Last data update: Jul 18, 2025. (Total: 49602 publications since 2009)
Records 1-6 (of 6 Records) |
Query Trace: Nandakumar S[original query] |
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Pediatric tuberculosis: A review of evidence-based best practices for clinicians and health care providers
Moore BK , Graham SM , Nandakumar S , Doyle J , Maloney SA . Pathogens 2024 13 (6) Advances in pediatric TB care are promising, the result of decades of advocacy, operational and clinical trials research, and political will by national and local TB programs in high-burden countries. However, implementation challenges remain in linking policy to practice and scaling up innovations for prevention, diagnosis, and treatment of TB in children, especially in resource-limited settings. There is both need and opportunity to strengthen clinician confidence in making a TB diagnosis and managing the various manifestations of TB in children, which can facilitate the translation of evidence to action and expand access to new tools and strategies to address TB in this population. This review aims to summarize existing guidance and best practices for clinicians and health care providers in low-resource, TB-endemic settings and identify resources with more detailed and actionable information for decision-making along the clinical cascade to prevent, find, and cure TB in children. |
Harmonizing lipidomics: NIST interlaboratory comparison exercise for lipidomics using Standard Reference Material 1950 metabolites in frozen human plasma
Bowden JA , Heckert A , Ulmer CZ , Jones CM , Koelmel JP , Abdullah L , Ahonen L , Alnouti Y , Armando A , Asara JM , Bamba T , Barr JR , Bergquist J , Borchers CH , Brandsma J , Breitkopf SB , Cajka T , Cazenave-Gassiot A , Checa A , Cinel MA , Colas RA , Cremers S , Dennis EA , Evans JE , Fauland A , Fiehn O , Gardner MS , Garrett TJ , Gotlinger KH , Han J , Huang Y , Neo AH , Hyotylainen T , Izumi Y , Jiang H , Jiang H , Jiang J , Kachman M , Kiyonami R , Klavins K , Klose C , Kofeler HC , Kolmert J , Koal T , Koster G , Kuklenyik Z , Kurland IJ , Leadley M , Lin K , Maddipati KR , McDougall D , Meikle PJ , Mellett NA , Monnin C , Moseley MA , Nandakumar R , Oresic M , Patterson RE , Peake D , Pierce JS , Post M , Postle AD , Pugh R , Qui Y , Quehenberger O , Ramrup P , Rees J , Rembiesa B , Reynaud D , Roth MR , Sales S , Schuhmann K , Schwartzman ML , Serhan CN , Shevchenko A , Somerville SE , St John-Williams L , Surma MA , Takeda H , Thakare R , Thompson JW , Torta F , Triebl A , Trötzmüller M , Ubhayasekera SJK , Vuckovic D , Weir JM , Welti R , Wenk MR , Wheelock CE , Yao L , Yuan M , Zhao XH , Zhou S . J Lipid Res 2017 58 (12) 2275-2288 As the lipidomics field continues to advance, self-evaluation within the community is critical. Here, we performed an interlaboratory comparison exercise for lipidomics using Standard Reference Material (SRM) 1950 Metabolites in Frozen Human Plasma, a commercially available reference material. The interlaboratory study comprised 31 diverse laboratories, with each lab using a different lipidomics workflow. A total of 1527 unique lipids were measured across all laboratories, and consensus location estimates and associated uncertainties were determined for 339 of these lipids measured at the sum composition level by five or more participating laboratories. These evaluated lipids detected in SRM 1950 serve as community-wide benchmarks for intra- and inter-laboratory quality control and method validation. These analyses were performed using non-standardized laboratory-independent workflows. The consensus locations were also compared to a previous examination of SRM 1950 by the LIPID MAPS consortium. While the central theme of the interlaboratory study was to provide values to help harmonize lipids, lipid mediators, and precursor measurements across the community, it was also initiated to stimulate a discussion regarding areas in need of improvement. |
Boosting BCG-primed responses with a subunit Apa vaccine during the waning phase improves immunity and imparts protection against Mycobacterium tuberculosis
Nandakumar S , Kannanganat S , Dobos KM , Lucas M , Spencer JS , Amara RR , Plikaytis BB , Posey JE , Sable SB . Sci Rep 2016 6 25837 Heterologous prime-boosting has emerged as a powerful vaccination approach against tuberculosis. However, optimal timing to boost BCG-immunity using subunit vaccines remains unclear in clinical trials. Here, we followed the adhesin Apa-specific T-cell responses in BCG-primed mice and investigated its BCG-booster potential. The Apa-specific T-cell response peaked 32-52 weeks after parenteral or mucosal BCG-priming but waned significantly by 78 weeks. A subunit-Apa-boost during the contraction-phase of BCG-response had a greater effect on the magnitude and functional quality of specific cellular and humoral responses compared to a boost at the peak of BCG-response. The cellular response increased following mucosal BCG-prime-Apa-subunit-boost strategy compared to Apa-subunit-prime-BCG-boost approach. However, parenteral BCG-prime-Apa-subunit-boost by a homologous route was the most effective strategy in-terms of enhancing specific T-cell responses during waning in the lung and spleen. Two Apa-boosters markedly improved waning BCG-immunity and significantly reduced Mycobacterium tuberculosis burdens post-challenge. Our results highlight the challenges of optimization of prime-boost regimens in mice where BCG drives persistent immune-activation and suggest that boosting with a heterologous vaccine may be ideal once the specific persisting effector responses are contracted. Our results have important implications for design of prime-boost regimens against tuberculosis in humans. |
