Skip directly to search Skip directly to A to Z list Skip directly to navigation Skip directly to page options Skip directly to site content

CDC Science Clips
COVID-10 GPH

Last data update: Aug 15, 2025. (Total: 49733 publications since 2009)
(Author names in bold with hyperlink are CDC authors)
Filtered By:
Order By:
Records 1-1 (of 1 Records)
Query Trace: Guzman-Cole C [original query]
nf-UnO-pipeline: A Nextflow metagenomic co-assembly pipeline for novel pathogen detection of mNGS outbreak sets
Guzman-Cole C , Huang AD .
Bioinformatics 2025 type

MOTIVATION: nf-UnO is a pipeline implemented in Nextflow to identify novel pathogens from metagenomic shotgun sequencing of epidemiologically-related foodborne outbreak specimens. nf-UnO employs MIDAS2, metagenomic co-assembly, multiple binning programs, and read mapping to metagenomically-assembled genomes (MAGs) to detect potential etiological agents found in common across outbreak specimens. AVAILABILITY: https://github.com/uel3/nf-UnO.
TOP