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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Nov 22, 2022. (Total: 4101 publications since 2011)
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Records 1-26 (of 26 Records)
Query Trace: all>>Peter Gerner-Smidt[CDC Author]
PulseNet International Survey on the Implementation of Whole Genome Sequencing in Low and Middle-Income Countries for Foodborne Disease Surveillance.
Taylor Davedow, Heather Carleton, Kristy Kubota, Daniel Palm, Morgan Schroeder, Peter Gerner-Smidt, Amina Al-Jardani, Isabel Chinen, Kai Man Kam, Anthony M Smith, and Celine Nadon
Foodborne pathogens and disease 2022
The Use of Whole-Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States.
Eric L Stevens, Heather A Carleton, Jennifer Beal, Glenn E Tillman, Rebecca L Lindsey, A C Lauer, Arthur Pightling, Karen G Jarvis, Andrea Ottesen, Padmini Ramachandran, Leslie Hintz, Lee S Katz, Jason P Folster, Jean M Whichard, Eija Trees, Ruth E Timme, Patrick McDermott, Beverly Wolpert, Michael Bazaco, Shaohua Zhao, Sabina Lindley, Beau B Bruce, Patricia M Griffin, Eric Brown, Marc Allard, Sandra Tallent, Kari Irvin, Maria Hoffmann, Matt Wise, Robert Tauxe, Peter Gerner-Smidt, Mustafa Simmons, Bonnie Kissler, Stephanie Defibaugh-Chavez, William Klimke, Richa Agarwala, James Lindsay, Kimberly Cook, Suelee Robbe Austerman, David Goldman, Sherri McGarry, Kis Robertson Hale, Uday Dessai, Steven M Musser, and Chris Braden
Journal of food protection 2022
Emergence and global spread of Listeria monocytogenes main clinical clonal complex.
Alexandra Moura, Noémie Lefrancq, Thierry Wirth, Alexandre Leclercq, Vítor Borges, Brent Gilpin, Timothy J Dallman, Joachim Frey, Eelco Franz, Eva M Nielsen, Juno Thomas, Arthur Pightling, Benjamin P Howden, Cheryl L Tarr, Peter Gerner-Smidt, Simon Cauchemez, Henrik Salje, Sylvain Brisse, Marc Lecuit, and
Science advances 2021 7(49) eabj9805
Free-Living Aquatic Turtles as Sentinels of Salmonella spp. for Water Bodies.
Sonia M Hernandez, John J Maurer, Michael J Yabsley, Valerie E Peters, Andrea Presotto, Maureen H Murray, Shannon Curry, Susan Sanchez, Peter Gerner-Smidt, Kelley Hise, Joyce Huang, Kasey Johnson, Tiffany Kwan, and Erin K Lipp
Frontiers in veterinary science 2021 8674973
Advancing biological hazards risk assessment.
Winy Messens, Marta Hugas, Ana Afonso, Jaime Aguilera, Thomas U Berendonk, Alessandra Carattoli, Sofie Dhollander, Peter Gerner-Smidt, Nikolaus Kriz, Ernesto Liebana, Jolyon Medlock, Tobin Robinson, Pietro Stella, David Waltner-Toews, and Mike Catchpole
EFSA journal. European Food Safety Authority 2019 Jul 17(Suppl 1) e170714
Corrigendum: Whole Genome Sequencing: Bridging One-Health Surveillance of Foodborne Diseases.
Peter Gerner-Smidt, John Besser, Jeniffer Concepción-Acevedo, Jason P Folster, Jasmine Huffman, Lavin A Joseph, Zuzana Kucerova, Megin C Nichols, Colin A Schwensohn, and Beth Tolar
Frontiers in public health 2019 7365
PulseNet and the Changing Paradigm of Laboratory-Based Surveillance for Foodborne Diseases.
Kristy A Kubota, William J Wolfgang, Deborah J Baker, David Boxrud, Lauren Turner, Eija Trees, Heather A Carleton, and Peter Gerner-Smidt
Public health reports (Washington, D.C. : 1974) (2_suppl) 22S-28S
Whole Genome Sequencing: Bridging One-Health Surveillance of Foodborne Diseases.
