Last data update: Aug 15, 2025. (Total: 49733 publications since 2009)
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| Query Trace: Ma K[original query] |
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| Human Metapneumovirus and Respiratory Syncytial Virus in Children: A Comparative Analysis
Goldstein LA , Michaels MG , Salthouse A , Toepfer AP , Musa S , Hickey RW , Johnson M , Wang-Erickson AF , Weinberg GA , Szilagyi PG , Schlaudecker EP , Staat MA , Sahni LC , Boom JA , Klein EJ , Englund JA , Schuster JE , Selvarangan R , Harrison CJ , Halasa NB , Stewart LS , Dawood FS , Moline HL , Williams JV . Pediatrics 2025
BACKGROUND: Human metapneumovirus (HMPV) and respiratory syncytial virus (RSV) are genetically related viruses and major causes of medically attended acute respiratory illness in children. Research comparing the severity of illnesses resulting from these infections lacks consensus. METHODS: Children younger than 18 years with acute respiratory illness were enrolled through active, prospective surveillance from 2016 to 2020 at 7 US pediatric hospitals and emergency departments (EDs). Clinical information was obtained from parent interviews and medical records. Midturbinate nasal swabs were collected and tested for RSV and HMPV using molecular diagnostic assays at each site. We compared descriptive and clinical features of children with RSV or HMPV and calculated adjusted odds ratios (aOR) for severe outcomes comparing RSV with HMPV. Risk factors for severe outcomes were assessed in children with RSV or HMPV using logistic regression models. RESULTS: A total of 5329 children hospitalized with RSV (n = 4398) or HMPV (n = 931) and 3276 children with RSV-associated (n = 2371) or HMPV-associated (n = 905) ED visits were enrolled. The median age of children hospitalized with RSV was lower than that of children with HMPV (7 months vs 16 months, P < .0001). Children presenting to the ED with RSV-associated acute respiratory illness had higher odds of being hospitalized than children with HMPV (aOR, 1.68; 95% CI, 1.50-1.87), with the highest odds in infants younger than 6 months (aOR, 3.27; 95% CI, 2.53-4.23). Underlying conditions were more than twice as common among infants hospitalized with HMPV (26%) than those with RSV (11%). CONCLUSIONS: Children with HMPV-associated hospitalization tend to be older and more likely to have underlying medical conditions compared with children with RSV-associated hospitalization. |
| Participant engagement in a national longitudinal study of COVID-19: Insights from the INSPIRE study
Ma KPK , Stober T , Gottlieb M , Geyer RE , Rising K , Saydah S , Santangelo M , Gatling K , Grau D , Wang RC , Montoy JC , Idris A , MacDonald S , Hill MJ , Huebinger R , Prado MG , Gentile NL , Spatz E , Maliki C , Dorney J , Elmore JG , L'Hommedieu M , Weinstein RA , Venkatesh AK , Stephens KA . PLoS One 2025 20 (7) e0325948 OBJECTIVE: To examine participants' motivations and their experiences throughout a decentralized, longitudinal COVID-19 study in the U.S. METHODS: We recruited 355 participants from the Innovative Support for Patients with SARS-CoV-2 Infections Registry (INSPIRE) between November 2022 - March 2023 to answer five qualitative survey questions anonymously. We used an inductive content analysis approach to analyze the data. RESULTS: We identified five key themes from the analysis, which reflected participants' a) motivations to join the study, b) study benefits, c) perceptions of survey questions, d) experiences with the research process, and e) preferences for disseminating research findings. Participants were motivated to learn with researchers about COVID-19. They expressed divided opinions about the relevance of INSPIRE research questions. They reported difficulties navigating the virtual research platform and the need for making survey participation less cognitively demanding. They sought more regular feedback on study findings. CONCLUSIONS: Our findings offered insights into incorporating decentralized participatory methods in longitudinal research, strengthening reciprocal research communications, making virtual research platforms user-friendly, and employing strategies to reduce participants' cognitive burden in research. POLICY IMPLICATIONS: Longitudinal studies should focus on optimizing these aspects of participant engagement to produce rigorous findings that inform policy and practice on lasting effects of COVID-19 including Long COVID. |
| Influence of filament loading technique on surrogate active pharmaceutical ingredient particle emissions during material extrusion 3D printing of tablets
Stefaniak AB , Bowers LN , Brusak ED , Streicher RP , Goyanes A , Friend SA , Hammond DR , LeBouf RF , Qi C , Virji MA . Int J Pharm 2025 682 125980 3D printing holds great promise to revolutionize pharmaceutical manufacturing, so for widespread clinical application, it is imperative to evaluate its safety and maximize its benefits. Herein, for the first time, particle emissions of the printing process of a model drug (fluorescein) were monitored in a test chamber to evaluate release. A filament extrusion-type 3D printer was used to make tablets from filaments loaded with fluorescein prepared by hot melt extrusion (HME) or diffusion (passive loading) techniques. Surface contamination of the printer was qualitatively documented. Average concentrations of fluorescein released into air during printing were below the analytical limit of detection for HME and 0.92 ± 0.20 ng/m(3) for diffusion. Particle yield from the aerodynamic particle sizer data (#/g extruded) during printing with HME filament (5.01 x 10(4)) was significantly lower (p < 0.05) compared with diffusion filament (1.07 x 10(6)). Mathematical modeling was used to predict where particles might deposit in the respiratory system if inhaled by a worker. Predictions showed larger fractions of particles deposited in the head and pulmonary (alveolar) regions from diffusion-loaded filament compared with HME, albeit non-significant. Fluorescein was transferred onto personal protective equipment (gloves) and printer surfaces, which indicated potential for dermal exposure and cross-contamination. Assuming our results are representative of active pharmaceutical ingredients, they support the importance of controls such as containment to minimize inhalation exposure and housekeeping to minimize dermal exposure and cross-contamination of tablets. |
| Influence of Resin Color and Printer Brand on Emissions from Stereolithography (SLA) 3-D Printers
Stefaniak AB , Brusak ED , Robinson S , Bowers LN , Roemer M , Matheson J , Friend SA , Virji MA . ACS Chem Health Saf 2025 Vat photopolymerization (VP) is an additive manufacturing process that uses light to harden resin and build a 3-dimensional shape. Stereolithography (SLA) printing is a variant of VP that uses a laser beam as the light source to initiate a polymerization reaction. During SLA printing, particles and gases can be emitted into the air; however, factors that influence emissions are poorly understood for this technology. Emissions from two brands of SLA printers from different manufacturers (herein termed A and B) were measured using real-time (particle number and size, total volatile organic compound [TVOC] concentration) and time-integrated (aldehydes, acrylates, aromatics, alkanes, butylated hydroxy toluene, and elements) techniques in an environmental test chamber. Three colors of resins (black, clear, and gray), all from the same manufacturer, were tested on each printer. All statistical comparisons used a significance level of 0.05. Printer brand strongly influenced the emission yields. Printer A had significantly higher particle number yield, smaller particle size, and higher 2-hydroxyethyl methacrylate (2-HEMA) and 2-hydroxypropyl methacrylate yields for all resin colors compared with printer B. There were also significant differences between brands in yield values for several aldehydes (acetaldehyde, butyraldehyde, hexaldehyde, isovaleraldehyde, o,m,p-tolualdehyde, and propionaldehyde). Resin color had a minor influence on yields for particle number, some aldehydes, and 2-HEMA for printer A only. The strong influence of printer brand on emissions was partially explained by printer configuration, i.e., printer A had a built-in resin heater, whereas printer B did not. Emission yields of organic chemicals were not always higher for printer A compared with printer B, which indicated that other factors also influenced emissions. Improved understanding of factors that influence emissions from SLA printers is critical for developing exposure mitigation strategies using a hierarchy of controls. Not subject to U.S. Copyright. Published 2025 by American Chemical Society. |
