CDC-Authored Genomics and Precision Health Publications Database
Last data update: Aug 05, 2020. (Total: 2888 publications since 2011)
| Query Trace: all>>Robert F Breiman[CDC Author] |
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| Rotavirus group A genotype circulation patterns across Kenya before and after nationwide vaccine introduction, 2010-2018. Mike J Mwanga, Betty E Owor, John B Ochieng, Mwanajuma H Ngama, Billy Ogwel, Clayton Onyango, Jane Juma, Regina Njeru, Elijah Gicheru, Grieven P Otieno, Sammy Khagayi, Charles N Agoti, Godfrey M Bigogo, Richard Omore, O Yaw Addo, Seheri Mapaseka, Jacqueline E Tate, Umesh D Parashar, Elizabeth Hunsperger, Jennifer R Verani, Robert F Breiman, and D James Nokes BMC infectious diseases 2020 Jul 20(1) 504 |
| Within-host microevolution of Streptococcus pneumoniae is rapid and adaptive during natural colonisation. Chrispin Chaguza, Madikay Senghore, Ebrima Bojang, Rebecca A Gladstone, Stephanie W Lo, Peggy-Estelle Tientcheu, Rowan E Bancroft, Archibald Worwui, Ebenezer Foster-Nyarko, Fatima Ceesay, Catherine Okoi, Lesley McGee, Keith P Klugman, Robert F Breiman, Michael R Barer, Richard A Adegbola, Martin Antonio, Stephen D Bentley, and Brenda A Kwambana-Adams Nature communications 2020 Jul 11(1) 3442 |
| A New Pneumococcal Capsule Type, 10D, is the 100th Serotype and Has a Large cps Fragment from an Oral Streptococcus. Feroze Ganaie, Jamil S Saad, Lesley McGee, Andries J van Tonder, Stephen D Bentley, Stephanie W Lo, Rebecca A Gladstone, Paul Turner, Jeremy D Keenan, Robert F Breiman, and Moon H Nahm mBio 2020 May (3) |
| Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates. Rebecca A Gladstone, Stephanie W Lo, Richard Goater, Corin Yeats, Ben Taylor, James Hadfield, John A Lees, Nicholas J Croucher, Andries J van Tonder, Leon J Bentley, Fu Xiang Quah, Anne J Blaschke, Nicole L Pershing, Carrie L Byington, Veeraraghavan Balaji, Waleria Hryniewicz, Betuel Sigauque, K L Ravikumar, Samanta Cristine Grassi Almeida, Theresa J Ochoa, Pak Leung Ho, Mignon du Plessis, Kedibone M Ndlangisa, Jennifer E Cornick, Brenda Kwambana-Adams, Rachel Benisty, Susan A Nzenze, Shabir A Madhi, Paulina A Hawkins, Andrew J Pollard, Dean B Everett, Martin Antonio, Ron Dagan, Keith P Klugman, Anne von Gottberg, Benjamin J Metcalf, Yuan Li, Bernard W Beall, Lesley McGee, Robert F Breiman, David M Aanensen, Stephen D Bentley, and The Global Pneumococcal Sequencing Consortium Microbial genomics 2020 Apr |
| A mosaic tetracycline resistance gene tet(S/M) detected in an MDR pneumococcal CC230 lineage that underwent capsular switching in South Africa. Stephanie W Lo, Rebecca A Gladstone, Andries J van Tonder, Mignon du Plessis, Jennifer E Cornick, Paulina A Hawkins, Shabir A Madhi, Susan A Nzenze, Rama Kandasamy, K L Ravikumar, Naima Elmdaghri, Brenda Kwambana-Adams, Samanta Cristine Grassi Almeida, Anna Skoczynska, Ekaterina Egorova, Leonid Titov, Samir K Saha, Metka Paragi, Dean B Everett, Martin Antonio, Keith P Klugman, Yuan Li, Benjamin J Metcalf, Bernard Beall, Lesley McGee, Robert F Breiman, Stephen D Bentley, Anne von Gottberg, and The Journal of antimicrobial chemotherapy 2019 Dec |
| Development and Implementation of Multiplex TaqMan Array Cards for Specimen Testing at Child Health and Mortality Prevention Surveillance Site Laboratories. Maureen H Diaz, Jessica L Waller, M Jordan Theodore, Nishi Patel, Bernard J Wolff, Alvaro J Benitez, Timothy Morris, Pratima L Raghunathan, Robert F Breiman, Cynthia G Whitney, Dianna M Blau, and Jonas M Winchell Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Oct 69(Supplement_4) S311-S321 |