Peter Gerner-Smidt, John Besser, Jeniffer Concepción-Acevedo, Jason P Folster, Jasmine Huffman, Lavin A Joseph, Zuzana Kucerova, Megin C Nichols, Colin A Schwensohn, and Beth Tolar
Frontiers in public health 2019 172
PulseNet: Entering the Age of Next-Generation Sequencing.
Efrain M Ribot, Molly Freeman, Kelley B Hise, and Peter Gerner-Smidt
Foodborne pathogens and disease 2019 Jun
Interpretation of Whole-Genome Sequencing for Enteric Disease Surveillance and Outbreak Investigation.
John M Besser, Heather A Carleton, Eija Trees, Steven G Stroika, Kelley Hise, Matthew Wise, and Peter Gerner-Smidt
Foodborne pathogens and disease 2019 Jun
Use of Whole-Genome Sequencing for Food Safety and Public Health in the United States.
Eric Brown, Uday Dessai, Sherri McGarry, and Peter Gerner-Smidt
Foodborne pathogens and disease 2019 Jun
Metagenomic Approaches for Public Health Surveillance of Foodborne Infections: Opportunities and Challenges.
Heather A Carleton, John Besser, Amanda J Williams-Newkirk, Andrew Huang, Eija Trees, and Peter Gerner-Smidt
Foodborne pathogens and disease 2019 Jun
An Overview of PulseNet USA Databases.
Beth Tolar, Lavin A Joseph, Morgan N Schroeder, Steven Stroika, Efrain M Ribot, Kelley B Hise, and Peter Gerner-Smidt
Foodborne pathogens and disease 2019 May
Implementation of Nationwide Real-time Whole-genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation.
Brendan R Jackson, Cheryl Tarr, Errol Strain, Kelly A Jackson, Amanda Conrad, Heather Carleton, Lee S Katz, Steven Stroika, L Hannah Gould, Rajal K Mody, Benjamin J Silk, Jennifer Beal, Yi Chen, Ruth Timme, Matthew Doyle, Angela Fields, Matthew Wise, Glenn Tillman, Stephanie Defibaugh-Chavez, Zuzana Kucerova, Ashley Sabol, Katie Roache, Eija Trees, Mustafa Simmons, Jamie Wasilenko, Kristy Kubota, Hannes Pouseele, William Klimke, John Besser, Eric Brown, Marc Allard, and Peter Gerner-Smidt
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 63(3) 380-6
The use of next generation sequencing for improving food safety: Translation into practice.
Balamurugan Jagadeesan, Peter Gerner-Smidt, Marc W Allard, Sébastien Leuillet, Anett Winkler, Yinghua Xiao, Samuel Chaffron, Jos Van Der Vossen, Silin Tang, Mitsuru Katase, Peter McClure, Bon Kimura, Lay Ching Chai, John Chapman, and Kathie Grant
Food microbiology 2019 Jun 96-115
PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance.
Celine Nadon, Ivo Van Walle, Peter Gerner-Smidt, Josefina Campos, Isabel Chinen, Jeniffer Concepcion-Acevedo, Brent Gilpin, Anthony M Smith, Kai Man Kam, Enrique Perez, Eija Trees, Kristy Kubota, Johanna Takkinen, Eva Møller Nielsen, Heather Carleton, and
Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2017 Jun (23)
Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes.
Alexandra Moura, Alexis Criscuolo, Hannes Pouseele, Mylène M Maury, Alexandre Leclercq, Cheryl Tarr, Jonas T Björkman, Timothy Dallman, Aleisha Reimer, Vincent Enouf, Elise Larsonneur, Heather Carleton, Hélène Bracq-Dieye, Lee S Katz, Louis Jones, Marie Touchon, Mathieu Tourdjman, Matthew Walker, Steven Stroika, Thomas Cantinelli, Viviane Chenal-Francisque, Zuzana Kucerova, Eduardo P C Rocha, Celine Nadon, Kathie Grant, Eva M Nielsen, Bruno Pot, Peter Gerner-Smidt, Marc Lecuit, and Sylvain Brisse
Nature microbiology 2016 Oct 16185
Multiple-locus variable-number tandem repeat analysis for strain discrimination of non-O157 Shiga toxin-producing Escherichia coli.