| Effectiveness of 2023-2024 seasonal influenza vaccine against influenza-associated emergency department and urgent care encounters among pregnant and non-pregnant women of reproductive age
Reeves EL , Dascomb K , Irving SA , Klein NP , Tartof SY , Grannis SJ , Ong TC , Ball SW , Vazquez-Benitez G , Sheffield T , Bride D , Arndorfer J , Van Otterloo J , Naleway AL , Koppolu P , Zerbo O , Jacobson KB , Fireman BH , Hansen JR , Block L , Salas SB , Bezi C , Sy LS , Reyes IAC , Dixon BE , Fadel WF , Rogerson C , Duszynski T , Mayer D , Chavez C , Barron MA , Weber ZA , Yang DH , Cheung A , Payne AB , Link-Gelles R , Adams K , Neelam V , DeSilva MB , Natarajan K , Tenforde MW , DeCuir J , Ellington S , Olson SM . Vaccine 2025 62 127483 Influenza vaccination is particularly important for pregnant women. Using a test-negative, case-control design, we estimated the effectiveness of 2023-2024 seasonal influenza vaccination against influenza-associated emergency department and urgent care (ED/UC) encounters among pregnant and non-pregnant women of reproductive age using data from seven healthcare systems. Eligible encounters were among individuals aged 18-49 years with documented female sex. Vaccine effectiveness (VE) was estimated by comparing the odds of vaccination among influenza-positive cases versus influenza-negative controls, adjusting for site, age, race/ethnicity, calendar time, and gestational age at encounter (in pregnant women). Among pregnant women (N = 3539), VE against influenza-associated ED/UC encounters was 46 % (95 % CI: 36-55) and did not differ by gestational age at vaccination. Among non-pregnant women (N = 57,709), VE against influenza-associated ED/UC encounters was 54 % (95 % CI: 51-56). Influenza vaccination during the 2023-2024 season was similarly effective in both pregnant and non-pregnant women and by timing of vaccine receipt during pregnancy. |
| Mental Health Symptoms and Receipt of Mental Health Care Among US Adults Diagnosed With Kidney Disease
Villarroel MA , Wang X . Prev Chronic Dis 2025 22 E34 INTRODUCTION: Nationally representative estimates of mental health symptoms and services in adults with kidney disease are limited. The objective of this study was to examine the mental health status and use of health care among adults with and without kidney disease. METHODS: We used data from the 2021 National Health Interview Survey. Diagnosed kidney disease is based on adults who reported ever being told by a doctor or other health professional that they had weak or failing kidneys. The survey question captures data on adults who are aware of having kidney disease and most likely have advanced kidney disease. Mental health measures examined were serious psychological distress (SPD), current symptoms of anxiety and depression, diagnosed anxiety and depressive disorder, prescription medication use for these disorders, and receipt of counseling. We used logistic regression models, with predicted marginal proportions, to calculate unadjusted and adjusted prevalence ratios, controlling for sociodemographic and health characteristics. RESULTS: About 2.9% of adults reported having a diagnosis of kidney disease; prevalence varied by sociodemographic and health characteristics. The prevalence of SPD; current symptoms of anxiety or depression or both; history of diagnosed anxiety or depression or both; and receiving counseling and prescription use for these disorders were higher among adults with kidney disease than among adults without kidney disease. In multivariable models adjusted for sociodemographic and health characteristics, adults with diagnosed kidney disease remained more likely than adults not diagnosed with kidney disease to experience mental health conditions and receive counseling. CONCLUSION: A survey of the US population found a higher prevalence of poor mental health and receipt of mental health care among people diagnosed with kidney disease than among people not diagnosed with kidney disease. |
| U.S. adults with diagnosed diabetes enrolled in Medicare by age and insurance type
Bardenheier BH , Bloom S , Andes LJ , Zhou X , Gravenstein S , Bullard KM . Preventive Med Reports 2025 56 Objective: To compare clinical and socioeconomic characteristics of U.S. Medicare beneficiaries overall and with diagnosed diabetes by age group (18–64 years and ≥65 years) and insurance type (traditional fee-for-service [FFS] vs Medicare Advantage [MA]) and to compare the prevalence of diabetes among beneficiaries by age group and type of insurance. Methods: In this retrospective, cross-sectional study from the U.S. Medicare Current Beneficiary Survey (MCBS), we combined data from 2017 to 2022 and conducted an unadjusted, pooled analysis of administrative and survey data, weighted to represent U.S. Medicare beneficiaries. We used logistic regression to assess difference by insurance type in care satisfaction. Results: Beneficiaries more likely to enroll in MA than FFS were the same groups at high risk of diabetes, including non-Hispanic Black (18–64: 21.2 % vs 15.9 %; ≥65: 11.4 % vs 6.5 %) and Hispanic (18–64: 14.4 % vs 8.9 %; ≥65: 11.0 % vs 5.4 %) populations, those with less than a high school education (≥65: 16.4 % vs 9.2 %) or annual income <$25,000 (18–64: 69.0 % vs 64.0 %; ≥65: 34.5 % vs 21.6 %), and full dual-eligible beneficiaries (≥65: 10.5 % vs 6.1 %). Beneficiaries with diabetes enrolled in MA did not differ from those enrolled in FFS in diabetes self-management or satisfaction with healthcare. Conclusions: Subgroups of people at highest risk of diabetes were more likely to enroll in MA. Our findings support studies reporting that people with diabetes self-select into MA, and their lack of difference in satisfaction between FFS and MA may support studies that report MA is no less effective than FFS in diabetes care. © 2025 The Authors |
| Trends in inpatient antibiotic use in Indonesia and the Philippines during the COVID-19 pandemic
Fazal AZ , McGovern OL , Mahon GW , Lessa FC , Gler MT , Garcia J , Festin MJ , Kuntaman K , Parwati I , Siregar C , Muere JCD , De Guzman Betito G , Montemayor M , De Leon A , Borillo E , Victor Llanes MR , Berba R , Rusli M , Qibtiyah M , Semedi BP , Sarassari R , Widyatmoko L , Andriyoko B , Md AKS , Turbawaty DK , Ranita ID , Ginting F , Joesoef RM , Krisna MA , Patel TS . Antimicrob Steward Healthc Epidemiol 2025 5 (1) e134 OBJECTIVE: Increased antibiotic use (AU) has been reported globally during the COVID-19 pandemic despite low rates of bacterial co-infection. We assessed changes in AU during the COVID-19 pandemic in Indonesia and the Philippines. METHODS: We evaluated hospital-wide AU over 36 months in six hospitals, 3 in Indonesia and 3 in the Philippines. Intravenous antibiotics commonly used for respiratory conditions were selected and grouped for analysis. AU rates were calculated as monthly defined daily dose per 1000 patient-days or patient discharges. Median AU rates were compared from the pre-pandemic (March 2018-February 2020) and pandemic periods (March 2020-February 2021) using quantile regression to assess for statistical significance. Changes in AU during the COVID-19 pandemic were analyzed using interrupted time series analysis. RESULTS: Significant increases were noted in the median AU rate from the pre-pandemic to pandemic period of all antibiotics combined in 3/6 hospitals (percentage change, Δ, 12.5%-63.6%) and anti-pseudomonal antibiotics in 3/6 hospitals (Δ 51.5%-161.5%). In the interrupted time series analysis, an immediate increase (range: 125.40-1762) in the use of all included antibiotics combined was observed in 3/6 hospitals at the onset of the COVID-19 pandemic. One of these 3 hospitals experienced a statistically significant sustained increase, while another experienced a decrease over time. CONCLUSIONS: We observed significant increases in facility-wide inpatient AU during the COVID-19 pandemic in our participating hospitals in Indonesia and the Philippines. These findings reinforce the importance of antibiotic stewardship practices to optimize AU, especially during infectious disease pandemics. |
