MA , Thompson MG , DeSilva MB . MMWR Morb Mortal Wkly Rep 2021 70 (44) 1553-1559 Immunocompromised persons, defined as those with suppressed humoral or cellular immunity resulting from health conditions or medications, account for approximately 3% of the U.S. adult population (1). Immunocompromised adults are at increased risk for severe COVID-19 outcomes (2) and might not acquire the same level of protection from COVID-19 mRNA vaccines as do immunocompetent adults (3,4). To evaluate vaccine effectiveness (VE) among immunocompromised adults, data from the VISION Network* on hospitalizations among persons aged ≥18 years with COVID-19-like illness from 187 hospitals in nine states during January 17-September 5, 2021 were analyzed. Using selected discharge diagnoses,(†) VE against COVID-19-associated hospitalization conferred by completing a 2-dose series of an mRNA COVID-19 vaccine ≥14 days before the index hospitalization date(§) (i.e., being fully vaccinated) was evaluated using a test-negative design comparing 20,101 immunocompromised adults (10,564 [53%] of whom were fully vaccinated) and 69,116 immunocompetent adults (29,456 [43%] of whom were fully vaccinated). VE of 2 doses of mRNA COVID-19 vaccine against COVID-19-associated hospitalization was lower among immunocompromised patients (77%; 95% confidence interval [CI] = 74%-80%) than among immunocompetent patients (90%; 95% CI = 89%-91%). This difference persisted irrespective of mRNA vaccine product, age group, and timing of hospitalization relative to SARS-CoV-2 (the virus that causes COVID-19) B.1.617.2 (Delta) variant predominance in the state of hospitalization. VE varied across immunocompromising condition subgroups, ranging from 59% (organ or stem cell transplant recipients) to 81% (persons with a rheumatologic or inflammatory disorder). Immunocompromised persons benefit from mRNA COVID-19 vaccination but are less protected from severe COVID-19 outcomes than are immunocompetent persons, and VE varies among immunocompromised subgroups. Immunocompromised persons receiving mRNA COVID-19 vaccines should receive 3 doses and a booster, consistent with CDC recommendations (5), practice nonpharmaceutical interventions, and, if infected, be monitored closely and considered early for proven therapies that can prevent severe outcomes. |
Influenza vaccination rates and hospitalizations among Medicaid enrollees with and without sickle cell disease, 2009-2015
Payne AB , Adamkiewicz TV , Grosse SD , Steffens A , Shay DK , Reed C , Schieve LA . Pediatr Blood Cancer 2021 68 (12) e29351 BACKGROUND: Personswith sickle cell disease (SCD) face increased risks for pulmonary and infection-related complications. This study examines influenza vaccination coverage and estimates influenza-related morbidity among Medicaid enrollees with and without SCD. PROCEDURE: Influenza vaccination coverage and hospitalizations related to influenza and pneumonia/acute chest syndrome (ACS) during each influenza season from 2009-2010 to 2014-2015 were assessed among enrollees in the IBM MarketScan® Multi-State Medicaid Database. Enrollees with SCD were identified as enrollees with greater than or equal to three claims listing SCD within a 5-year period during 2003-2017. Vaccinations were identified in outpatient claims. Hospitalizations associated with influenza or pneumonia/ACS were identified using inpatient claims. This study includes a series of cross-sectional assessments by season. RESULTS: From 2009-2010 through 2014-2015 seasons, the SCD sample ranged from 5044 to 8651 enrollees; the non-SCD sample ranged from 1,841,756 to 3,796,337 enrollees. Influenza vaccination coverage was higher among enrollees with SCD compared with enrollees without SCD for all seasons (24.5%-33.6% and 18.2%-22.0%, respectively). Age-standardized rates of influenza-related hospitalizations were 20-42 times higher among SCD enrollees compared with non-SCD enrollees, and ACS/pneumonia hospitalizations were 18-29 times higher. Among enrollees with SCD, influenza-related hospitalization rates were highest among children aged 0-9 years. Among enrollees without SCD, influenza-related hospitalization rates were highest among adults aged 40-64 years. CONCLUSIONS: Although vaccine coverage was higher in persons with versus without SCD, efforts to increase influenza coverage further are warranted for this high-risk group, who experienced markedly higher rates of influenza and ACS/pneumonia hospitalizations during each season. |
Effectiveness of Covid-19 Vaccines in Ambulatory and Inpatient Care Settings.
