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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB
CDC-Authored Genomics and Precision Health Publications Database
Last data update: Mar 03, 2021
. (Total: 3178 publications since 2011)
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all>>Robert F Breiman[CDC Author]
Carriage Dynamics of Pneumococcal Serotypes in Naturally Colonized Infants in a Rural African Setting During the First Year of Life.
Chrispin Chaguza
,
Madikay Senghore
,
Ebrima Bojang
,
Stephanie W Lo
,
Chinelo Ebruke
,
Rebecca A Gladstone
,
Peggy-Estelle Tientcheu
,
Rowan E Bancroft
,
Archibald Worwui
,
Ebenezer Foster-Nyarko
,
Fatima Ceesay
,
Catherine Okoi
,
Lesley McGee
,
Keith P Klugman
,
Robert F Breiman
,
Michael R Barer
,
Richard A Adegbola
,
Martin Antonio
,
Stephen D Bentley
, and
Brenda A Kwambana-Adams
Frontiers in pediatrics 2020 8587730
Similar articles in PubMed
DOI:
10.3389/fped.2020.587730
Characteristics of Salmonella recovered from stools of children enrolled in the Global Enteric Multicenter Study.
Irene N Kasumba
,
Caisey V Pulford
,
Blanca M Perez-Sepulveda
,
Sunil Sen
,
Nurulla Sayed
,
Jasnehta Permala-Booth
,
Sofie Livio
,
Darren Heavens
,
Ross Low
,
Neil Hall
,
Anna Roose
,
Helen Powell
,
Tamer Farag
,
Sandra Panchalingham
,
Lynette Berkeley
,
Dilruba Nasrin
,
William C Blackwelder
,
Yukun Wu
,
Boubou Tamboura
,
Doh Sanogo
,
Uma Onwuchekwa
,
Samba O Sow
,
John B Ochieng
,
Richard Omore
,
Joseph O Oundo
,
Robert F Breiman
,
Eric D Mintz
,
Ciara E O'Reilly
,
Martin Antonio
,
Debasish Saha
,
M Jahangir Hossain
,
Inacio Mandomando
,
Quique Bassat
,
Pedro L Alonso
,
T Ramamurthy
,
Dipika Sur
,
Shahida Qureshi
,
Anita K M Zaidi
,
Anowar Hossain
,
Abu S G Faruque
,
James P Nataro
,
Karen L Kotloff
,
Myron M Levine
,
Jay C D Hinton
, and
Sharon M Tennant
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2021 Jan
Similar articles in PubMed
DOI:
10.1093/cid/ciab051
Multiple Introductions and Predominance of Rotavirus Group A Genotype G3P[8] in Kilifi, Coastal Kenya, 4 Years after Nationwide Vaccine Introduction.
Mike J Mwanga
,
Jennifer R Verani
,
Richard Omore
,
Jacqueline E Tate
,
Umesh D Parashar
,
Nickson Murunga
,
Elijah Gicheru
,
Robert F Breiman
,
D James Nokes
, and
Charles N Agoti
Pathogens (Basel, Switzerland) 2020 Nov 9(12)
Similar articles in PubMed
DOI:
10.3390/pathogens9120981
Bacterial genome-wide association study of hyper-virulent pneumococcal serotype 1 identifies genetic variation associated with neurotropism.
Chrispin Chaguza
,
Marie Yang
,
Jennifer E Cornick
,
Mignon du Plessis
,
Rebecca A Gladstone
,
Brenda A Kwambana-Adams
,
Stephanie W Lo
,
Chinelo Ebruke
,
Gerry Tonkin-Hill
,
Chikondi Peno
,
Madikay Senghore
,
Stephen K Obaro
,
Sani Ousmane
,
Gerd Pluschke
,
Jean-Marc Collard
,
Betuel Sigaùque
,
Neil French
,
Keith P Klugman
,
Robert S Heyderman
,
Lesley McGee
,
Martin Antonio
,
Robert F Breiman
,
Anne von Gottberg
,
Dean B Everett
,
Aras Kadioglu
, and
Stephen D Bentley
Communications biology 2020 Oct 3(1) 559
Similar articles in PubMed
DOI:
10.1038/s42003-020-01290-9
Rotavirus group A genotype circulation patterns across Kenya before and after nationwide vaccine introduction, 2010-2018.