| Characteristics of Noncancer Chronic Pain-Associated Ambulatory Care Visits, 2018-2019
Rikard SM , Ma W , Schmit KM , Guy GP Jr , Strahan AE . Pain Med 2025 |
| The effects of parental occupational exposures on autism spectrum disorder severity and skills in cognitive and adaptive domains in children with autism spectrum disorder
McCanlies EC , Gu JK , Ma CC , Sanderson WT , Ludeña-Rodriguez YJ , Hertz-Picciotto I . Int J Hyg Environ Health 2025 268 114613 |
| Rabies in livestock in the United States (2012-2021)
Payette-Stroman A , Ross Y , Ma X , Boutelle C , Holschbach C , Blanton JD , Wallace R . Am J Vet Res 2025 1-8
Rabies in livestock in the United States (US) poses a significant public health concern due to the potential for human exposure and economic losses to producers. Understanding the epidemiology of rabies in livestock supports broader One Health goals by enhancing early detection of viral incursions and protecting both animal and human health. This study assessed the epidemiology of rabies in livestock in the US from 2012 to 2021 using surveillance data reported to the National Rabies Surveillance System. A sensitivity analysis was conducted to estimate economic losses, including livestock value and human postexposure prophylaxis. A total of 947 rabid livestock were reported during the study period, with cattle accounting for 65.9% of cases. Skunk rabies virus variants were the most frequently identified variants (53.5%), and more than half of all rabid livestock were reported in Texas, Oklahoma, Kansas, Virginia, and North Carolina. When adjusted for livestock population, the highest infection rates occurred in the northeastern US. Estimated economic losses totaled $18.6 million (range, $9.8 to $39.6 million) assuming detection rates of 100% (lower bound) and 66% detection (upper bound). Rabid livestock are routinely detected in the US, with the highest number of rabies infections concentrated in 2 states, Texas and Virginia. Economic losses due to rabid livestock are sizeable, driven primarily by postexposure prophylaxis costs. Livestock vaccination should consider regional risk, animal value, and the potential for human exposure. The companion Currents in One Health by Nathan et al, JAVMA, forthcoming 2025, addresses patterns of rabies vaccine failures in domesticated animals. |
| Distribution of Arthritis Subtypes Among Adults With Arthritis in the United States, 2017-March 2020
Foster AL , Boring MA , Lites TD , Croft JE , Odom EL , Fallon EA . Prev Chronic Dis 2025 22 E28 INTRODUCTION: Arthritis is a common chronic disease, affecting an estimated 53.2 million adults (21.2%) in the US. "Arthritis" is a general term, describing over 100 conditions with different etiologies, pathogeneses, symptoms, and treatments. Few studies have examined the prevalence and distribution of arthritis subtypes in the US. METHODS: We used National Health and Nutrition Examination Survey data from 2017 to March 2020 to estimate the prevalence of arthritis subtypes overall and by sociodemographic characteristics. RESULTS: The overall prevalence of any type of diagnosed arthritis among US adults aged 20 years or older in this study was 27.9% (67.1 million). Among adults with diagnosed arthritis, osteoarthritis (49.6%, 33.2 million) was the most common arthritis subtype, followed by rheumatoid arthritis (15.8%, 10.6 million) and psoriatic arthritis (1.4%, 1.0 million). More than 1 in 10 reported some other type of unlisted arthritis (11.5%, 7.7 million), and 1 in 5 did not know their arthritis subtype (21.6%, 14.4 million). Prevalence of not knowing arthritis type was approximately 1 in 4 for adults identifying as non-Hispanic Black (26.7%) or other Hispanic (29.5%) and for adults who reported low family income (26.7%) and was approximately 1 in 3 for adults identifying as Mexican American (31.9%), having less than a high school education (31.8%), or not having health insurance (36.1%). CONCLUSION: Understanding arthritis type is important for improving treatment, self-management, and health outcomes associated with arthritis. Improving organizational and personal health literacy are potential strategies that may reduce the prevalence of not knowing arthritis type. |
| Improving containment and prevention strategies using a patient transfer network representative of patients with multidrug-resistant organisms
Octaria R , Deppen S , Chan A , Slaughter JC , Talley P , Slayton RB , Rebeiro PF , Kainer MA . Infect Control Hosp Epidemiol 2025 1-9 OBJECTIVES: Interfacility patient transfers contribute to the regional spread of multidrug-resistant organisms (MDROs). We evaluated whether transfer patterns of inpatients with similar characteristics to carbapenem-resistant Enterobacterales (CRE) case-patients (CRE surrogates) better reflect hospital-level CRE burden than traditionally used populations. DESIGN: We determined the risk factors for subsequent hospital admission using demographic and clinical information from Tennessee Department of Health tracked CRE case-patients from July 2015 to September 2019. Risk factors were used to identify CRE surrogates among inpatients in the 2018 Tennessee Hospital Discharge Data System (HDDS). Transfer networks of CRE surrogates, Medicare/TennCare beneficiaries, and all-inpatients with ≤365 days of intervening community stays were compared with the transfer networks of CRE case-patients in 2019. The associations between hospital-level CRE prevalence and hospitals' incoming transfer volumes from each network were assessed using negative binomial regression models. RESULTS: Eight risk factors for subsequent hospital admission were identified from 2,518 CRE case-patients, which were used to match CRE case-patients with HDDS inpatients, resulting in 10,069 surrogate patients. CRE surrogate network showed more structural similarities with the CRE case-patient network than with the all-inpatient and Medicare/TennCare networks. A 33% increase in hospitals' CRE prevalence in 2019 was associated with each doubling of incoming transfer of CRE surrogates in 2018 (adjusted Risk Ratio [aRR] 1.33, 95%CI: 1.1, 1.59), higher than all-inpatient (aRR 1.27, 95% CI: 1.08, 1.51) and Medicare/TennCare networks (aRR 1.21, 95% CI: 1.02, 1.44). CONCLUSIONS: Surrogate transfer patterns were associated with hospital-level CRE prevalence, highlighting their value in MDRO containment and prevention. |
| Antiviral Prescription in Children With Influenza in US Emergency Departments: New Vaccine Surveillance Network (NVSN), 2016-2020