Thompson MG , Stenehjem E , Grannis S , Ball SW , Naleway AL , Ong TC , DeSilva MB , Natarajan K , Bozio CH , Lewis N , Dascomb K , Dixon BE , Birch RJ , Irving SA , Rao S , Kharbanda E , Han J , Reynolds S , Goddard K , Grisel N , Fadel WF , Levy ME , Ferdinands J , Fireman B , Arndorfer J , Valvi NR , Rowley EA , Patel P , Zerbo O , Griggs EP , Porter RM , Demarco M , Blanton L , Steffens A , Zhuang Y , Olson N , Barron M , Shifflett P , Schrag SJ , Verani JR , Fry A , Gaglani M , Azziz-Baumgartner E , Klein NP . N Engl J Med 2021 385 (15) 1355-1371 BACKGROUND: There are limited data on the effectiveness of the vaccines against symptomatic coronavirus disease 2019 (Covid-19) currently authorized in the United States with respect to hospitalization, admission to an intensive care unit (ICU), or ambulatory care in an emergency department or urgent care clinic. METHODS: We conducted a study involving adults (≥50 years of age) with Covid-19-like illness who underwent molecular testing for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). We assessed 41,552 admissions to 187 hospitals and 21,522 visits to 221 emergency departments or urgent care clinics during the period from January 1 through June 22, 2021, in multiple states. The patients' vaccination status was documented in electronic health records and immunization registries. We used a test-negative design to estimate vaccine effectiveness by comparing the odds of a positive test for SARS-CoV-2 infection among vaccinated patients with those among unvaccinated patients. Vaccine effectiveness was adjusted with weights based on propensity-for-vaccination scores and according to age, geographic region, calendar time (days from January 1, 2021, to the index date for each medical visit), and local virus circulation. RESULTS: The effectiveness of full messenger RNA (mRNA) vaccination (≥14 days after the second dose) was 89% (95% confidence interval [CI], 87 to 91) against laboratory-confirmed SARS-CoV-2 infection leading to hospitalization, 90% (95% CI, 85 to 93) against infection leading to an ICU admission, and 91% (95% CI, 89 to 93) against infection leading to an emergency department or urgent care clinic visit. The effectiveness of full vaccination with respect to a Covid-19-associated hospitalization or emergency department or urgent care clinic visit was similar with the BNT162b2 and mRNA-1273 vaccines and ranged from 81% to 95% among adults 85 years of age or older, persons with chronic medical conditions, and Black or Hispanic adults. The effectiveness of the Ad26.COV2.S vaccine was 68% (95% CI, 50 to 79) against laboratory-confirmed SARS-CoV-2 infection leading to hospitalization and 73% (95% CI, 59 to 82) against infection leading to an emergency department or urgent care clinic visit. CONCLUSIONS: Covid-19 vaccines in the United States were highly effective against SARS-CoV-2 infection requiring hospitalization, ICU admission, or an emergency department or urgent care clinic visit. This vaccine effectiveness extended to populations that are disproportionately affected by SARS-CoV-2 infection. (Funded by the Centers for Disease Control and Prevention.). |
Influenza antiviral prescribing practices and the influence of rapid testing among primary care providers in the US, 2009-2016
