Last data update: Jun 03, 2024. (Total: 46935 publications since 2009)
Records 1-6 (of 6 Records) |
Query Trace: Olsen-Rasmussen M [original query] |
---|
Serro 2 Virus Highlights the Fundamental Genomic and Biological Features of a Natural Vaccinia Virus Infecting Humans.
Trindade GS , Emerson GL , Sammons S , Frace M , Govil D , Fernandes Mota BE , Abrahao JS , de Assis FL , Olsen-Rasmussen M , Goldsmith CS , Li Y , Carroll D , Guimaraes da Fonseca F , Kroon E , Damon IK . Viruses 2016 8 (12) Vaccinia virus (VACV) has been implicated in infections of dairy cattle and humans, and outbreaks have substantially impacted local economies and public health in Brazil. During a 2005 outbreak, a VACV strain designated Serro 2 virus (S2V) was collected from a 30-year old male milker. Our aim was to phenotypically and genetically characterize this VACV Brazilian isolate. S2V produced small round plaques without associated comets when grown in BSC40 cells. Furthermore, S2V was less virulent than the prototype strain VACV-Western Reserve (WR) in a murine model of intradermal infection, producing a tiny lesion with virtually no surrounding inflammation. The genome of S2V was sequenced by primer walking. The coding region spans 184,572 bp and contains 211 predicted genes. Mutations in envelope genes specifically associated with small plaque phenotypes were not found in S2V; however, other alterations in amino acid sequences within these genes were identified. In addition, some immunomodulatory genes were truncated in S2V. Phylogenetic analysis using immune regulatory-related genes, besides the hemagglutinin gene, segregated the Brazilian viruses into two clusters, grouping the S2V into Brazilian VACV group 1. S2V is the first naturally-circulating human-associated VACV, with a low passage history, to be extensively genetically and phenotypically characterized. |
Comparative genomics of Vibrio cholerae from Haiti, Asia, and Africa.
Reimer AR , Van Domselaar G , Stroika S , Walker M , Kent H , Tarr C , Talkington D , Rowe L , Olsen-Rasmussen M , Frace M , Sammons S , Dahourou GA , Boncy J , Smith AM , Mabon P , Petkau A , Graham M , Gilmour MW , Gerner-Smidt P . Emerg Infect Dis 2011 17 (11) 2113-2121 Cholera was absent from the island of Hispaniola at least a century before an outbreak that began in Haiti in the fall of 2010. Pulsed-field gel electrophoresis (PFGE) analysis of clinical isolates from the Haiti outbreak and recent global travelers returning to the United States showed indistinguishable PFGE fingerprints. To better explore the genetic ancestry of the Haiti outbreak strain, we acquired 23 whole-genome Vibrio cholerae sequences: 9 isolates obtained in Haiti or the Dominican Republic, 12 PFGE pattern-matched isolates linked to Asia or Africa, and 2 nonmatched outliers from the Western Hemisphere. Phylogenies for whole-genome sequences and core genome single-nucleotide polymorphisms showed that the Haiti outbreak strain is genetically related to strains originating in India and Cameroon. However, because no identical genetic match was found among sequenced contemporary isolates, a definitive genetic origin for the outbreak in Haiti remains speculative. |
Chasing Jenner's vaccine: revisiting cowpox virus classification
Carroll DS , Emerson GL , Li Y , Sammons S , Olson V , Frace M , Nakazawa Y , Czerny CP , Tryland M , Kolodziejek J , Nowotny N , Olsen-Rasmussen M , Khristova M , Govil D , Karem K , Damon IK , Meyer H . PLoS One 2011 6 (8) e23086 Cowpox virus (CPXV) is described as the source of the first vaccine used to prevent the onset and spread of an infectious disease. It is one of the earliest described members of the genus Orthopoxvirus, which includes the viruses that cause smallpox and monkeypox in humans. Both the historic and current literature describe "cowpox" as a disease with a single etiologic agent. Genotypic data presented herein indicate that CPXV is not a single species, but a composite of several (up to 5) species that can infect cows, humans, and other animals. The practice of naming agents after the host in which the resultant disease manifests obfuscates the true taxonomic relationships of "cowpox" isolates. These data support the elevation of as many as four new species within the traditional "cowpox" group and suggest that both wild and modern vaccine strains of Vaccinia virus are most closely related to CPXV of continental Europe rather than the United Kingdom, the homeland of the vaccine. |
Dissemination of an enterococcus Inc18-like vanA plasmid, associated with vancomycin-resistant Staphylococcus aureus
Zhu W , Murray PR , Huskins WC , Jernigan JA , McDonald LC , Clark NC , Anderson KF , McDougal LK , Hageman JC , Olsen-Rasmussen M , Frace M , Alangaden GJ , Chenoweth C , Zervos MJ , Robinson-Dunn B , Schreckenberger PC , Reller LB , Rudrik JT , Patel JB . Antimicrob Agents Chemother 2010 54 (10) 4314-20 Of the 9 vancomycin-resistant Staphylococcus aureus (VRSA) cases reported to date in the literature, 7 occurred in Michigan (MI). In 5 out of 7 of the Michigan VRSA cases, an Inc18-like vanA plasmid was identified in the VRSA isolate and/or an associated vancomycin-resistant Enterococcus (VRE) isolate from the same patient. This plasmid may play a critical role in the emergence of VRSA and analysis of the geographical distribution of VRE containing this plasmid may explain the observed prevalence of VRSA in MI. A