Stopczynski T , Amarin JZ , Antoon JW , Hamdan O , Stewart LS , Chappell J , Spieker AJ , Klein EJ , Englund JA , Weinberg GA , Szilagyi PG , Williams JV , Michaels MG , Boom JA , Sahni LC , Staat MA , Schlaudecker EP , Schuster JE , Selvarangan R , Harrison CJ , Moline HL , Toepfer AP , Campbell AP , Olson SM , Halasa NB . Influenza Other Respir Viruses 2025 19 (6) e70124 BACKGROUND: Influenza contributes to a high burden of pediatric emergency department (ED) visits annually. Guidelines recommend outpatient antiviral treatment for children at higher risk of severe influenza and recommend considering treatment for those who present within 2 days of symptom onset. We describe antiviral prescription in children with influenza presenting to the ED. METHODS: We analyzed data from the New Vaccine Surveillance Network (2016-2020), including children presenting to the ED and enrolled with confirmed influenza at one of seven pediatric academic centers. We compared characteristics of children prescribed antivirals to those who were not, using generalized estimating equations models to identify predictors of antiviral prescription. Children were considered at higher risk of severe influenza if they were < 5 years old or had an underlying condition. RESULTS: Overall, 2472 (15%) of 16,915 enrolled children tested positive for influenza virus. Among these, 1931 (78%) were at higher risk of severe influenza; only 622 (32%) received an antiviral. Among 233 (9%) children not at high risk with symptom onset ≤ 2 days, 62 (27%) were prescribed an antiviral. Children prescribed an antiviral had a shorter duration of illness prior to presenting to the ED. For children at higher risk of severe influenza, odds of antiviral prescription were higher for those clinically tested for influenza and with underlying conditions. CONCLUSION: Clinical testing and having an underlying condition were associated with antiviral prescription in children at higher risk of severe influenza. However, only 1/3 of those at higher risk were prescribed an antiviral. Strategies to increase antiviral use for children at higher risk for influenza in the ED are needed. |
| Burden of disease and spectrum of illness from enterovirus-D68 infections in U.S. children 0-2 years of age from a longitudinal community-based cohort, 2017-2019
Teoh Z , Midgley CM , Conrey S , Burrell A , White B , Mattison CP , McMorrow ML , Schlaudecker EP , Vawter-Lee M , Morrow AL , Payne DC , Staat MA . J Pediatric Infect Dis Soc 2025 In this 2017-2019 community-based cohort, 245 healthy children were followed from birth to age two years. 46 EV-D68 infections were detected by nasal swabs, all between 08/2018-11/2018, with no detections in other study periods. 46% of infections met ARI criteria, of which 33% were medically attended; none required hospitalization. |
| Use of JYNNEOS (Smallpox and Mpox Vaccine, Live, Nonreplicating) for Persons Aged ≥18 Years at Risk for Mpox During an Mpox Outbreak: Recommendations of the Advisory Committee on Immunization Practices - United States, 2023
Rao AK , Minhaj FS , Carter RJ , Duffy J , Satheshkumar PS , Delaney KP , Quilter LAS , Kachur RE , McLean C , Moulia DL , Kuhar DT , de Perio MA , Spicknall IH , Bell BP , Sánchez PJ , Hutson CL , Cohn AC . MMWR Morb Mortal Wkly Rep 2025 74 (22) 385-392 Since the worldwide eradication of smallpox in 1980, orthopoxvirus vaccines had been used nearly exclusively by persons at risk for occupational exposure to orthopoxviruses, including Monkeypox virus, the virus that causes mpox. However, during recent years, the epidemiology of mpox has been changing in countries where the animal reservoirs are believed to live and where endemic transmission has been known to occur for decades. CDC issues outbreak-specific vaccination recommendations based on the epidemiology at the time specific cases or clusters are identified; however, because of the increased risk for U.S. mpox outbreaks, the Advisory Committee on Immunization Practices (ACIP) reviewed results from a previously performed modified Grading of Recommendations Assessment, Development, and Evaluation of the 2-dose JYNNEOS (smallpox and mpox vaccine, live, nonreplicating) vaccination series and an Evidence to Recommendations (EtR) framework addressing multiple domains (e.g., benefits, harms, and target population values and preferences). Based on this assessment, ACIP recommended the use of JYNNEOS (a live, replication-deficient vaccinia virus vaccine) for persons aged ≥18 years at risk for mpox during an mpox outbreak (irrespective of clade). Because the cause of future mpox outbreaks and the populations affected by these outbreaks remain uncertain, public health authorities will continue to issue outbreak-specific vaccination guidance when outbreaks occur. A clade IIb mpox outbreak that began in 2022 continued to cause substantial morbidity and mortality >1 year later. Although CDC had issued outbreak-specific vaccination guidance, it was anticipated that the outbreak would be protracted. For this reason, ACIP reviewed a second EtR framework about outbreaks and in 2023 recommended JYNNEOS for persons aged ≥18 years at risk for acquiring mpox during the multinational clade IIb outbreak. As of 2025, cases continue to occur; however, the future need for the recommendation will be reassessed as the outbreak evolves. Mpox vaccination is not routinely recommended for health care personnel during mpox outbreaks, including during the ongoing clade IIb outbreak. |
| COVID-19 Hospitalizations, Vaccine Uptake, Vaccination Guidelines, and Vaccine Availability in Six Middle-Income Countries and Areas in Europe, May 2022-April 2024
Whitehouse ER , Elish P , Kureta E , Kochinski D , Plavsa D , Chakhunashvili G , Kryeziu B , Abdyldaeva S , Ruiz MAS , Cohuet S , Humphreys J , Mersini K , Artemchuk O , Stosic M , Tarkhan-Mouravi O , Kalaveshi A , Otorbaeva D , Stavridis K , Bino S , Widdowson MA , Leidman E , Finci I , Katz MA . Influenza Other Respir Viruses 2025 19 (6) e70126 BACKGROUND: Updated regional data on COVID-19 epidemiology and vaccination can inform vaccine policies and implementation strategies. METHODS: We used surveillance data on patients hospitalized from the European SARI Vaccine Effectiveness (EuroSAVE) network to describe COVID-19 epidemiology and COVID-19 vaccine uptake among adults hospitalized with severe acute respiratory infection (SARI) in six middle-income countries and areas (CAs) in the WHO European region during 2022-2024. For SARI patients, we collected data on demographics, comorbidities, vaccination status, and hospital course, and a respiratory specimen, which was tested for SARS-CoV-2 by RT-PCR. In October 2024, we surveyed national public health institute staff on national COVID-19 vaccine guidelines and availability. RESULTS: Of SARI patients, 833/3982 (20.9%) and 367/3752 (9.8%) tested positive for SARS-CoV-2 during May 2022-April 2023 and May 2023-April 2024, respectively. Of COVID-19 patients, 857 (71.4%) were ≥60 years old and 713 (59.4%) had ≥1 comorbidity. A higher proportion of COVID-19 patients required mechanical ventilation (30 [8.2%] vs. 23 [2.8%], p <0.001) and intensive care (70 [8.4%] vs. 48 [13.1%], p =0.016) during May 2023-April 2024 compared to May 2022-April 2023. COVID-19 vaccination in the last 12 months decreased from 25% in 2022-2023 to 3% in 2023-2024. Most CAs had not updated their COVID-19 vaccination guidelines to recommend annual vaccination, and only two had vaccines available. CONCLUSIONS: Although COVID-19 was associated with severe disease among SARI patients, COVID-19 vaccination uptake was low among priority populations recommended for vaccination by WHO guidance. Continued efforts to understand reasons for low vaccine uptake and improve vaccine access will help protect those at greatest risk for COVID-19-associated morbidity and mortality. |
| Annual (2024) taxonomic update of RNA-directed RNA polymerase-encoding negative-sense RNA viruses (realm Riboviria: kingdom Orthornavirae: phylum Negarnaviricota)