Chris Timmons, Eija Trees, Efrain M Ribot, Peter Gerner-Smidt, Patti LaFon, Sung Im, and Li Maria Ma
Journal of microbiological methods 2016 Apr
Complete Genome Sequences of Two Shiga Toxin-Producing Escherichia coli Strains from Serotypes O119:H4 and O165:H25.
Rebecca L Lindsey, Kristen Knipe, Lori Rowe, Lisley Garcia-Toledo, Vladimir Loparev, Phalasy Juieng, Eija Trees, Nancy Strockbine, Devon Stripling, and Peter Gerner-Smidt
Genome announcements 2015 3(6)
Genome Sequences of 228 Shiga Toxin-Producing Escherichia coli Isolates and 12 Isolates Representing Other Diarrheagenic E. coli Pathotypes.
Eija Trees, Nancy Strockbine, Shankar Changayil, Satishkumar Ranganathan, Kun Zhao, Ryan Weil, Duncan MacCannell, Ashley Sabol, Amber Schmidtke, Haley Martin, Devon Stripling, Efrain M Ribot, and Peter Gerner-Smidt
Genome Announc 2014 2(4)
Draft Whole-Genome Sequences of Nine Non-O157 Shiga Toxin-Producing Escherichia coli Strains.
Rebecca L Lindsey, Eija Trees, Scott Sammons, Vladimir Loparev, Mike Frace, Nancy Strockbine, Ashley L Sabol, Evan Sowers, Devon Stripling, Haley Martin, Kristen Knipe, Lori Rowe, and Peter Gerner-Smidt
Genome Announc 2014 2(4)
Canonical Single Nucleotide Polymorphisms (SNPs) for High-Resolution Subtyping of Shiga-Toxin Producing Escherichia coli (STEC) O157:H7.
Sean M Griffing, Duncan R MacCannell, Amber J Schmidtke, Molly M Freeman, Eija Hyytiä-Trees, Peter Gerner-Smidt, Efrain M Ribot, and James L Bono
PLoS ONE 2015 (7) e0131967
Genomic characterization of Listeria monocytogenes strains involved in a multistate listeriosis outbreak associated with cantaloupe in US.
Pongpan Laksanalamai, Lavin A Joseph, Benjamin J Silk, Laurel S Burall, Cheryl L Tarr, Peter Gerner-Smidt, and Atin R Datta
PLoS ONE 2012 7(7) e42448
Characterization of toxigenic Vibrio cholerae from Haiti, 2010-2011.
Deborah Talkington, Cheryl Bopp, Cheryl Tarr, Michele B Parsons, Georges Dahourou, Molly Freeman, Kevin Joyce, Maryann Turnsek, Nancy Garrett, Michael Humphrys, Gerardo Gomez, Steven Stroika, Jacques Boncy, Benjamin Ochieng, Joseph Oundo, John Klena, Anthony Smith, Karen Keddy, and Peter Gerner-Smidt
Emerging Infect. Dis. 2011 Nov 17(11) 2122-9
Comparative genomics of Vibrio cholerae from Haiti, Asia, and Africa.
Aleisha R Reimer, Gary Van Domselaar, Steven Stroika, Matthew Walker, Heather Kent, Cheryl Tarr, Deborah Talkington, Lori Rowe, Melissa Olsen-Rasmussen, Michael Frace, Scott Sammons, Georges Anicet Dahourou, Jacques Boncy, Anthony M Smith, Philip Mabon, Aaron Petkau, Morag Graham, Matthew W Gilmour, Peter Gerner-Smidt, and
Emerging Infect. Dis. 2011 Nov 17(11) 2113-21
Subtyping Salmonella enterica serovar enteritidis isolates from different sources by using sequence typing based on virulence genes and clustered regularly interspaced short palindromic repeats (CRISPRs).
Fenyun Liu, Subhashinie Kariyawasam, Bhushan M Jayarao, Rodolphe Barrangou, Peter Gerner-Smidt, Efrain M Ribot, Stephen J Knabel, and Edward G Dudley
Appl. Environ. Microbiol. 2011 Jul 77(13) 4520-6
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