Attrition of T-cell functions and simultaneous upregulation of inhibitory markers correspond with the waning of BCG-induced protection against tuberculosis in mice
Nandakumar S , Kannanganat S , Posey JE , Amara RR , Sable SB . PLoS One 2014 9 (11) e113951 Mycobacterium bovis bacille Calmette-Guerin (BCG) is the most widely used live attenuated vaccine. However, the correlates of protection and waning of its immunity against tuberculosis is poorly understood. In this study, we correlated the longitudinal changes in the magnitude and functional quality of CD4+ and CD8+ T-cell response over a period of two years after mucosal or parenteral BCG vaccination with the strength of protection against Mycobacterium tuberculosis in mice. The BCG vaccination-induced CD4+ and CD8+ T cells exhibited comparable response kinetics but distinct functional attributes in-terms of IFN-gamma, IL-2 and TNF-alpha co-production and CD62L memory marker expression. Despite a near life-long BCG persistence and the induction of enduring CD4+ T-cell responses characterized by IFN-gamma and/or TNF-alpha production with comparable protection, the protective efficacy waned regardless of the route of vaccination. The progressive decline in the multifactorial functional abilities of CD4+ and CD8+ T cells in-terms of type-1 cytokine production, proliferation and cytolytic potential corresponded with the waning of protection against M. tuberculosis infection. In addition, simultaneous increase in the dysfunctional and terminally-differentiated T cells expressing CTLA-4, KLRG-1 and IL-10 during the contraction phase of BCG-induced response coincided with the loss of protection. Our results question the empirical development of BCG-booster vaccines and emphasize the pursuit of strategies that maintain superior T-cell functional capacity. Furthermore, our results underscore the importance of understanding the comprehensive functional dynamics of antigen-specific T-cell responses in addition to cytokine polyfunctionality in BCG-vaccinated hosts while optimizing novel vaccination strategies against tuberculosis. |
Cellular immune responses to nine Mycobacterium tuberculosis vaccine candidates following intranasal vaccination
Sable SB , Cheruvu M , Nandakumar S , Sharma S , Bandyopadhyay K , Kellar KL , Posey JE , Plikaytis BB , Amara RR , Shinnick TM . PLoS One 2011 6 (7) e22718 BACKGROUND: The identification of Mycobacterium tuberculosis vaccines that elicit a protective immune response in the lungs is important for the development of an effective vaccine against tuberculosis. METHODS AND PRINCIPAL FINDINGS: In this study, a comparison of intranasal (i.n.) and subcutaneous (s.c.) vaccination with the BCG vaccine demonstrated that a single moderate dose delivered intranasally induced a stronger and sustained M. tuberculosis-specific T-cell response in lung parenchyma and cervical lymph nodes of BALB/c mice than vaccine delivered subcutaneously. Both BCG and a multicomponent subunit vaccine composed of nine M. tuberculosis recombinant proteins induced strong antigen-specific T-cell responses in various local and peripheral immune compartments. Among the nine recombinant proteins evaluated, the alanine proline rich antigen (Apa, Rv1860) was highly antigenic following i.n. BCG and immunogenic after vaccination with a combination of the nine recombinant antigens. The Apa-induced responses included induction of both type 1 and type 2 cytokines in the lungs as evaluated by ELISPOT and a multiplexed microsphere-based cytokine immunoassay. Of importance, i.n. subunit vaccination with Apa imparted significant protection in the lungs and spleen of mice against M. tuberculosis challenge. Despite observed differences in the frequencies and location of specific cytokine secreting T cells both BCG vaccination routes afforded comparable levels of protection in our study. CONCLUSION AND SIGNIFICANCE: Overall, our findings support consideration and further evaluation of an intranasally targeted Apa-based vaccine to prevent tuberculosis. |
Mycobacterium tuberculosis components stimulate production of the antimicrobial peptide hepcidin
Sow FB , Nandakumar S , Velu V , Kellar KL , Schlesinger LS , Amara RR , Lafuse WP , Shinnick TM , Sable SB . Tuberculosis (Edinb) 2011 91 (4) 314-21 ![]() We investigated the in vitro production of the antimicrobial peptide hepcidin by cells of the innate immune system that harbor Mycobacterium tuberculosis. Stimulation of mouse lung macrophages with M. tuberculosis or IFN-gamma + M. tuberculosis induced hepcidin mRNA. In human alveolar A549 epithelial cells, lipoglycans of M. tuberculosis, in particular mannose-capped lipoarabinomannan and phosphatidyl-myo-inositol mannosides, were strong inducers of hepcidin mRNA. In mouse dendritic cells, hepcidin mRNA was increased by subcellular fractions and culture filtrate proteins of M. tuberculosis and by TLR2 and TLR4 agonists, but not by TLR9 agonists, IL-1-alpha, IL-6 or TNF-alpha. Flow cytometry evaluation of human peripheral blood mononuclear cells demonstrated that CD11c(+) myeloid dendritic cells stimulated with killed M. tuberculosis or live M. bovis BCG produced hepcidin. The production of the antimicrobial peptide hepcidin by cells that interact with M. tuberculosis suggests a host defense mechanism against mycobacteria. |
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