Kuhn JH , Adkins S , Alkhovsky Альховский Сергей Владимирович SV , An 安雯霞 W , Avšič-Županc T , Ayllón MA , Bačnik K , Bahl J , Balkema-Buschmann A , Ballinger MJ , Beer M , Bejerman N , Bergeron É , Biedenkopf N , Blair CD , Blasdell KR , Bradfute SB , Briese T , Brown K , Brown PA , Buchholz UJ , Buchmeier MJ , Bukreyev A , Burt F , Calisher CH , Calvelage S , Cao 曹孟籍 M , Casas I , Chabi-Jesus C , Chandran K , Charrel RN , Crane A , Cuypers LN , Bó ED , de la Torre JC , de Souza WM , de Swart RL , Debat HJ , Dheilly NM , Di Paola N , Di Serio F , Dietzgen RG , Digiaro M , Drexler JF , Duprex WP , Dürrwald R , Easton AJ , Elbeaino T , Ergünay K , Eshak MIY , Feng 冯国忠 G , Firth AE , Fooks AR , Formenty PBH , Freitas-Astúa J , Freuling CM , Gadd T , Gago-Zachert S , García ML , García-Sastre A , Garrison AR , Goldberg TL , Gonzalez JJ , Goüy de Bellocq J , Griffiths A , Groschup MH , Gryseels S , Gutiérrez-Aguirre I , Günther S , Hammond J , Hepojoki J , Horie 堀江真行 M , Hume AJ , Hyndman TH , Höper D , Jiāng 姜道宏 D , Junglen S , Klempa B , Klingström J , Kondō 近藤秀樹 H , Koonin EV , Krupovic M , Kubota 久保田健嗣 K , Kurath G , Kutnjak D , Laenen L , Lambert AJ , Lee B , Li 李呈宇 C , Lǐ 李建荣 J , Li 李俊敏 JM , Lukashevich IS , Maes P , Marklewitz M , Marshall SH , Marzano SL , McCauley JW , Mehle N , Mirazimi A , Morikawa 守川俊幸 T , Mühlberger E , Müller T , Naidu R , Natsuaki 夏秋知英 T , Navarro B , Navarro JA , Neriya 煉谷裕太朗 Y , Netesov Нетёсов Сергей Викторович SV , Nicoloso VM , Neumann G , Nokireki T , Nowotny N , Nunes MRT , Ochoa-Corona FM , Palacios G , Pallás V , Papa Άννα Παπά A , Paraskevopoulou Σοφία Παρασκευοπούλου S , Parrish CR , Pauvolid-Corrêa A , Pecman A , Pérez DR , Pfaff F , Plemper RK , Postler TS , Radoshitzky SR , Ramos-González PL , Ravnikar M , Resende RO , Reuter G , Reyes CA , Rivarez MPS , Romanowski V , Rubbenstroth D , Rubino L , Runstadler JA , Ruiz-Padilla A , Sabanadzovic S , Salvato MS , Sasaya 笹谷孝英 IT , Schmaljohn CS , Schmidt-Posthaus H , Schwemmle M , Seljak G , Seuberlich T , Shi 施莽 M , Shimomoto 下元祥史 Y , Simmonds P , Sironi M , Smith DB , Smither S , Song 송진원 JW , Spann KM , Spengler JR , Stenglein MD , Takada 高田礼人 A , Takemura C , Tammiranta N , Tesh RB , Thornburg NJ , Tischler ND , Tomitaka 冨髙保弘 Y , Tomonaga 朝長啓造 K , Tordo N , Turina M , Tzanetakis Ιωάννης Ε Τζανετάκης IE , Vaira AM , van den Hoogen B , Vanmechelen B , Vasilakis Νίκος Βασιλάκης N , Verbeek M , von Bargen S , Vučurović A , Wada 和田治郎 J , Wahl V , Walker PJ , Wang 王飞 F , Whitfield AE , Williams JV , Wolf YI , Yanagisawa 栁澤広宣 H , Yang 杨彩霞 C , Ye 叶恭银 G , Yu 于美春 MC , Zerbini FM , Zhang S , Økland AL , Hughes HR . J Gen Virol 2025 106 (6)
In April 2024, following the annual International Committee on Taxonomy of Viruses (ICTV) ratification vote on newly proposed taxa, the phylum Negarnaviricota was expanded by 1 new order, 1 new family, 6 new subfamilies, 34 new genera and 270 new species. One class, two orders and six species were renamed. Seven families and 12 genera were moved; ten species were renamed and moved; and nine species were abolished. This article presents the updated taxonomy of Negarnaviricota as currently accepted by the ICTV, providing an essential annual update on the classification of members of this phylum that deepen understandings of their evolution, and supports critical public health measures for virus identification and tracking. |
| The crucial role the field epidemiology training program played in preparedness and response to the COVID-19 pandemic in Sierra Leone, January 2020 to August 2022
Gebru GN , Henderson AK , Elduma AH , Squire JS , Vandi MA , Moffett D , Foster M . Front Public Health 2025 13 1566824 BACKGROUND: On January 30, 2020, the World Health Organization declared COVID-19 a Public Health Emergency of International Concern (PHIEC). On March 11, 2020, it was characterized as a pandemic, prompting the Government of Sierra Leone to implement response plans. The first case in the country was reported on March 31, 2020. To build resilient public health systems after the Ebola crisis, the Sierra Leone Field Epidemiology Training Program (SLFETP) was launched in 2016 with funding from the U.S. CDC in collaboration with the Ministry of Health and the African Field Epidemiology Network (AFENET). The program started at the FETP Frontline level, a 3-month in-service training program, followed by the FETP Intermediate, a 9-month in-service training program launched in 2017. Both levels adopted the CDC curriculum to the local context. The curriculum consists of classroom modules focusing on surveillance, outbreak investigation, and field projects. The SLFETP graduates and trainees were deployed to assist in COVID-19 response efforts. While reports indicate the SLFETP's contributions to COVID-19 preparedness and response, the specific roles of its graduates and trainees remain undocumented. This paper outlines their crucial involvement during the pandemic in Sierra Leone. METHODS: We reviewed 12 documents from the SLFETP, including work plans, outbreak investigation reports, and success stories, to assess the FETP's contributions during the COVID-19 pandemic. We interviewed graduates and trainees about their roles and conducted discussions with stakeholders and FETP staff to explore the FETP's role during the pandemic's preparedness and response phases. A thematic analysis was performed. RESULTS: The SLFETP played a critical role during the preparedness and response phase of the COVID-19 pandemic. The trainees and graduates enhanced the surveillance system and led key response pillars, such as coordination, surveillance, and quarantine. SLFETP supported districts by building their capacity, especially in the district surveillance pillar, to conduct case investigations, contact tracing, quarantine monitoring, and data management. CONCLUSIONS: The graduates and trainees reportedly played critical roles in key response pillars across the country in the preparedness and response phase of the COVID-19 pandemic. These gains should be maintained and scaled up to build a strong and resilient public health workforce in Sierra Leone, which is crucial for preparedness and response to future outbreaks. |
| Mortality rates in a cohort of infants attending immunization clinics in Uganda (2017-2019)
Sendagala S , Nakityo RB , Makumbi F , Lutalo T , Nabitaka L , Nalugoda F , Lukabwe I , Kasule J , Namara-Lugolobi E , Okwero MA , Asiimwe HT , Namukanja P , Ng'eno B , Dirlikov E , Delaney A . PLoS One 2025 20 (5) e0324122 BACKGROUND: Uganda reported a significant reduction in the mortality rate of children under 5 years of age, from 146/1,000 live births in 2000-42/1,000 live births in 2021. With the rollout of Option B+, the vertical transmission rate of HIV decreased from 13.0% (2012) to 6.0% (2019). However, its impact on the mortality rate among children is not well documented. We determined the mortality rate and associated risk factors among infants exposed and not exposed to HIV attending immunization clinics in Uganda. METHODS: We conducted an observational prospective cohort study of mother-infant pairs (MIPs) with infants exposed or unexposed to HIV. We enrolled infants aged 4-12 weeks. The inclusion criteria were biological mothers attending health facilities that provide routine immunization for children and/or postnatal care visits who were able to provide signed written informed consent; mothers or infants who were not severely ill; and those who consented to have their infants tested for HIV antibodies at baseline and follow-up visits every 3 months until the children were aged 18 months. Child-HIV infection and death were censored events. Children lost to follow-up or withdrawn from the study were censored from analyses at the last documented study visit. The outcome of interest was child mortality, and the independent variables were mother's age; infant HIV exposure status; infant sex; family socioeconomic status; marital status; education level; malaria during pregnancy; birth attendee; mother's ART initiation; mode of transport to health facilities; breastfeeding pattern; 4 or more ANC visits; and mother's baseline viral load nonsuppression and place of delivery. We used Kaplan-Meier survival curves to estimate cumulative mortality probability and the Wilcoxon log-rank test to compare differences in cumulative survival functions. We used multivariate Weibull proportional hazards and Weibull accelerated failure time (AFT) regression models with 95% confidence intervals (CIs) to identify factors associated with child death. RESULTS: Among the 16,718 MIPs identified, 11,519 (68.9%) mothers consented to study follow-up. At the 18-month follow-up, 0.7% (79/11,519) of the infants had died, 40.5% (32/79) of whom were exposed to HIV. The overall child mortality rate per 1,000 person-years was 5.0 (95% CI: 4.0--6.2) and was significantly greater among the infants exposed to HIV (14.2; 95% CI: 10.0--20.0) than among the infants not exposed to HIV (3.5; 95% CI: 2.6--4.6). In the adjusted model, the mortality risk factors were HIV exposure status (aHR5.6 95% CI: 3.5--9.4), maternal age < 25 years (aHR1.8; 95% CI: 1.1--2.9), living without a partner (aHR1.8; 95% CI: 1.1--2.9), and delivery at home (aHR2.2; 95% CI: 1.3--4.0). CONCLUSION: Single young mothers living with HIV delivering at home increased the risk of child mortality. Identifying mothers with risk factors early for support could reduce the risk of child mortality. |