Mike J Mwanga
,
Betty E Owor
,
John B Ochieng
,
Mwanajuma H Ngama
,
Billy Ogwel
,
Clayton Onyango
,
Jane Juma
,
Regina Njeru
,
Elijah Gicheru
,
Grieven P Otieno
,
Sammy Khagayi
,
Charles N Agoti
,
Godfrey M Bigogo
,
Richard Omore
,
O Yaw Addo
,
Seheri Mapaseka
,
Jacqueline E Tate
,
Umesh D Parashar
,
Elizabeth Hunsperger
,
Jennifer R Verani
,
Robert F Breiman
, and
D James Nokes
BMC infectious diseases 2020 Jul 20(1) 504
Similar articles in PubMed
DOI:
10.1186/s12879-020-05230-0
Within-host microevolution of Streptococcus pneumoniae is rapid and adaptive during natural colonisation.
Chrispin Chaguza
,
Madikay Senghore
,
Ebrima Bojang
,
Rebecca A Gladstone
,
Stephanie W Lo
,
Peggy-Estelle Tientcheu
,
Rowan E Bancroft
,
Archibald Worwui
,
Ebenezer Foster-Nyarko
,
Fatima Ceesay
,
Catherine Okoi
,
Lesley McGee
,
Keith P Klugman
,
Robert F Breiman
,
Michael R Barer
,
Richard A Adegbola
,
Martin Antonio
,
Stephen D Bentley
, and
Brenda A Kwambana-Adams
Nature communications 2020 Jul 11(1) 3442
Similar articles in PubMed
DOI:
10.1038/s41467-020-17327-w
A New Pneumococcal Capsule Type, 10D, is the 100th Serotype and Has a Large cps Fragment from an Oral Streptococcus.
Feroze Ganaie
,
Jamil S Saad
,
Lesley McGee
,
Andries J van Tonder
,
Stephen D Bentley
,
Stephanie W Lo
,
Rebecca A Gladstone
,
Paul Turner
,
Jeremy D Keenan
,
Robert F Breiman
, and
Moon H Nahm
mBio 2020 May (3)
Similar articles in PubMed
DOI:
10.1128/mBio.00937-20
Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates.
Rebecca A Gladstone
,
Stephanie W Lo
,
Richard Goater
,
Corin Yeats
,
Ben Taylor
,
James Hadfield
,
John A Lees
,
Nicholas J Croucher
,
Andries J van Tonder
,
Leon J Bentley
,
Fu Xiang Quah
,
Anne J Blaschke
,
Nicole L Pershing
,
Carrie L Byington
,
Veeraraghavan Balaji
,
Waleria Hryniewicz
,
Betuel Sigauque
,
K L Ravikumar
,
Samanta Cristine Grassi Almeida
,
Theresa J Ochoa
,
Pak Leung Ho
,
Mignon du Plessis
,
Kedibone M Ndlangisa
,
Jennifer E Cornick
,
Brenda Kwambana-Adams
,
Rachel Benisty
,
Susan A Nzenze
,
Shabir A Madhi
,
Paulina A Hawkins
,
Andrew J Pollard
,
Dean B Everett
,
Martin Antonio
,
Ron Dagan
,
Keith P Klugman
,
Anne von Gottberg
,
Benjamin J Metcalf
,
Yuan Li
,
Bernard W Beall
,
Lesley McGee
,
Robert F Breiman
,
David M Aanensen
,
Stephen D Bentley
, and
The Global Pneumococcal Sequencing Consortium
Microbial genomics 2020 Apr
Similar articles in PubMed
DOI:
10.1099/mgen.0.000357
A mosaic tetracycline resistance gene tet(S/M) detected in an MDR pneumococcal CC230 lineage that underwent capsular switching in South Africa.
Stephanie W Lo
,
Rebecca A Gladstone
,
Andries J van Tonder
,
Mignon du Plessis
,
Jennifer E Cornick
,
Paulina A Hawkins
,
Shabir A Madhi
,
Susan A Nzenze
,
Rama Kandasamy
,
K L Ravikumar
,
Naima Elmdaghri
,
Brenda Kwambana-Adams
,
Samanta Cristine Grassi Almeida
,
Anna Skoczynska
,
Ekaterina Egorova
,
Leonid Titov
,
Samir K Saha
,
Metka Paragi
,
Dean B Everett
,
Martin Antonio
,
Keith P Klugman
,
Yuan Li
,
Benjamin J Metcalf
,
Bernard Beall
,
Lesley McGee
,
Robert F Breiman
,
Stephen D Bentley
,
Anne von Gottberg
, and
The Journal of antimicrobial chemotherapy 2019 Dec
Similar articles in PubMed
DOI:
10.1093/jac/dkz477
Development and Implementation of Multiplex TaqMan Array Cards for Specimen Testing at Child Health and Mortality Prevention Surveillance Site Laboratories.
