CDC-Authored Genomics and Precision Health Publications Database

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Last data update: May 22, 2023. (Total: 4299 publications since 2011)

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Records 1-30 (of 34 Records)

Query Trace: all>>Brian H Raphael[CDC Author]
Phylogenomic Comparison of Neisseria gonorrhoeae Causing Disseminated Gonococcal Infections and Uncomplicated Gonorrhea in Georgia, United States. Cartee JC , Joseph SJ , Weston E , Pham CD , Thomas JCth , Schlanger K , StCyr SB , Farley MM , Moore AE , Tunali AK , Cloud C , Raphael BH . Open Forum Infect Dis 2022 9 (7) ofac247
Characterization of a Neisseria gonorrhoeae Ciprofloxacin panel for an antimicrobial resistant Isolate Bank. Liu H , Tang K , Pham CD , Schmerer M , Kersh EN , Raphael BH . PLoS One 2022 17 (3) e0264149
Chlamydia trachomatis variants escaping detection in the Aptima Combo 2® assay in the United States. Katz SS , Danavall DC , Morris MR , Herrod BP , Dale SE , Nye MB , Kersh EN , Kirkcaldy RD , Raphael BH . Sex Transm Dis 2022 49 (6) 448-452
Global emergence and dissemination of Neisseria gonorrhoeae ST-9363 isolates with reduced susceptibility to azithromycin. Joseph SJ , ThomasIv JC , Schmerer MW , Cartee J , StCyr S , Schlanger K , Kersh EN , Raphael BH , Gernert KM . Genome Biol Evol 2021 14 (1)
Use of real-time PCR as an alternative to conventional genotyping methods for the laboratory detection of lymphogranuloma venereum (LGV). Woodson EN , Katz SS , Mosley SS , Danavall DC , Bowden KE , Chi KH , Raphael BH . Diagn Microbiol Infect Dis 2021 101 (4) 115532
Exploring and comparing the structure of sexual networks affected by Neisseria gonorrhoeae using sexual partner services investigation and genomic data. Town K , Learner ER , Chivukula VL , Mauk K , Reimche JL , Schmerer MW , Black J , Pathela P , Bhattacharyya S , Kerani RP , Gieseker KE , Fukuda A , Sankaran M , McNeil CJ , Spicknall IH , Raphael BH , StCyr SB , Bernstein K , Kersh EN , Kirkcaldy RD , Schlanger K , Gernert KM . Sex Transm Dis 2021 48 S131-S136
Phylogenomic analysis reveals persistence of gonococcal strains with reduced-susceptibility to extended-spectrum cephalosporins and mosaic penA-34. Thomas4th JC , Joseph SJ , Cartee JC , Pham CD , Schmerer MW , Schlanger K , StCyr SB , Kersh EN , Raphael BH . Nat Commun 2021 12 (1) 3801
Genomic analysis of the predominant strains and antimicrobial resistance determinants within 1479 Neisseria gonorrhoeae isolates from the U.S. Gonococcal Isolate Surveillance Project in 2018. Reimche JL , Chivukula VL , Schmerer MW , Joseph SJ , Pham CD , Schlanger K , StCyr SB , Weinstock HS , Raphael BH , Kersh EN , Gernert KM . Sex Transm Dis 2021 48 S78-S87
A community-driven resource for genomic epidemiology and antimicrobial resistance prediction of Neisseria gonorrhoeae at Pathogenwatch. Snchez-Bus L , Yeats CA , Taylor B , Goater RJ , Underwood A , Abudahab K , Argimn S , Ma KC , Mortimer TD , Golparian D , Cole MJ , Grad YH , Martin I , Raphael BH , Shafer WM , Town K , Wi T , Harris SR , Unemo M , Aanensen DM . Genome Med 2021 13 (1) 61