| Short-term Impact of Changes in Public Health Information Systems on Sexually Transmitted Infection Surveillance Data Quality
Angles JS , Torrone EA , Pondo T , Pagaoa MA , Martin EG . Sex Transm Dis 2025 Jurisdictional health departments use public health information systems (PHIS) to maintain and transmit their surveillance data for national surveillance. We investigated if changes to a PHIS had an impact on sexually transmitted infection case-based surveillance data and document short-term issues that resulted in decreased data quality. |
| Population-Based Active Surveillance for Culture-Confirmed Candidemia - 10 Sites, United States, 2017-2021
Jenkins EN , Gold JAW , Benedict K , Lockhart SR , Berkow EL , Dixon T , Shack SL , Witt LS , Harrison LH , Seopaul S , Correa MA , Fitzsimons M , Jabarkhyl Y , Barter D , Czaja CA , Johnston H , Markus T , Schaffner W , Gross A , Lynfield R , Tourdot L , Nadle J , Roland J , Escutia G , Zhang AY , Gellert A , Hurley C , Tesini BL , Phipps EC , Davis SS , Lyman M . MMWR Surveill Summ 2025 74 (4) 1-15 PROBLEM/CONDITION: Candidemia, a bloodstream infection caused by Candida spp., is a common cause of health care-associated bloodstream infections in the United States. Candidemia is associated with substantial health care costs, morbidity, and mortality. PERIOD COVERED: 2017-2021. DESCRIPTION OF SYSTEM: CDC's Emerging Infections Program (EIP), a collaboration among CDC, state health departments, and academic partners, was used to conduct active, population-based laboratory surveillance for candidemia at city or county sites located in 10 states (California, Colorado, Connecticut, Georgia, Maryland, Minnesota, New Mexico, New York, Oregon, and Tennessee), representing a combined population of approximately 21.5 million persons, or 7% of the U.S. population in 2019. Connecticut began reporting cases on January 1, 2019, and conducts statewide surveillance. Although candidemia is not a nationally notifiable condition, cases of Candida auris infection are nationally notifiable, and cases of candidemia caused by C. auris could be included in both national case counts and EIP surveillance. A culture-confirmed candidemia case is defined as a positive blood culture for any Candida sp. from a resident in the surveillance catchment area. Subsequent positive blood cultures for Candida within 30 days of the initial positive culture (index date) in the same patient are considered part of the same case. Clinical laboratories serving each catchment area report candidemia cases, and trained surveillance officers abstract information from medical charts for all cases. Corresponding isolates are sent to CDC for species confirmation and antifungal susceptibility testing. RESULTS: A total of 7,381 candidemia cases were identified during the surveillance period (2017-2021). The overall incidence was 7.4 cases per 100,000 population. Across age groups, sexes, racial and ethnic groups, and surveillance sites, incidence was generally stable or increased slightly from 2017 to 2021, with the lowest overall incidence in 2019 (6.8) and the highest in 2021 (7.9). In 2021, candidemia incidence was highest in patients aged ≥65 years (22.7) and infants (aged <1 year) (8.0). Incidence was higher in males (8.7) compared with females (7.0) and higher in non-Hispanic Black or African American (Black) patients (12.8) compared with non-Black patients (5.6). Incidence was highest in Maryland (14.5), followed by Tennessee (10.1) and Georgia (10.0); incidence was lowest in Oregon (4.8). Increases occurred in the percentage of cases classified as health care onset (52.2% in 2017 to 58.0% in 2021). Overall, among 7,381 cases (in 6,235 patients), 63.7% occurred in patients who had a central venous catheter, 80.7% involved recent systemic antibiotic receipt, and 9.0% occurred in patients who had a history of injection drug use. The percentage of cases with a positive SARS-CoV-2 test during the 90 days before or after the index date increased from 10.4% in 2020 to 17.7% in 2021. From 2017 to 2021, the percentage of cases involving an intensive care unit stay before the index date increased from 38.3% to 44.9%. Echinocandins (e.g., micafungin) were used as treatment in 49.8% of cases, and azoles were used in 47.7%. The all-cause in-hospital mortality rate was 32.6%; this increased from 26.8% in 2019 to 36.1% in 2021. Overall, Candida albicans accounted for 37.1% of cases, followed by Candida glabrata (30.4%) and Candida parapsilosis (13.5%); however, C. glabrata was the most frequent species in California (38.4%) and Maryland (32.9%). Candida auris infections accounted for 0.4% of cases. Among 6,576 Candida isolates for which interpretive breakpoints exist and isolates were available for testing, 5.6% were fluconazole resistant, and <1% were echinocandin resistant. Antifungal resistance was stable for all antifungals tested across years. INTERPRETATION: Candidemia remains an important health care-associated infection. The disproportionate incidence among older adults, males, and Black patients is consistent with previous reports, and the overall incidence of candidemia has not changed substantially compared with previous EIP findings based on data collected during 2012-2016 (8.7 per 100,000 population). The higher mortality rate associated with candidemia during 2020-2021 likely reflects consequences of the COVID-19 pandemic, including strained health care systems and an increased population of patients who were susceptible to candidemia because of COVID-19-related critical illness. PUBLIC HEALTH ACTION: Strict implementation of measures to prevent health care-associated bloodstream infections is important to help prevent candidemia cases. Health care officials and providers should be vigilant for candidemia as a complication of critical illness. Continued surveillance is needed to monitor for emerging populations at risk for candidemia and changes in antifungal resistance patterns, which can help guide antifungal treatment selection. |
| Sero-prevalence of SARS-CoV-2 antibodies in Ethiopia: Results of the National Population Based Survey, 2021
Tasew G , Abdella S , Bejiga B , Ayalew J , Tessema M , Bati F , Ali A , Negash L , Birru E , Tollera G , Ahmed M , Tayachew A , Nigussie D , Binkley L , Balada-Llasat JM , Wang SH , Lisanwork L , Mekuria ZH , Moges H , Barekye B , Loembe MM , Aziz MA , Ejeta E , Kassim F , Gebreyes W , Gebeyehu A , Tadsse L , Duguma D , Yimer G , Williams DE . PLoS One 2025 20 (5) e0313791 BACKGROUND: SARS-CoV-2 pandemic has caused a continuing health crisis affecting the public health system globally. Population-based serological surveys are a highly valuable and recommended method to measure population exposure and spread of pandemic, given the existence of asymptomatic cases and little access to diagnostic testing. This national population-based study aims to estimate the seroprevalence of SARS-CoV-2 infection in all parts of Ethiopia and determine potential risk factors and burden of infection. METHODS: A nationwide seroprevalence survey was done among 12,756 households (HHs) across the country using three-stage stratified sampling technique from April 15, 2021 to May 16, 2021 among population of Ethiopia above 15 years of age. One member of each of the selected HHs, who fulfilled the eligibility criteria, was randomly selected. We captured data using interviews and finger prick blood samples to test for anti-SARS-CoV-2 antibodies using high specificity rapid diagnostic tests (RDTs). A questionnaire was used to capture all necessary data on demographics, social exposure, and history of