Fowlkes AL , Steffens A , Reed C , Temte JL , Campbell AP . Open Forum Infect Dis 2019 6 (6) ofz192 Background: Early influenza antiviral treatment within 2 days of illness onset can reduce illness severity and duration. Reliance on low sensitivity rapid influenza diagnostic tests (RIDTs) to guide antiviral prescribing has been reported. We describe antiviral prescribing practices among primary care providers from a large surveillance network in the United States. Methods: From 2009-2016, a network of 36 to 68 outpatient clinics per year collected respiratory specimens and clinical data for patients with influenza-like illness (ILI). Specimens were tested for influenza using polymerase chain reaction (PCR). We used multivariable logistic regression to assess factors influencing antiviral prescribing. Results: Among 13 540 patients with ILI, 2766 (20%) were prescribed antivirals. In age groups recommended to receive empiric antiviral treatment for suspected influenza, 11% of children <2 years and 23% of adults >/=65 years received a prescription. Among 3681 patients with a positive PCR test for influenza, 40% tested negative by RIDT. In multivariable analysis, prescription receipt was strongly associated with a positive RIDT (adjusted odds ratio [aOR] 12, 95% CI 11-14) and symptom onset </=2 days before visit (aOR 4.3, 95% CI 3.8-4.9). Antiviral prescribing was also more frequent among pediatric and private family practice clinics compared with community health centers (aOR 1.9, 95% CI 1.6-2.2, and 1.3, 95% CI 1.1-1.5, respectively). Conclusion: Primary care providers were more likely to prescribe antivirals to patients with a positive RIDT, but antivirals were prescribed infrequently even to patients in high-risk age groups. Understanding patient and provider characteristics associated with antiviral prescribing is important for communicating treatment recommendations. |
Live attenuated and inactivated influenza vaccine effectiveness
Chung JR , Flannery B , Ambrose CS , Begue RE , Caspard H , DeMarcus L , Fowlkes AL , Kersellius G , Steffens A , Fry AM . Pediatrics 2019 143 (2) BACKGROUND: Researchers in observational studies of vaccine effectiveness (VE) in which they compared quadrivalent live attenuated vaccine (LAIV4) and inactivated influenza vaccine (IIV) among children and adolescents have shown inconsistent results, and the studies have been limited by small samples. METHODS: We combined data from 5 US studies from 2013-2014 through 2015-2016 to compare the VE of LAIV4 and IIV against medically attended, laboratory-confirmed influenza among patients aged 2 to 17 years by influenza season, subtype, age group, and prior vaccination status. The VE of IIV or LAIV4 was calculated as 100% x (1 - odds ratio), comparing the odds of vaccination among patients who were influenza-positive to patients who were influenza-negative from adjusted logistic regression models. Relative effectiveness was defined as the odds of influenza comparingLAIV4 and IIV recipients. RESULTS: Of 17 173 patients aged 2 to 17 years, 4579 received IIV, 1979 received LAIV4, and 10 615 were unvaccinated. Against influenza A/H1N1pdm09, VE was 67% (95% confidence interval [CI]: 62% to 72%) for IIV and 20% (95% CI: -6% to 39%) for LAIV4. Results were similar when stratified by vaccination in the previous season. LAIV4 recipients had significantly higher odds of influenza A/H1N1pdm09 compared with IIV recipients (odds ratio 2.66; 95% CI: 2.06 to 3.44). LAIV4 and IIV had similar effectiveness against influenza A/H3N2 and B. Our overall findings were consistent when stratified by influenza season and age group. CONCLUSIONS: From this pooled individual patient-level data analysis, we found reduced effectiveness of LAIV4 against influenza A/H1N1pdm09 compared with IIV, which is consistent with published results from the individual studies included. |
Detection of Influenza C Viruses Among Outpatients and Patients Hospitalized for Severe Acute Respiratory Infection, Minnesota, 2013-2016.