Whole-Genome Enrichment and Sequencing of Chlamydia trachomatis Directly from Patient Clinical Vaginal and Rectal Swabs. Bowden KE , Joseph SJ , Cartee JC , Ziklo N , Danavall D , Raphael BH , Read TD , Dean D . mSphere 2021 6 (2)
Atypical Mutation in Neisseria gonorrhoeae 23S rRNA Associated with High-Level Azithromycin Resistance. Pham CD , Nash E , Liu H , Schmerer MW , Sharpe S , Woods G , Roland B , Schlanger K , StCyr SB , Carlson J , Sellers K , Olsen A , Sanon R , Hardin H , Soge OO , Raphael BH , Kersh EN . Antimicrob Agents Chemother 2020 65 (2)
Azithromycin susceptibility of Neisseria gonorrhoeae in the USA in 2017: a genomic analysis of surveillance data. Gernert KM , Seby S , Schmerer MW , Thomas JCth , Pham CD , Cyr SS , Schlanger K , Weinstock H , Shafer WM , Raphael BH , Kersh EN . Lancet Microbe 2020 1 (4) e154-e164
Notes from the Field: Ongoing Cluster of Highly Related Disseminated Gonococcal Infections - Southwest Michigan, 2019. Nettleton WD , Kent JB , Macomber K , Brandt MG , Jones K , Ridpath AD , Raphael BH , Wells EV . MMWR Morb Mortal Wkly Rep 2020 69 (12) 353-354
Expanding US Laboratory Capacity for Neisseria gonorrhoeae Antimicrobial Susceptibility Testing and Whole Genome Sequencing through CDC's Antibiotic Resistance Laboratory Network. Kersh EN , Pham CD , Papp JR , Myers R , Steece R , Kubin G , Gautom R , Nash EE , Sharpe S , Gernert KM , Schmerer M , Raphael BH , Henning T , Gaynor AM , Soge O , Schlanger K , Kirkcaldy RD , StCyr SB , Torrone EA , Bernstein K , Weinstock H . J Clin Microbiol 2020 58 (4)
Culture of Clinical Specimens Reveals Extensive Diversity of Legionella pneumophila Strains in Arizona. Raphael BH , Huynh T , Brown E , Smith JC , Ruberto I , Getsinger L , White S , Winchell JM . mSphere 2019 4 (1)
Genomic heterogeneity differentiates clinical and environmental subgroups of Legionella pneumophila sequence type 1. Mercante JW , Caravas JA , Ishaq MK , Kozak-Muiznieks NA , Raphael BH , Winchell JM . PLoS One 2018 13 (10) e0206110
Comparative genome analysis reveals a complex population structure of Legionella pneumophila subspecies. Kozak-Muiznieks NA , Morrison SS , Mercante JW , Ishaq MK , Johnson T , Caravas J , Lucas CE , Brown E , Raphael BH , Winchell JM . Infect Genet Evol 2018 59 172-185
Legionnaires' Disease Outbreak Caused by Endemic Strain of Legionella pneumophila, New York, New York, USA, 2015. Lapierre Pascal, Nazarian Elizabeth, Zhu Yan, Wroblewski Danielle, Saylors Amy, Passaretti Teresa, Hughes Scott, Tran Anthony, Lin Ying, Kornblum John, Morrison Shatavia S, Mercante Jeffrey W, Fitzhenry Robert, Weiss Don, Raphael Brian H, Varma Jay K, Zucker Howard A, Rakeman Jennifer L, Musser Kimberlee A.Emerging infectious diseases 2017 Nov (11) 1784-1791 . Emerging infectious diseases 2017 Nov (11) 1784-1791
Characterization of Legionella Species from Watersheds in British Columbia, Canada. Peabody Michael A, Caravas Jason A, Morrison Shatavia S, Mercante Jeffrey W, Prystajecky Natalie A, Raphael Brian H, Brinkman Fiona S L.mSphere 0 (4) . mSphere (4)