Maureen H Diaz
,
Jessica L Waller
,
M Jordan Theodore
,
Nishi Patel
,
Bernard J Wolff
,
Alvaro J Benitez
,
Timothy Morris
,
Pratima L Raghunathan
,
Robert F Breiman
,
Cynthia G Whitney
,
Dianna M Blau
, and
Jonas M Winchell
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Oct 69(Supplement_4) S311-S321
Similar articles in PubMed
DOI:
10.1093/cid/ciz571
Pneumococcal lineages associated with serotype replacement and antibiotic resistance in childhood invasive pneumococcal disease in the post-PCV13 era: an international whole-genome sequencing study.
Stephanie W Lo
,
Rebecca A Gladstone
,
Andries J van Tonder
,
John A Lees
,
Mignon du Plessis
,
Rachel Benisty
,
Noga Givon-Lavi
,
Paulina A Hawkins
,
Jennifer E Cornick
,
Brenda Kwambana-Adams
,
Pierra Y Law
,
Pak Leung Ho
,
Martin Antonio
,
Dean B Everett
,
Ron Dagan
,
Anne von Gottberg
,
Keith P Klugman
,
Lesley McGee
,
Robert F Breiman
,
Stephen D Bentley
, and
The Lancet. Infectious diseases 2019 Jun
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DOI:
10.1016/S1473-3099(19)30297-X
Putative novel cps loci in a large global collection of pneumococci.
Andries J van Tonder
,
Rebecca A Gladstone
,
Stephanie W Lo
,
Moon H Nahm
,
Mignon du Plessis
,
Jennifer Cornick
,
Brenda Kwambana-Adams
,
Shabir A Madhi
,
Paulina A Hawkins
,
Rachel Benisty
,
Ron Dagan
,
Dean Everett
,
Martin Antonio
,
Keith P Klugman
,
Anne von Gottberg
,
Robert F Breiman
,
Lesley McGee
,
Stephen D Bentley
, and
Microbial genomics 2019 5(7)
Similar articles in PubMed
DOI:
10.1099/mgen.0.000274
Early signals of vaccine driven perturbation seen in pneumococcal carriage population genomic data.
Chrispin Chaguza
,
Ellen Heinsbroek
,
Rebecca A Gladstone
, Terence Tafatatha,
Maaike Alaerts
,
Chikondi Peno
,
Jennifer E Cornick
,
Patrick Musicha
,
Naor Bar-Zeev
,
Arox Kamng'ona
,
Aras Kadioglu
,
Lesley McGee
,
William P Hanage
,
Robert F Breiman
,
Robert S Heyderman
,
Neil French
,
Dean B Everett
, and
Stephen D Bentley
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 May
Similar articles in PubMed
DOI:
10.1093/cid/ciz404
International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact.
Rebecca A Gladstone
,
Stephanie W Lo
,
John A Lees
,
Nicholas J Croucher
,
Andries J van Tonder
,
Jukka Corander
,
Andrew J Page
,
Pekka Marttinen
,
Leon J Bentley
,
Theresa J Ochoa
,
Pak Leung Ho
,
Mignon du Plessis
,
Jennifer E Cornick
,
Brenda Kwambana-Adams
,
Rachel Benisty
,
Susan A Nzenze
,
Shabir A Madhi
,
Paulina A Hawkins
,
Dean B Everett
,
Martin Antonio
,
Ron Dagan
,
Keith P Klugman
,
Anne von Gottberg
,
Lesley McGee
,
Robert F Breiman
,
Stephen D Bentley
, and
EBioMedicine 2019 Apr
Similar articles in PubMed
DOI:
10.1016/j.ebiom.2019.04.021
Colonization factors among enterotoxigenic Escherichia coli isolates from children with moderate-to-severe diarrhea and from matched controls in the Global Enteric Multicenter Study (GEMS).