total of 1,641 VRE from three separate collections were tested for the Inc18-like vanA plasmid by PCR for traA, repR, and vanA. All VRE from 2 MI institutions (N= 386), and between 60 to 70 VRE (N=883) from 17 institutions in 13 other states were tested. Fifteen isolates (3.9%) from MI were positive for an Inc18-like vanA plasmid (9 E. faecalis [12.5%], 3 E. faecium [1.0%], 2 E. avium, and 1 E. raffinosus). Six isolates (0.6%) from outside of MI were positive (3 E. faecalis [2.7%] and 3 E. faecium [0.4%]). Fourteen of the 15 plasmid-positive isolates from MI had the same Tn1546 insertion site location as those of the VRSA-associated Inc18 plasmid whereas 5 out of 6 plasmid-positive isolates from outside of MI differed in this characteristic. The one exception was an E. faecium isolate with a pulsed-field gel electrophoresis (PFGE) pattern that was indistinguishable from a plasmid-positive isolate from MI. Most plasmid-positive E. faecalis demonstrated diverse patterns by PFGE, with the exception of three pairs with indistinguishable patterns, suggesting the plasmid is mobile. Although VRE with the VRSA-associated Inc18-like vanA plasmid were more common in MI, they remain rare. Periodic surveillance of VRE for the plasmid may be useful in predicting occurrence of VRSA. |
Virulence factors encoded by Legionella longbeachae identified on the basis of the genome sequence analysis of clinical isolate D-4968
Kozak NA , Buss M , Lucas CE , Frace M , Govil D , Travis T , Olsen-Rasmussen M , Benson RF , Fields BS . J Bacteriol 2009 192 (4) 1030-44 Legionella longbeachae causes most cases of legionellosis in Australia and may be under-reported worldwide due to the lack of L. longbeachae-specific diagnostic tests. L. longbeachae displays distinctive differences in intracellular trafficking, caspase-1 activation, and infection of mouse models compared to L. pneumophila, yet both species have an indistinguishable clinical presentation in humans. Unlike other legionellae, which inhabit fresh water systems, L. longbeachae is found predominantly in moist soil. In this study, we sequenced and annotated the genome of a L. longbeachae clinical isolate, D-4968, from Oregon, US, and compared it to the published genomes of L. pneumophila. The study revealed that the D-4968 genome is larger with a gene order that is different from L. pneumophila. Genes encoding structural components of type II, type IV Lvh, and type IV Icm/Dot secretion systems are conserved. In contrast, only 42/140 homologs of L. pneumophila Icm/Dot substrates have been found in the D-4968 genome. L. longbeachae encodes numerous proteins with eukaryotic motifs and eukaryotic-like proteins unique to this species, including 16 ankyrin repeat-containing proteins and a novel U-box protein. We predict that these proteins are secreted by the L. longbeachae Icm/Dot secretion system. In contrast to L. pneumophila, the L. longbeachae D-4968 genome does not carry flagellar biosynthesis genes, yet contains a chemotaxis operon. The lack of a flagellum explains the failure of L. longbeachae to activate caspase-1 and trigger pyroptosis in murine macrophages. These unique features of the L. longbeachae genome may reflect adaptation of this species to life in soil. |
The phylogenetics and ecology of the orthopoxviruses endemic to North America
Emerson GL , Li Y , Frace MA , Olsen-Rasmussen MA , Khristova ML , Govil D , Sammons SA , Regnery RL , Karem KL , Damon IK , Carroll DS . PLoS One 2009 4 (10) e7666 The data presented herein support the North American orthopoxviruses (NA OPXV) in a sister relationship to all other currently described Orthopoxvirus (OPXV) species. This phylogenetic analysis reaffirms the identification of the NA OPXV as close relatives of "Old World" (Eurasian and African) OPXV and presents high support for deeper nodes within the Chordopoxvirinae family. The natural reservoir host(s) for many of the described OPXV species remains unknown although a clear virus-host association exists between the genus OPXV and several mammalian taxa. The hypothesized host associations and the deep divergence of the OPXV/NA OPXV clades depicted in this study may reflect the divergence patterns of the mammalian faunas of the Old and New World and reflect a more ancient presence of OPXV on what are now the American continents. Genes from the central region of the poxvirus genome are generally more conserved than genes from either end of the linear genome due to functional constraints imposed on viral replication abilities. The relatively slower evolution of these genes may more accurately reflect the deeper history among the poxvirus group, allowing for robust placement of the NA OPXV within Chordopoxvirinae. Sequence data for nine genes were compiled from three NA OPXV strains plus an additional 50 genomes collected from Genbank. The current, gene sequence based phylogenetic analysis reaffirms the identification of the NA OPXV as the nearest relatives of "Old World" OPXV and presents high support for deeper nodes within the Chordopoxvirinae family. Additionally, the substantial genetic distances that separate the currently described NA OPXV species indicate that it is likely that many more undescribed OPXV/NA OPXV species may be circulating among wild animals in North America. |
- Page last reviewed:Feb 1, 2024
- Page last updated:Jun 03, 2024
- Content source:
- Powered by CDC PHGKB Infrastructure