Thielen BK , Friedlander H , Bistodeau S , Shu B , Lynch B , Martin K , Bye E , Como-Sabetti K , Boxrud D , Strain AK , Chaves SS , Steffens A , Fowlkes AL , Lindstrom S , Lynfield R . Clin Infect Dis 2018 66 (7) 1092-1098 Background: Existing literature suggests that influenza C typically causes mild respiratory tract disease. However, clinical and epidemiological data are limited. Methods: Four outpatient clinics and 3 hospitals submitted clinical data and respiratory specimens through a surveillance network for acute respiratory infection (ARI) from May 2013 through December 2016. Specimens were tested using multitarget nucleic acid amplification for 19-22 respiratory pathogens, including influenza C. Results: Influenza C virus was detected among 59 of 10 202 (0.58%) hospitalized severe ARI cases and 11 of 2282 (0.48%) outpatients. Most detections occurred from December to March, 73% during the 2014-2015 season. Influenza C detections occurred among patients of all ages, with rates being similar between inpatients and outpatients. The highest rate of detection occurred among children aged 6-24 months (1.2%). Among hospitalized cases, 7 required intensive care. Medical comorbidities were reported in 58% of hospitalized cases and all who required intensive care. At least 1 other respiratory pathogen was detected in 40 (66%) cases, most commonly rhinovirus/enterovirus (25%) and respiratory syncytial virus (20%). The hemagglutinin-esterase-fusion gene was sequenced in 37 specimens, and both C/Kanagawa and C/Sao Paulo lineages were detected in inpatients and outpatients. Conclusions: We found seasonal circulation of influenza C with year-to-year variability. Detection was most frequent among young children but occurred in all ages. Some cases that were positive for influenza C, particularly those with comorbid conditions, had severe disease, suggesting a need for further study of the role of influenza C virus in the pathogenesis of respiratory disease. |
Comparison of outpatient medically attended and community level influenza-like illness - New York City, 2013-2015
Russell KE , Fowlkes A , Stockwell MS , Vargas CY , Saiman L , Larson EL , LaRussa P , Di Lonardo S , Popowich M , St George K , Steffens A , Reed C . Influenza Other Respir Viruses 2018 12 (3) 336-343 BACKGROUND: Surveillance of influenza-like illness (ILI) in the United States is primarily conducted through medical settings despite a significant burden of non-medically attended ILI. OBJECTIVES: To assess consistency between surveillance for respiratory viruses in outpatient and community settings using ILI surveillance from the Centers for Disease Control and Prevention Influenza Incidence Surveillance Project (IISP) and the Mobile Surveillance for Acute Respiratory Infections (ARI) and Influenza-Like Illness in the Community (MoSAIC) Study. METHODS: IISP conducts ILI surveillance in 3 primary care clinics in New York City, and MoSAIC conducts community-based ILI/ARI surveillance through text messaging among a cohort of New York City residents. Both systems obtain respiratory specimens from participants with ILI/ARI and test for multiple pathogens. We conducted a retrospective review of ILI cases in IISP and MoSAIC from January 2013 - May 2015 with descriptive analyses of clinical and laboratory data. RESULTS: Five-hundred twelve MoSAIC and 669 IISP participants met an ILI criteria (fever with cough or sore throat) and were included. Forty percent of MoSAIC participants sought care; the majority primary care. Pathogens were detected in 63% of MoSAIC and 70% of IISP cases. The relative distribution of influenza and other respiratory viruses detected were similar; however, there were statistically significant differences in the frequency that were not explained by care-seeking. CONCLUSIONS: Outpatient and community-based surveillance in the one found similar timing and relative distribution of respiratory viruses, but community surveillance in a single neighborhood may not fully capture the variations in ILI etiology that occur more broadly. This article is protected by copyright. All rights reserved. |
Assessment of virus interference in a test-negative study of influenza vaccine effectiveness