Roberto M Vidal
,
Khitam Muhsen
,
Sharon M Tennant
,
Ann-Mari Svennerholm
,
Samba O Sow
,
Dipika Sur
,
Anita K M Zaidi
,
Abu S G Faruque
,
Debasish Saha
,
Richard Adegbola
,
M Jahangir Hossain
,
Pedro L Alonso
,
Robert F Breiman
,
Quique Bassat
,
Boubou Tamboura
,
Doh Sanogo
,
Uma Onwuchekwa
,
Byomkesh Manna
,
Thandavarayan Ramamurthy
,
Suman Kanungo
,
Shahnawaz Ahmed
,
Shahida Qureshi
,
Farheen Quadri
,
Anowar Hossain
,
Sumon K Das
,
Martin Antonio
,
Inacio Mandomando
,
Tacilta Nhampossa
,
Sozinho Acácio
,
Richard Omore
,
John B Ochieng
,
Joseph O Oundo
,
Eric D Mintz
,
Ciara E O'Reilly
,
Lynette Y Berkeley
,
Sofie Livio
,
Sandra Panchalingam
,
Dilruba Nasrin
,
Tamer H Farag
,
Yukun Wu
,
Halvor Sommerfelt
,
Roy M Robins-Browne
,
Felipe Del Canto
,
Tracy H Hazen
,
David A Rasko
,
Karen L Kotloff
,
James P Nataro
, and
Myron M Levine
PLoS neglected tropical diseases 2019 Jan 13(1) e0007037
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DOI:
10.1371/journal.pntd.0007037
The phylogeography and incidence of multi-drug resistant typhoid fever in sub-Saharan Africa.
Se Eun Park
,
Duy Thanh Pham
,
Christine Boinett
,
Vanessa K Wong
,
Gi Deok Pak
,
Ursula Panzner
,
Ligia Maria Cruz Espinoza
,
Vera von Kalckreuth
,
Justin Im
,
Heidi Schütt-Gerowitt
,
John A Crump
,
Robert F Breiman
,
Yaw Adu-Sarkodie
,
Ellis Owusu-Dabo
,
Raphaël Rakotozandrindrainy
,
Abdramane Bassiahi Soura
,
Abraham Aseffa
,
Nagla Gasmelseed
,
Karen H Keddy
,
Jürgen May
,
Amy Gassama Sow
,
Peter Aaby
,
Holly M Biggs
,
Julian T Hertz
,
Joel M Montgomery
,
Leonard Cosmas
,
Beatrice Olack
,
Barry Fields
,
Nimako Sarpong
,
Tsiriniaina Jean Luco Razafindrabe
,
Tiana Mirana Raminosoa
,
Leon Parfait Kabore
,
Emmanuel Sampo
,
Mekonnen Teferi
,
Biruk Yeshitela
,
Muna Ahmed El Tayeb
,
Arvinda Sooka
,
Christian G Meyer
,
Ralf Krumkamp
,
Denise Myriam Dekker
,
Anna Jaeger
,
Sven Poppert
,
Adama Tall
,
Aissatou Niang
,
Morten Bjerregaard-Andersen
,
Sandra Valborg Løfberg
,
Hye Jin Seo
,
Hyon Jin Jeon
,
Jessica Fung Deerin
,
Jinkyung Park
,
Frank Konings
,
Mohammad Ali
,
John D Clemens
,
Peter Hughes
,
Juliet Nsimire Sendagala
,
Tobias Vudriko
,
Robert Downing
,
Usman N Ikumapayi
,
Grant A Mackenzie
,
Stephen Obaro
,
Silvia Argimon
,
David M Aanensen
,
Andrew Page
,
Jacqueline A Keane
,
Sebastian Duchene
,
Zoe Dyson
,
Kathryn E Holt
,
Gordon Dougan
,
Florian Marks
, and
Stephen Baker
Nature communications 2018 Nov (1) 5094
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DOI:
10.1038/s41467-018-07370-z
Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci.
Taj Azarian
,
Patrick K Mitchell
,
Maria Georgieva
,
Claudette M Thompson
,
Amel Ghouila
,
Andrew J Pollard
,
Anne von Gottberg
,
Mignon du Plessis
,
Martin Antonio
,
Brenda A Kwambana-Adams
,
Stuart C Clarke
,
Dean Everett
,
Jennifer Cornick
,
Ewa Sadowy
,
Waleria Hryniewicz
,
Anna Skoczynska
,
Jennifer C Moïsi
,
Lesley McGee
,
Bernard Beall
,
Benjamin J Metcalf
,
Robert F Breiman
,
P L Ho
,
Raymond Reid
,
Katherine L O'Brien
,
Rebecca A Gladstone
,
Stephen D Bentley
, and
William P Hanage
PLoS pathogens 2018 Nov 14(11) e1007438
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10.1371/journal.ppat.1007438
Reassessment of High Prevalence Human Adenovirus Detections Among Residents of Two Refugee Centers in Kenya Under Surveillance for Acute Respiratory Infections.
Xinwei Wu
,
Xiaoyan Lu
,
Eileen Schneider
, Jamal A Ahmed,
M Kariuki Njenga
,
Robert F Breiman
,
Rachel B Eidex
, and
Dean D Erdman
Journal of medical virology 2018 Sep
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10.1002/jmv.25320
Global distribution of invasive serotype 35D Streptococcus pneumoniae post-PCV13 introduction.