vaccination for SARS-CoV-2, symptoms compatible with SARS-CoV-2, and any known medical conditions. The data were collected using an open data kits (ODK) software and imported into STATA version 17 for analysis. Descriptive statistics (frequencies and proportions) were used to summarize data on the study variables. Forest plots and maps were used to visualize the seroprevalence of SARS-CoV-2 across various individual and environmental factors. The study sample was weighted, and the survey set command in Stata (svy) was used in the analyses to account for the survey design. Adjusted Odd ratio (AOR) was used to determine higher risk factors of having been infected at least once, 95% confidence interval to assess precision of the estimates, and a P value ≤ 0.05 to determine statistically significant. RESULT AND DISCUSSION: This study indicated the overall national prevalence of seropositivity was 9.3% that suggests nearly one in ten individuals in Ethiopia was exposed to SARS-CoV-2 infection by May 2021. All regional states in the country are affected with SARS-CoV-2 infection although infection was more common in densely populated regions. Seroprevalence was significantly higher among, individual, aged 35-44, 55-64 and 65 and over years had more odds of being infected by SARS-CoV-2 compared with those aged 15-24 years. The seroprevalence is also high among professional/technical occupations, and among those having at least one comorbidity. The participants who had seven and more members had higher odds of infection compared with those who had two or less members. The odds of infection among respondents, who reported having ever tested for COVID-19 and being sick since March 2020, were higher compared with their counterparts. Among the environmental factors, the odds of SARS-CoV-2 infection in urban residents were higher than in the rural setting. In relation to geographic administration boundaries, participants from Harari Region, Addis Ababa, and Benishangul Gumuz had higher odds of infection compared to those from Afar Regions respective. CONCLUSION AND RECOMMENDATIONS: This study reveals the overall seroprevalence of SARS CoV-2 antibodies in Ethiopia was 10.0% as of May 2021. The seroprevalence of IgG antibodies against COVID-19 is higher than that of IgM antibodies, indicating a past infection. SARS-CoV-2 antibody seroprevalence was varied by regional state, sex, residence area, age, and occupational status. It also suggests that the majority of Ethiopia's have inadequate knowledge of understanding about SARS-CoV-2 antibodies, we recommend strengthening public health and social measures to mitigate the spread of COVID-19 diseases, including increased vaccination coverage and testing capability. All responsible authorities and stakeholders working locally, nationally, and globally need to support strengthening health systems and be prepared to combat morbidity and mortality and to encourage ongoing vaccination efforts. Periodic seroprevalence surveys will aid in monitoring the status and progress of the COVID-19 pandemic. |
| Comparison and bias analysis of medically attended acute gastroenteritis incidence estimates derived from electronic health record surveillance versus cross-sectional surveys
Calderwood LE , Burke RM , Mattison CP , Schmidt MA , Groom HC , Donald J , Hall AJ , Mirza SA . PLoS One 2025 20 (5) e0323425 Disease burden studies commonly use data from electronic health records (EHRs) or community surveys. Quantitative bias assessments of these study designs are needed. We compared two studies on acute gastroenteritis (AGE) burden conducted in an integrated healthcare system in Oregon and Washington, USA. EHRs were used to identify AGE patients who sought care during July 2014 - June 2016 and determine the incidence of medically attended AGE (MAAGE). Members from the same health care system were surveyed during September 2016 - September 2017 to estimate community AGE incidence. MAAGE incidence was calculated using the rate of reported healthcare seeking among survey respondents and compared to the estimate derived from the EHR study. Survey respondents' EHR data were used to conduct a bias analysis. MAAGE incidence from survey respondents was 6.1 times higher than the EHR derived MAAGE estimate. Among survey respondents who self-reported contacting KPNW for an AGE episode, 36.3% had an AGE-coded encounter in the EHR during the same timeframe, and among those who reported no contact (either no AGE or AGE without medical attention), 2.6% did have an AGE-coded encounter. Potential noninfectious explanations for symptoms were reported by 35% of ill survey respondents. We quantify misclassification bias in both studies and discuss other potential sources of bias. Researchers should consider these biases when designing disease burden studies and consider including sensitivity analyses in published work. |
| Botulism Type F: Foodborne or Adult Intestinal Colonization?
Pourshams I , Kumbham P , Ranga S , Calloway KN , Patil N , Waltenburg MA . Gastro Hep Adv 2025 4 (5) 100623 A 45-year-old woman presented to urgent care suspecting an allergic reaction to foods that were consumed the previous evening. Her condition rapidly deteriorated to include cranial nerve palsies followed by a descending symmetric muscle weakness requiring mechanical ventilation. Botulism was suspected, and after consultation with public health experts at the state health department and Centers for Disease Control and Prevention, treatment with botulism antitoxin was initiated. The patient required prolonged ventilation and rehabilitation but achieved near-complete recovery after several weeks. Botulinum neurotoxin type F was detected in the patient's serum. Serial testing of the patient's clinical specimens was not performed. The patient's rapid progression to severe paralysis with a relatively swift recovery resembles previously described botulism type F cases. Public health investigations were unable to determine whether the patient had foodborne or adult intestinal colonization botulism. |
| Technical recommendations for analyzing oxylipins by liquid chromatography-mass spectrometry
Schebb NH , Kampschulte N , Hagn G , Plitzko K , Meckelmann SW , Ghosh S , Joshi R , Kuligowski J , Vuckovic D , Botana MT , Sánchez-Illana Á , Zandkarimi F , Das A , Yang J , Schmidt L , Checa A , Roche HM , Armando AM , Edin ML , Lih FB , Aristizabal-Henao JJ , Miyamoto S , Giuffrida F , Moussaieff A , Domingues R , Rothe M , Hinz C , Das US , Rund KM , Taha AY , Hofstetter RK , Werner M , Werz O , Kahnt AS , Bertrand-Michel J , Le Faouder P , Gurke R , Thomas D , Torta F , Milic I , Dias IHK , Spickett CM , Biagini D , Lomonaco T , Idborg H , Liu JY , Fedorova M , Ford DA , Barden A , Mori TA , Kennedy PD , Maxey K , Ivanisevic J , Gallart-Ayala H , Gladine C , Wenk M , Galano JM , Durand T , Stark KD , Barbas C , Garscha U , Gelhaus SL , Ceglarek U , Flamand N , Griffin JL , Ahrends R , Arita M , Zeldin DC , Schopfer FJ , Quehenberger O , Julian R , Nicolaou A , Blair IA , Murphy MP , Hammock BD , Freeman B , Liebisch G , Serhan CN , Köfeler HC , Jakobsson PJ , Steinhilber D , Gelb MH , Holčapek M , Andrew R , Giera M , FitzGerald GA , Murphy RC , Newman JW , Dennis EA , Ekroos K , Milne GL , Gijón MA , Vesper HW , Wheelock CE , O'Donnell VB . Sci Signal 2025 18 (887) eadw1245
Several oxylipins are potent lipid mediators that regulate diverse aspects of health and disease and whose quantitative analysis by liquid chromatography-mass spectrometry (LC-MS) presents substantial technical challenges. As members of the lipidomics community, we developed technical recommendations to ensure best practices when quantifying oxylipins by LC-MS. |
| Lung lipids associated with smoking and ECIG use in a cross-sectional study and clinical trial