Feng S , Fowlkes AL , Steffens A , Finelli L , Cowling BJ . Epidemiology 2017 28 (4) 514-524 BACKGROUND: The observational test-negative study design is used to estimate vaccine effectiveness against influenza virus infection. An important assumption of the test-negative design is that vaccination does not affect the risk of infection with another virus. If such virus interference occurred, detection of other respiratory viruses would be more common among influenza vaccine recipients and vaccine effectiveness estimates could differ. We evaluated the potential for virus interference using data from the Influenza Incidence Surveillance Project. METHODS: From 2010 to 2013, outpatients presenting to clinics in 13 US jurisdictions with acute respiratory infections were tested for influenza and other respiratory viruses. We investigated whether virus interference might affect vaccine effectiveness estimates by first evaluating the sensitivity of estimates using alternative control groups that include or exclude patients with other respiratory virus detections by age group and early/middle/late stage of influenza seasons. Second, we evaluated the association between influenza vaccination receipt and other respiratory virus detection among influenza test negative patients. RESULTS: Influenza was detected in 3,743/10,650 patients (35%), and overall vaccine effectiveness was 47% (95% CI: 42%, 52%). Estimates using each control group were consistent overall or when stratified by age groups, and there were no differences among early, middle, or late phase during influenza season. We found no associations between detection of other respiratory viruses and receipt of influenza vaccination. CONCLUSIONS: In this 3-year test-negative design study in an outpatient setting in the United States, we found no evidence of virus interference or impact on influenza vaccine effectiveness estimation. |
Population-based surveillance for medically-attended human parainfluenza viruses from the Influenza Incidence Surveillance Project, 2010-2014
Steffens A , Finelli L , Whitaker B , Fowlkes A . Pediatr Infect Dis J 2016 35 (7) 717-22 BACKGROUND: Parainfluenza viruses (PIV) have been shown to contribute substantially to pediatric hospitalizations in the United States. However, to date, there has been no systematic surveillance to estimate the burden among pediatric outpatients. METHODS: From August 2010 through July 2014, outpatient health care providers with enumerated patient populations in 13 states and jurisdictions participating in the Influenza Incidence Surveillance Project conducted surveillance of patients with influenza-like illness (ILI). Respiratory specimens were collected from the first 10 ILI patients each week with demographic and clinical data. Specimens were tested for multiple respiratory viruses, including PIV1-4, using RT-PCR assays. Cumulative incidence was calculated using provider patient population size as the denominator. RESULTS: Parainfluenza viruses 1-3 were detected in 8.0% of 7716 ILI-related outpatient specimens: 30% were PIV1, 26% PIV2, and 44% PIV3. PIV circulation varied noticeably by year and type with PIV3 predominating in 2010-11 (incidence 110 per 100,000 children), PIV1 in 2011-12 (89 per 100,000), dual predominance of PIV2 and PIV3 (88 and 131 per 100,000) in 2012-13, and PIV3 (100 per 100,000) in 2013-14. The highest incidence of PIV detections was among patients aged <5 years (259 to 1307 per 100,000). The median age at detection for PIV3 (3.4 years) was significantly lower than the median ages for PIV1 (4.5 years) and PIV2 (7.0 years) (p<0.05). CONCLUSIONS: Parainfluenza viruses 1-3 comprise a substantial amount of medically-attended pediatric ILI, particularly among children aged <5 years. Distinct seasonal circulation patterns as well as significant differences in rates by age were observed between PIV types. |
Update: Influenza activity - United States
Smith S , Blanton L , Kniss K , Mustaquim D , Steffens C , Reed C , Bramley A , Flannery B , Fry AM , Grohskopf LA , Bresee J , Wallis T , Garten R , Xu X , Elal AI , Gubareva L , Barnes J , Wentworth DE , Burns E , Katz J , Jernigan D , Brammer L . MMWR Morb Mortal Wkly Rep 2015 64 (48) 1342-8 CDC collects, compiles, and analyzes data on influenza activity year-round in the United States. The influenza season generally begins in the fall and continues through the winter and spring months; however, the timing and severity of circulating influenza viruses can vary by geographic location and season. Influenza activity in the United States remained low through October and November in 2015. Influenza A viruses have been most frequently identified, with influenza A (H3) viruses predominating. This report summarizes U.S. influenza activity for the period October 4-November 28, 2015. |
Assessment of influenza vaccine effectiveness in a sentinel surveillance network 2010-13, United States