Complete Genome Sequences of Legionella pneumophila subsp. fraseri Strains Detroit-1 and Dallas 1E. Raphael Brian H, Kozak-Muiznieks Natalia A, Morrison Shatavia S, Mercante Jeffrey W, Winchell Jonas M.Genome announcements 2017 Feb (5) . Genome announcements 2017 Feb (5)
Genomic Analysis Reveals Novel Diversity among the 1976 Philadelphia Legionnaires' Disease Outbreak Isolates and Additional ST36 Strains. Mercante Jeffrey W, Morrison Shatavia S, Desai Heta P, Raphael Brian H, Winchell Jonas M. PloS one 11(9) e0164074 . PloS one 11(9) e0164074
Complete Genome Sequences of the Historical Legionella pneumophila Strains OLDA and Pontiac. Mercante Jeffrey W, Morrison Shatavia S, Raphael Brian H, Winchell Jonas M.Genome announcements 2016 (4) . Genome announcements 2016 (4)
Complete Genome Sequences of Three Outbreak-Associated Legionella pneumophila Isolates. Morrison Shatavia S, Desai Heta P, Mercante Jeffrey W, Lapierre Pascal, Raphael Brian H, Musser Kimberlee, Winchell Jonas M.Genome announcements 2016 (4) . Genome announcements 2016 (4)
Three Genome Sequences of Legionella pneumophila subsp. pascullei Associated with Colonization of a Health Care Facility. Kozak-Muiznieks Natalia A, Morrison Shatavia S, Sammons Scott, Rowe Lori A, Sheth Mili, Frace Michael, Lucas Claressa E, Loparev Vladimir N, Raphael Brian H, Winchell Jonas M.Genome announcements 2016 (3) . Genome announcements 2016 (3)
Genomic resolution of outbreak-associated Legionella pneumophila serogroup 1 isolates from New York State. Raphael Brian H, Baker Deborah J, Nazarian Elizabeth, Lapierre Pascal, Bopp Dianna, Kozak-Muiznieks Natalia A, Morrison Shatavia S, Lucas Claressa E, Mercante Jeffrey W, Musser Kimberlee A, Winchell Jonas M.Applied and environmental microbiology 2016 Apr . Applied and environmental microbiology 2016 Apr
Characterizing the fecal microbiota of infants with botulism. Shirey T Brian, Dykes Janet K, Lúquez Carolina, Maslanka Susan E, Raphael Brian H.Microbiome 2015 (1) 54 . Microbiome 2015 (1) 54
A Novel Botulinum Toxin, Previously Reported as Serotype H, has a Hybrid Structure of Known Serotypes A and F that is Neutralized with Serotype A Antitoxin. Maslanka Susan E, Lúquez Carolina, Dykes Janet K, Tepp William H, Pier Christina L, Pellett Sabine, Raphael Brian H, Kalb Suzanne R, Barr John R, Rao Agam, Johnson Eric A.J. Infect. Dis. 2015 Jun 10. . J. Infect. Dis. 2015 Jun 10.
Genome-based discrimination between Group I Clostridium botulinum and Clostridium sporogenes strains: implications for bacterial taxonomy. Weigand Michael R, Pena-Gonzalez Angela, Shirey Timothy B, Broeker Robin G, Ishaq Maliha K, Konstantinidis Konstantinos T, Raphael Brian H. Appl. Environ. Microbiol. 2015 Jun 5. . Appl. Environ. Microbiol. 2015 Jun 5.
Historical and current perspectives on Clostridium botulinum diversity. Smith Theresa J, Hill Karen K, Raphael Brian H. Res. Microbiol. 2015 May 166(4) 290-302 . Res. Microbiol. 2015 May 166(4) 290-302
Identification and genetic characterization of Clostridium botulinum serotype A strains from commercially pasteurized carrot juice. Marshall Kristin M, Nowaczyk Louis, Raphael Brian H, Skinner Guy E, Rukma Reddy N. Food Microbiol. 2014 Dec 44149-55 . Food Microbiol. 2014 Dec 44149-55