McElroy JP , Song MA , Barr JR , Gardner MS , Kinnebrew G , Kuklenyik Z , Kusovschi JD , Rees JC , Blount BC , Tsai M , Wewers MD , Kamel S , Reisinger SA , Singh A , Weng DY , Shields PG . Respir Res 2025 26 (1) 193 BACKGROUND: While electronic cigarettes (ECIG) may have lower toxicant delivery than cigarettes, ECIG-liquids and aerosols still contain toxicants that can potentially disrupt lung lipid homeostasis. METHODS: Participants from two studies underwent bronchoscopy and bronchoalveolar lavage (BAL). Ninety-eight participants (21-44 years old) were included in a cross-sectional study, with 17 ECIG users, 52 non-smokers, and 29 smokers. In the four-week clinical trial, 30 non-smokers were randomly assigned to use nicotine-free, flavorless ECIG or no use. A panel of 75 quantifiable lipid species and 7 lipid classes were assessed in the BAL using two tandem mass spectrometry (MS/MS) platforms. Ten cytokines and lipid-laden macrophages (LLM) were analyzed using the V-PLEX Plus Proinflam Combo 10 panel and Oil Red O staining, respectively. RESULTS: In the cross-sectional study, 43 lipids were associated with smoking status at FDR<0.1, including two between ECIG and non-smokers (PC(14:0/18:1) and PC(18:0/14:0)) in pairwise follow-up analyses (Bonferroni-adjusted p<0.017). Associations between lipid species and cotinine, inflammatory markers, including IL-1β and IL-8, and LLM were also identified, as well as differences in lipid classes between smokers and the other groups. Smokers had higher saturated lipids, including ceramide (CER), sphingomyelin (SM), and diacylglycerol (DAG) than that of non-smokers and ECIG users. No significant associations were identified in the 4-week clinical trial. CONCLUSIONS: Smoking was associated with altered lipid levels, as compared to both non-smokers and ECIG users; the majority were downregulated and ECIG effects tend to be smaller in magnitude than smoking effects, although some were different than those in the smokers group. This is a novel study of healthy individuals examining lipidomic differences between smokers, ECIG users, and non-smokers, indicating potential roles of smoking and ECIG-related lipid alterations in pulmonary disease. TRIAL REGISTRATION: The study was approved by The OSU Institutional Review Board (OSU-2015C0088) in accordance with its ethical standards, the Helsinki declaration, and the Belmont Report, and is registered on Clinicaltrials.gov (NCT02596685; 2015-11-04). |
| Respiratory Syncytial Virus Co-Detection With Other Respiratory Viruses Is Not Significantly Associated With Worse Clinical Outcomes Among Children Aged <2 Years: New Vaccine Surveillance Network, 2016-2020
Amarin JZ , Toepfer AP , Spieker AJ , Hayek H , Stopczynski T , Qwaider YZ , Stewart LS , Chappell JD , Staat MA , Schlaudecker EP , Weinberg GA , Szilagyi PG , Englund JA , Klein EJ , Michaels MG , Williams JV , Selvarangan R , Harrison CJ , Sahni LC , Avadhanula V , McMorrow ML , Moline HL , Halasa NB . Clin Infect Dis 2025 BACKGROUND: Risk factors for severe respiratory syncytial virus (RSV) illness include early infancy, premature birth, and underlying medical conditions. However, the clinical significance of respiratory viral co-detection is unclear. We compared the clinical outcomes of young children with RSV-only detection and those with RSV viral co-detection. METHODS: We conducted active, population-based surveillance of children with medically attended fever or respiratory symptoms at 7 US medical centers (1 December 2016-31 March 2020). Demographic and clinical data were collected through parental interviews and chart abstractions. Nasal swabs, with or without throat swabs, were systematically tested for RSV and 6 other common respiratory virus groups. We compared clinical outcomes, including hospitalization, and among those hospitalized, length of stay, intensive care unit admission, supplemental oxygen use, and intubation, between children aged <2 years with RSV-only detection and those with RSV co-detection. RESULTS: We enrolled 18 008 children aged <2 years. Of 17 841 (99.1%) tested for RSV, 5099 (28.6%) were positive. RSV was singly detected in 3927 children (77.0%) and co-detected in 1172 (23.0%). RSV co-detection with parainfluenza virus or adenovirus was associated with significantly lower odds of hospitalization (adjusted odds ratio, 0.56; 95% confidence interval [CI]: .33-.95; P = .031) and supplemental oxygen use (adjusted odds ratio, 0.66; 95% CI: .46-.95; P = .026), respectively, than RSV-only detection. For all other comparisons, we did not identify a significant association between RSV co-detection and worse clinical outcomes. CONCLUSIONS: Co-detection of RSV with another respiratory virus was not significantly associated with worse clinical outcomes compared with RSV-only detection. |
| Enterovirus D68-Associated Respiratory Illness in Children
Clopper BR , Lopez AS , Goldstein LA , Ng TFF , Toepfer AP , Staat MA , Schlaudecker EP , Sahni LC , Boom JA , Schuster JE , Selvarangan R , Halasa NB , Stewart LS , Williams JV , Michaels MG , Weinberg GA , Szilagyi PG , Klein EJ , Englund JA , McMorrow ML , Moline HL , Midgley CM . JAMA Netw Open 2025 8 (5) e259131 IMPORTANCE: Enterovirus D68 (EV-D68) typically causes mild to severe acute respiratory illness (ARI). Testing and surveillance for EV-D68 in the US are limited, and important epidemiologic gaps remain. OBJECTIVE: To characterize the epidemiology and clinical severity of EV-D68 among US children seeking care for ARI from 2017 to 2022, using a multisite, active, systematic surveillance network. DESIGN, SETTING, AND PARTICIPANTS: This cross-sectional study collected data from the New Vaccine Surveillance Network, an active, prospective, population-based surveillance system of emergency departments (EDs) and hospitals at 7 US academic medical centers. Children with ARI and EV-D68-positive results were enrolled during platform-wide EV-D68 testing periods (July to October 2017, July to November 2018, July to November 2020, and July 2021 to December 2022). Included children were aged younger than 18 years, reported 1 or more qualifying ARI symptoms, with a symptom duration less than 14 days at enrollment. Data were analyzed from in October 2024. EXPOSURES: Laboratory-confirmed EV-D68 infection, including overall infections or those without viral codetection. MAIN OUTCOMES AND MEASURES: Trends and characteristics of EV-D68, including demographics, underlying conditions, and clinical severity by health care setting, were explored. Among hospitalized children with EV-D68-positive results without viral codetection, multivariable logistic regression was used to examine factors associated with receipt of (1) supplemental oxygen or (2) intensive care. RESULTS: From 2017 to 2022, 976 children with EV-D68-positive results were identified (median [IQR] age, 47 [18-63] months; 391 [40.1%] female); most were enrolled in 2018 (382 children) and 2022 (533 children). Among these, 856 had no viral codetection, of which 320 were discharged home from the ED (median [IQR] age, 33 [16-59] months; 180 male [56.3%]; 237 [74.1%] with no reported underlying conditions) and 536 were hospitalized (median [IQR] age, 40 [19-69] months; 330 male [61.6%]; 268 [50.0%] with no reported underlying conditions). Among those hospitalized, 199 (37.1%) reported a history of asthma or reactive airway disease (RAD) and 77 (14.4%) reported a condition other than asthma or RAD. Having an underlying condition other than asthma or RAD was associated with increased odds of receiving supplemental oxygen (adjusted odds ratio, 2.72; 95% CI, 1.43-5.18) or intensive care admission (adjusted odds ratio, 3.09; 95% CI, 1.72-5.56); neither age group nor history of asthma or RAD were associated with oxygen receipt or intensive care admission. CONCLUSIONS AND RELEVANCE: In this cross-sectional study of children with medically attended EV-D68 infections, EV-D68 was associated with severe disease in otherwise healthy children of all ages, and children with nonasthma or RAD comorbidities were at higher risk for severe outcomes when hospitalized. |
| A Decade of Partnerships and Progress in Pathogen Genomics in Public Health Practice
MacCannell D , MacInnis B , Santibanez S , Honein MA , Kuhnert W , Braden C . Emerg Infect Dis 2025 31 (13) 1-2
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