Cowling BJ , Feng S , Finelli L , Steffens A , Fowlkes A . Vaccine 2015 34 (1) 61-6 BACKGROUND: Influenza vaccines are now widely used to reduce the burden of annual epidemics of influenza virus infections. Influenza vaccine effectiveness (VE) is monitored annually to determine VE against each season's circulating influenza strains in different groups such as children, adults and the elderly. Few prospective surveillance programs are available to evaluate influenza VE against medically attended illness for patients of all ages in the United States. METHODS: We conducted surveillance of patients with acute respiratory illnesses in 101 clinics across the US during three consecutive influenza seasons. We analyzed laboratory testing results for influenza virus, self-reported vaccine history, and patient characteristics, defining cases as patients who tested positive for influenza virus and controls as patients who tested negative for influenza virus. Comparison of influenza vaccination coverage among cases versus controls, adjusted for potential confounders, was used to estimate VE as one minus the adjusted odds ratio multiplied by 100%. RESULTS: We included 10,650 patients during three influenza seasons from August 2010 through December 2013, and estimated influenza VE in children 6m-5y of age (58%; 95% CI: 49%-66%), children 6-17y (45%; 95% CI: 34%-53%), adults 18-49y (36%; 95% CI: 24%, 46%), and adults ≥50y (34%, 95% CI: 13%, 51%). VE was higher against influenza A(H1N1) compared to A(H3N2) and B. CONCLUSIONS: Our estimates of moderate influenza VE confirm the important role of vaccination in protecting against medically attended influenza virus infection. |
Update: influenza activity - United States and worldwide, May 24-September 5, 2015
Blanton L , Kniss K , Smith S , Mustaquim D , Steffens C , Flannery B , Fry AM , Bresee J , Wallis T , Garten R , Xu X , Elal AI , Gubareva L , Wentworth DE , Burns E , Katz J , Jernigan D , Brammer L . MMWR Morb Mortal Wkly Rep 2015 64 (36) 1011-6 During May 24-September 5, 2015, the United States experienced typical low levels of seasonal influenza activity. Influenza A (H1N1)pdm09 (pH1N1), influenza A (H3N2), and influenza B viruses were detected worldwide and were identified sporadically in the United States. All of the influenza viruses collected from U.S. states and other countries during that time have been characterized antigenically and/or genetically as being similar to the influenza vaccine viruses recommended for inclusion in the 2015-16 Northern Hemisphere vaccine. During May 24-September 5, 2015, three influenza variantdagger virus infections were reported; one influenza A (H3N2) variant virus (H3N2v) from Minnesota in July, one influenza A (H1N1) variant (H1N1v) from Iowa in August, and one H3N2v from Michigan in August. |
Incidence of medically attended influenza during pandemic and post-pandemic seasons through the Influenza Incidence Surveillance Project, 2009-13
Fowlkes A , Steffens A , Temte J , Lonardo SD , McHugh L , Martin K , Rubino H , Feist M , Davis C , Selzer C , Lojo J , Oni O , Kurkjian K , Thomas A , Boulton R , Bryan N , Lynfield R , Biggerstaff M , Finelli L . Lancet Respir Med 2015 3 (9) 709-718 BACKGROUND: Since the introduction of pandemic influenza A (H1N1) to the USA in 2009, the Influenza Incidence Surveillance Project has monitored the burden of influenza in the outpatient setting through population-based surveillance. METHODS: From Oct 1, 2009, to July 31, 2013, outpatient clinics representing 13 health jurisdictions in the USA reported counts of influenza-like illness (fever including cough or sore throat) and all patient visits by age. During four years, staff at 104 unique clinics (range 35-64 per year) with a combined median population of 368 559 (IQR 352 595-428 286) attended 35 663 patients with influenza-like illness and collected 13 925 respiratory specimens. Clinical data and a respiratory specimen for influenza testing by RT-PCR were collected from the first ten patients presenting with influenza-like illness each week. We calculated the incidence of visits for influenza-like illness using the size of the patient population, and the incidence attributable to influenza was extrapolated from the proportion of patients with positive tests each week. FINDINGS: The site-median peak percentage of specimens positive for influenza ranged from 58.3% to 77.8%. Children aged 2 to 17 years had the highest incidence of influenza-associated visits (range 4.2-28.0 per 1000 people by year), and adults older than 65 years had the lowest (range 0.5-3.5 per 1000 population). Influenza A H3N2, pandemic H1N1, and influenza B equally co-circulated in the first post-pandemic season, whereas H3N2 predominated for the next two seasons. Of patients for whom data was available, influenza vaccination was reported in 3289 (28.7%) of 11 459 patients with influenza-like illness, and antivirals were prescribed to 1644 (13.8%) of 11 953 patients. INTERPRETATION: Influenza incidence varied with age groups and by season after the pandemic of 2009 influenza A H1N1. High levels of influenza virus circulation, especially in young children, emphasise the need for additional efforts to increase the uptake of influenza vaccines and antivirals. FUNDING: US Centers for Disease Control and Prevention. |