Stephanie W Lo
,
Rebecca A Gladstone
,
Andries J van Tonder
,
Paulina A Hawkins
,
Brenda Kwambana-Adams
,
Jennifer E Cornick
,
Shabir A Madhi
,
Susan A Nzenze
,
Mignon du Plessis
,
Rama Kandasamy
,
Philip E Carter
,
Özgen Köseoglu Eser
,
Pak Leung Ho
,
Naima Elmdaghri
,
Sadia Shakoor
,
Stuart C Clarke
,
Martin Antonio
,
Dean B Everett
,
Anne von Gottberg
,
Keith P Klugman
,
Lesley McGee
,
Robert F Breiman
,
Stephen D Bentley
, and
Journal of clinical microbiology 2018 May
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10.1128/JCM.00228-18
Antimicrobial resistance determinants and susceptibility profiles of pneumococcal isolates recovered in Trinidad and Tobago.
Paulina A Hawkins
,
Patrick E Akpaka
,
Michele Nurse-Lucas
,
Rebecca Gladstone
,
Stephen D Bentley
,
Robert F Breiman
,
Lesley McGee
, and
William H Swanston
Journal of global antimicrobial resistance 2017 Aug
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10.1016/j.jgar.2017.08.004
Key features of invasive pneumococcal isolates recovered in Lima, Peru determined through whole genome sequencing.
Paulina Hawkins
,
Erik Mercado
,
Sopio Chochua
,
Maria E Castillo
,
Isabel Reyes
,
Eduardo Chaparro
,
Rebecca Gladstone
,
Stephen D Bentley
,
Robert F Breiman
,
Benjamin J Metcalf
,
Bernard Beall
,
Theresa J Ochoa
, and
Lesley McGee
International journal of medical microbiology : IJMM 2017 Jul
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10.1016/j.ijmm.2017.07.008
Population genetic structure, antibiotic resistance, capsule switching and evolution of invasive pneumococci before conjugate vaccination in Malawi.
Chrispin Chaguza
,
Jennifer E Cornick
,
Cheryl P Andam
,
Rebecca A Gladstone
,
Maaike Alaerts
,
Patrick Musicha
,
Chikondi Peno
,
Naor Bar-Zeev
,
Arox W Kamng'ona
,
Anmol M Kiran
,
Chisomo L Msefula
,
Lesley McGee
,
Robert F Breiman
,
Aras Kadioglu
,
Neil French
,
Robert S Heyderman
,
William P Hanage
,
Stephen D Bentley
, and
Dean B Everett
Vaccine 2017 Jul
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10.1016/j.vaccine.2017.07.009
Use of quantitative molecular diagnostic methods to identify causes of diarrhoea in children: a reanalysis of the GEMS case-control study.
Jie Liu
,
James A Platts-Mills
,
Jane Juma
,
Furqan Kabir
,
Joseph Nkeze
,
Catherine Okoi
,
Darwin J Operario
,
Jashim Uddin
,
Shahnawaz Ahmed
,
Pedro L Alonso
,
Martin Antonio
,
Stephen M Becker
,
William C Blackwelder
,
Robert F Breiman
,
Abu S G Faruque
,
Barry Fields
,
Jean Gratz
,
Rashidul Haque
,
Anowar Hossain
,
M Jahangir Hossain
,
Sheikh Jarju
,
Farah Qamar
,
Najeeha Talat Iqbal
,
Brenda Kwambana
,
Inacio Mandomando
,
Timothy L McMurry
,
Caroline Ochieng
,
John B Ochieng
,
Melvin Ochieng
,
Clayton Onyango
,
Sandra Panchalingam
,
Adil Kalam
,
Fatima Aziz
,
Shahida Qureshi
,
Thandavarayan Ramamurthy
,
James H Roberts
,
Debasish Saha
,
Samba O Sow
,
Suzanne E Stroup
,
Dipika Sur
,
Boubou Tamboura
,
Mami Taniuchi
,
Sharon M Tennant
,
Deanna Toema
,
Yukun Wu
,
Anita Zaidi
,
James P Nataro
,
Karen L Kotloff
,
Myron M Levine
, and
Eric R Houpt
Lancet (London, England) 2016 Sep 388(10051) 1291-301
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10.1016/S0140-6736(16)31529-X
Molecular Surveillance Identifies Multiple Transmissions of Typhoid in West Africa.
,
Vanessa K Wong
,
Kathryn E Holt
,
Chinyere Okoro
,
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