Last data update: Jul 01, 2024. (Total: 47134 publications since 2009)
Records 1-2 (of 2 Records) |
Query Trace: Quinlivan ML [original query] |
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Revisiting the genotyping scheme for varicella-zoster viruses based on whole-genome comparisons.
Jensen NJ , Rivailler P , Tseng HF , Quinlivan ML , Radford K , Folster J , Harpaz R , LaRussa P , Jacobsen S , Schmid DS . J Gen Virol 2017 98 (6) 1434-1438 ![]() We report whole-genome sequences (WGSs) for four varicella-zoster virus (VZV) samples from a shingles study conducted by Kaiser Permanente of Southern California. Comparative genomics and phylogenetic analysis of all published VZV WGSs revealed that strain KY037798 is in clade IX, which shall henceforth be designated clade 9. Previously published single nucleotide polymorphisms (SNP)-based genotyping schemes fail to discriminate between clades 6 and VIII and employ positions that are not clade-specific. We provide an updated list of clade-specific positions that supersedes the list determined at the 2008 VZV nomenclature meeting. Finally, we propose a new targeted genotyping scheme that will discriminate the circulating VZV clades with at least a twofold redundancy. Genotyping strategies using a limited set of targeted SNPs will continue to provide an efficient 'first pass' method for VZV strain surveillance as vaccination programmes for varicella and zoster influence the dynamics of VZV transmission. |
Novel genetic variation identified at fixed loci in ORF62 of the Oka varicella vaccine and in a case of vaccine-associated herpes zoster.
Quinlivan ML , Jensen NJ , Radford KW , Schmid DS . J Clin Microbiol 2012 50 (5) 1533-8 ![]() The live attenuated Oka varicella vaccine (vOka), derived from clade 2 wild type (wt) virus, pOka, is used for routine childhood immunization in several countries including the United States (US), causing dramatic declines in varicella incidence. vOka can cause varicella, establish latency and reactivate to cause herpes zoster (HZ). Three loci in varicella-zoster virus (VZV) open reading frame (ORF) 62 (106262, 107252, 108111) are used to distinguish vOka from wt VZV. A 4(th) position (105705) is also fixed for the vOka allele in nearly all vaccine batches. These 4 positions and two vOka mutations (106710 & 107599) reportedly absent from Varivax were analyzed on Varivax-derived ORF62 TOPO TA clones. The wt allele was detected at positions 105705 and 107252 on 3% and 2% of clones, respectively, but was absent at positions 106262 and 108111. Position 106710 was fixed for the wt allele whereas the vOka allele was present on 18.4% of clones at position 107599. We also evaluated the 4 vOka markers in an isolate obtained from a case of vaccine HZ. The isolate carried the vOka allele at positions 105705, 106262 and 108111. However, at position 107252 the wt allele was present. Thus, all of the ORF62 vOka markers previously regarded as fixed occur as the wt allele in a small percentage of vOka strains. Characterization of all four vOka markers in ORF62 and the Clade 2 subtype marker in ORF38 is now necessary to confirm vOka adverse events. |
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