Influenza activity - United States, 2014-15 season and composition of the 2015-16 influenza vaccine
Appiah GD , Blanton L , D'Mello T , Kniss K , Smith S , Mustaquim D , Steffens C , Dhara R , Cohen J , Chaves SS , Bresee J , Wallis T , Xu X , Abd Elal AI , Gubareva L , Wentworth DE , Katz J , Jernigan D , Brammer L . MMWR Morb Mortal Wkly Rep 2015 64 (21) 583-590 During the 2014-15 influenza season in the United States, influenza activity increased through late November and December before peaking in late December. Influenza A (H3N2) viruses predominated, and the prevalence of influenza B viruses increased late in the season. This influenza season, similar to previous influenza A (H3N2)-predominant seasons, was moderately severe with overall high levels of outpatient illness and influenza-associated hospitalization, especially for adults aged ≥65 years. The majority of circulating influenza A (H3N2) viruses were different from the influenza A (H3N2) component of the 2014-15 Northern Hemisphere seasonal vaccines, and the predominance of these drifted viruses resulted in reduced vaccine effectiveness. This report summarizes influenza activity in the United States during the 2014-15 influenza season (September 28, 2014-May 23, 2015) and reports the recommendations for the components of the 2015-16 Northern Hemisphere influenza vaccine. |
Update: influenza activity - United States, September 28, 2014-February 21, 2015
D'Mello T , Brammer L , Blanton L , Kniss K , Smith S , Mustaquim D , Steffens C , Dhara R , Cohen J , Chaves SS , Finelli L , Bresee J , Wallis T , Xu X , Abd Elal AI , Gubareva L , Wentworth D , Villanueva J , Katz J , Jernigan D . MMWR Morb Mortal Wkly Rep 2015 64 (8) 206-12 Influenza activity in the United States began to increase in mid-November, remained elevated through February 21, 2015, and is expected to continue for several more weeks. To date, influenza A (H3N2) viruses have predominated overall. As has been observed in previous seasons during which influenza A (H3N2) viruses predominated, adults aged ≥65 years have been most severely affected. The cumulative laboratory-confirmed influenza-associated hospitalization rate among adults aged ≥65 years is the highest recorded since this type of surveillance began in 2005. This age group also accounts for the majority of deaths attributed to pneumonia and influenza. The majority of circulating influenza A (H3N2) viruses are different from the influenza A (H3N2) component of the 2014-15 Northern Hemisphere seasonal vaccines, and the predominance of these antigenically and genetically drifted viruses has resulted in reduced vaccine effectiveness. This report summarizes U.S. influenza activity* since September 28, 2014, and updates the previous summary. |
Update: influenza activity - United States, September 28-December 6, 2014
Rolfes M , Blanton L , Brammer L , Smith S , Mustaquim D , Steffens C , Cohen J , Leon M , Chaves SS , Abd Elal AI , Gubareva L , Hall H , Wallis T , Villanueva J , Bresee J , Cox N , Finelli L . MMWR Morb Mortal Wkly Rep 2014 63 (50) 1189-94 CDC collects, compiles, and analyzes data on influenza activity year-round in the United States (http://www.cdc.gov/flu/weekly/fluactivitysurv.htm). The influenza season generally begins in the fall and continues through the winter and spring months; however, the timing and severity of circulating influenza viruses can vary by geographic location and season. Influenza activity in the United States increased starting mid-October through December. This report summarizes U.S. influenza activity during September 28-December 6, 2014. |
Update: influenza activity - United States and worldwide, May 18-September 20, 2014
Blanton L , Brammer L , Smith S , Mustaquim D , Steffens C , Abd Elal AI , Gubareva L , Hall H , Wallis T , Villanueva J , Xu X , Bresee J , Cox N , Finelli L . MMWR Morb Mortal Wkly Rep 2014 63 (39) 861-864 During May 18-September 20, 2014, the United States experienced low levels of seasonal influenza activity overall. Influenza A (H1N1)pdm09 (pH1N1), influenza A (H3N2), and influenza B viruses were detected worldwide and were identified sporadically in the United States. In August, two influenza A (H3N2) variant viruses (H3N2v) were detected in Ohio. This report summarizes influenza activity in the United States and worldwide during May 18-September 20, 2014. |
Influenza activity - United States, 2013-14 season and composition of the 2014-15 influenza vaccines
Epperson S , Blanton L , Kniss K , Mustaquim D , Steffens C , Wallis T , Dhara R , Leon M , Perez A , Chaves SS , Elal AA , Gubareva L , Xu X , Villanueva J , Bresee J , Cox N , Finelli L , Brammer L . MMWR Morb Mortal Wkly Rep 2014 63 (22) 483-90 During the 2013-14 influenza season in the United States, influenza activity increased through November and December before peaking in late December. Influenza A (H1N1)pdm09 (pH1N1) viruses predominated overall, but influenza B viruses and, to a lesser extent, influenza A (H3N2) viruses also were reported in the United States. This influenza season was the first since the 2009 pH1N1 pandemic in which pH1N1 viruses predominated and was characterized overall by lower levels of outpatient illness and mortality than influenza A (H3N2)-predominant seasons, but higher rates of hospitalization among adults aged 50-64 years compared with recent years. This report summarizes influenza activity in the United States for the 2013-14 influenza season (September 29, 2013-May 17, 2014dagger) and reports recommendations for the components of the 2014-15 Northern Hemisphere influenza vaccines. |
Update: influenza activity - United States, September 29, 2013-February 8, 2014
Arriola CS , Brammer L , Epperson S , Blanton L , Kniss K , Mustaquim D , Steffens C , Dhara R , Leon M , Perez A , Chaves SS , Katz J , Wallis T , Villanueva J , Xu X , Abd Elal AI , Gubareva L , Cox N , Finelli L , Bresee J , Jhung M . MMWR Morb Mortal Wkly Rep 2014 63 (7) 148-54 Influenza activity in the United States began to increase in mid-November and remained elevated through February 8, 2014. During that time, influenza A (H1N1)pdm09 (pH1N1) viruses predominated overall, while few B and A (H3N2) viruses were detected. This report summarizes U.S. influenza activity* during September 29, 2013-February 8, 2014, and updates the previous summary. |
Outbreak of variant influenza A(H3N2) virus in the United States
Jhung MA , Epperson S , Biggerstaff M , Allen D , Balish A , Barnes N , Beaudoin A , Berman L , Bidol S , Blanton L , Blythe D , Brammer L , D'Mello T , Danila R , Davis W , de Fijter S , Diorio M , Durand LO , Emery S , Fowler B , Garten R , Grant Y , Greenbaum A , Gubareva L , Havers F , Haupt T , House J , Ibrahim S , Jiang V , Jain S , Jernigan D , Kazmierczak J , Klimov A , Lindstrom S , Longenberger A , Lucas P , Lynfield R , McMorrow M , Moll M , Morin C , Ostroff S , Page SL , Park SY , Peters S , Quinn C , Reed C , Richards S , Scheftel J , Simwale O , Shu B , Soyemi K , Stauffer J , Steffens C , Su S , Torso L , Uyeki TM , Vetter S , Villanueva J , Wong KK , Shaw M , Bresee JS , Cox N , Finelli L . Clin Infect Dis 2013 57 (12) 1703-12 BACKGROUND: Variant influenza virus infections are rare but may have pandemic potential if person-to-person transmission is efficient. We describe the epidemiology of a multistate outbreak of an influenza A(H3N2) variant virus (H3N2v) first identified in 2011. METHODS: We identified laboratory-confirmed cases of H3N2v and used a standard case report form to characterize illness and exposures. We considered illness to result from person-to-person H3N2v transmission if swine contact was not identified within 4 days prior to illness onset. RESULTS: From 9 July to 7 September 2012, we identified 306 cases of H3N2v in 10 states. The median age of all patients was 7 years. Commonly reported signs and symptoms included fever (98%), cough (85%), and fatigue (83%). Sixteen patients (5.2%) were hospitalized, and 1 fatal case was identified. The majority of those infected reported agricultural fair attendance (93%) and/or contact with swine (95%) prior to illness. We identified 15 cases of possible person-to-person transmission of H3N2v. Viruses recovered from patients were 93%-100% identical and similar to viruses recovered from previous cases of H3N2v. All H3N2v viruses examined were susceptible to oseltamivir and zanamivir and resistant to adamantane antiviral medications. CONCLUSIONS: In a large outbreak of variant influenza, the majority of infected persons reported exposures, suggesting that swine contact at an agricultural fair was a risk for H3N2v infection. We identified limited person-to-person H3N2v virus transmission, but found no evidence of efficient or sustained person-to-person transmission. Fair managers and attendees should be aware of the risk of swine-to-human transmission of influenza viruses in these settings. |
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