| Pneumococcal lineages associated with serotype replacement and antibiotic resistance in childhood invasive pneumococcal disease in the post-PCV13 era: an international whole-genome sequencing study. Stephanie W Lo, Rebecca A Gladstone, Andries J van Tonder, John A Lees, Mignon du Plessis, Rachel Benisty, Noga Givon-Lavi, Paulina A Hawkins, Jennifer E Cornick, Brenda Kwambana-Adams, Pierra Y Law, Pak Leung Ho, Martin Antonio, Dean B Everett, Ron Dagan, Anne von Gottberg, Keith P Klugman, Lesley McGee, Robert F Breiman, Stephen D Bentley, and The Lancet. Infectious diseases 2019 Jun |
| Putative novel cps loci in a large global collection of pneumococci. Andries J van Tonder, Rebecca A Gladstone, Stephanie W Lo, Moon H Nahm, Mignon du Plessis, Jennifer Cornick, Brenda Kwambana-Adams, Shabir A Madhi, Paulina A Hawkins, Rachel Benisty, Ron Dagan, Dean Everett, Martin Antonio, Keith P Klugman, Anne von Gottberg, Robert F Breiman, Lesley McGee, Stephen D Bentley, and Microbial genomics 2019 5(7) |
| Early signals of vaccine driven perturbation seen in pneumococcal carriage population genomic data. Chrispin Chaguza, Ellen Heinsbroek, Rebecca A Gladstone, Terence Tafatatha, Maaike Alaerts, Chikondi Peno, Jennifer E Cornick, Patrick Musicha, Naor Bar-Zeev, Arox Kamng'ona, Aras Kadioglu, Lesley McGee, William P Hanage, Robert F Breiman, Robert S Heyderman, Neil French, Dean B Everett, and Stephen D Bentley Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 May |
| International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact. Rebecca A Gladstone, Stephanie W Lo, John A Lees, Nicholas J Croucher, Andries J van Tonder, Jukka Corander, Andrew J Page, Pekka Marttinen, Leon J Bentley, Theresa J Ochoa, Pak Leung Ho, Mignon du Plessis, Jennifer E Cornick, Brenda Kwambana-Adams, Rachel Benisty, Susan A Nzenze, Shabir A Madhi, Paulina A Hawkins, Dean B Everett, Martin Antonio, Ron Dagan, Keith P Klugman, Anne von Gottberg, Lesley McGee, Robert F Breiman, Stephen D Bentley, and EBioMedicine 2019 Apr |
| Colonization factors among enterotoxigenic Escherichia coli isolates from children with moderate-to-severe diarrhea and from matched controls in the Global Enteric Multicenter Study (GEMS). Roberto M Vidal, Khitam Muhsen, Sharon M Tennant, Ann-Mari Svennerholm, Samba O Sow, Dipika Sur, Anita K M Zaidi, Abu S G Faruque, Debasish Saha, Richard Adegbola, M Jahangir Hossain, Pedro L Alonso, Robert F Breiman, Quique Bassat, Boubou Tamboura, Doh Sanogo, Uma Onwuchekwa, Byomkesh Manna, Thandavarayan Ramamurthy, Suman Kanungo, Shahnawaz Ahmed, Shahida Qureshi, Farheen Quadri, Anowar Hossain, Sumon K Das, Martin Antonio, Inacio Mandomando, Tacilta Nhampossa, Sozinho Acácio, Richard Omore, John B Ochieng, Joseph O Oundo, Eric D Mintz, Ciara E O'Reilly, Lynette Y Berkeley, Sofie Livio, Sandra Panchalingam, Dilruba Nasrin, Tamer H Farag, Yukun Wu, Halvor Sommerfelt, Roy M Robins-Browne, Felipe Del Canto, Tracy H Hazen, David A Rasko, Karen L Kotloff, James P Nataro, and Myron M Levine PLoS neglected tropical diseases 2019 Jan 13(1) e0007037 |
| The phylogeography and incidence of multi-drug resistant typhoid fever in sub-Saharan Africa. Se Eun Park, Duy Thanh Pham, Christine Boinett, Vanessa K Wong, Gi Deok Pak, Ursula Panzner, Ligia Maria Cruz Espinoza, Vera von Kalckreuth, Justin Im, Heidi Schütt-Gerowitt, John A Crump, Robert F Breiman, Yaw Adu-Sarkodie, Ellis Owusu-Dabo, Raphaël Rakotozandrindrainy, Abdramane Bassiahi Soura, Abraham Aseffa, Nagla Gasmelseed, Karen H Keddy, Jürgen May, Amy Gassama Sow, Peter Aaby, Holly M Biggs, Julian T Hertz, Joel M Montgomery, Leonard Cosmas, Beatrice Olack, Barry Fields, Nimako Sarpong, Tsiriniaina Jean Luco Razafindrabe, Tiana Mirana Raminosoa, Leon Parfait Kabore, Emmanuel Sampo, Mekonnen Teferi, Biruk Yeshitela, Muna Ahmed El Tayeb, Arvinda Sooka, Christian G Meyer, Ralf Krumkamp, Denise Myriam Dekker, Anna Jaeger, Sven Poppert, Adama Tall, Aissatou Niang, Morten Bjerregaard-Andersen, Sandra Valborg Løfberg, Hye Jin Seo, Hyon Jin Jeon, Jessica Fung Deerin, Jinkyung Park, Frank Konings, Mohammad Ali, John D Clemens, Peter Hughes, Juliet Nsimire Sendagala, Tobias Vudriko, Robert Downing, Usman N Ikumapayi, Grant A Mackenzie, Stephen Obaro, Silvia Argimon, David M Aanensen, Andrew Page, Jacqueline A Keane, Sebastian Duchene, Zoe Dyson, Kathryn E Holt, Gordon Dougan, Florian Marks, and Stephen Baker Nature communications 2018 Nov (1) 5094 |
| Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci. Taj Azarian, Patrick K Mitchell, Maria Georgieva, Claudette M Thompson, Amel Ghouila, Andrew J Pollard, Anne von Gottberg, Mignon du Plessis, Martin Antonio, Brenda A Kwambana-Adams, Stuart C Clarke, Dean Everett, Jennifer Cornick, Ewa Sadowy, Waleria Hryniewicz, Anna Skoczynska, Jennifer C Moïsi, Lesley McGee, Bernard Beall, Benjamin J Metcalf, Robert F Breiman, P L Ho, Raymond Reid, Katherine L O'Brien, Rebecca A Gladstone, Stephen D Bentley, and William P Hanage PLoS pathogens 2018 Nov 14(11) e1007438 |
| Reassessment of High Prevalence Human Adenovirus Detections Among Residents of Two Refugee Centers in Kenya Under Surveillance for Acute Respiratory Infections. Xinwei Wu, Xiaoyan Lu, Eileen Schneider, Jamal A Ahmed, M Kariuki Njenga, Robert F Breiman, Rachel B Eidex, and Dean D Erdman Journal of medical virology 2018 Sep |
| Global distribution of invasive serotype 35D Streptococcus pneumoniae post-PCV13 introduction. Stephanie W Lo, Rebecca A Gladstone, Andries J van Tonder, Paulina A Hawkins, Brenda Kwambana-Adams, Jennifer E Cornick, Shabir A Madhi, Susan A Nzenze, Mignon du Plessis, Rama Kandasamy, Philip E Carter, Özgen Köseoglu Eser, Pak Leung Ho, Naima Elmdaghri, Sadia Shakoor, Stuart C Clarke, Martin Antonio, Dean B Everett, Anne von Gottberg, Keith P Klugman, Lesley McGee, Robert F Breiman, Stephen D Bentley, and Journal of clinical microbiology 2018 May |
| Antimicrobial resistance determinants and susceptibility profiles of pneumococcal isolates recovered in Trinidad and Tobago. Paulina A Hawkins, Patrick E Akpaka, Michele Nurse-Lucas, Rebecca Gladstone, Stephen D Bentley, Robert F Breiman, Lesley McGee, and William H Swanston Journal of global antimicrobial resistance 2017 Aug |
| Key features of invasive pneumococcal isolates recovered in Lima, Peru determined through whole genome sequencing. Paulina Hawkins, Erik Mercado, Sopio Chochua, Maria E Castillo, Isabel Reyes, Eduardo Chaparro, Rebecca Gladstone, Stephen D Bentley, Robert F Breiman, Benjamin J Metcalf, Bernard Beall, Theresa J Ochoa, and Lesley McGee International journal of medical microbiology : IJMM 2017 Jul |
| Population genetic structure, antibiotic resistance, capsule switching and evolution of invasive pneumococci before conjugate vaccination in Malawi. Chrispin Chaguza, Jennifer E Cornick, Cheryl P Andam, Rebecca A Gladstone, Maaike Alaerts, Patrick Musicha, Chikondi Peno, Naor Bar-Zeev, Arox W Kamng'ona, Anmol M Kiran, Chisomo L Msefula, Lesley McGee, Robert F Breiman, Aras Kadioglu, Neil French, Robert S Heyderman, William P Hanage, Stephen D Bentley, and Dean B Everett Vaccine 2017 Jul |
| Use of quantitative molecular diagnostic methods to identify causes of diarrhoea in children: a reanalysis of the GEMS case-control study. Jie Liu, James A Platts-Mills, Jane Juma, Furqan Kabir, Joseph Nkeze, Catherine Okoi, Darwin J Operario, Jashim Uddin, Shahnawaz Ahmed, Pedro L Alonso, Martin Antonio, Stephen M Becker, William C Blackwelder, Robert F Breiman, Abu S G Faruque, Barry Fields, Jean Gratz, Rashidul Haque, Anowar Hossain, M Jahangir Hossain, Sheikh Jarju, Farah Qamar, Najeeha Talat Iqbal, Brenda Kwambana, Inacio Mandomando, Timothy L McMurry, Caroline Ochieng, John B Ochieng, Melvin Ochieng, Clayton Onyango, Sandra Panchalingam, Adil Kalam, Fatima Aziz, Shahida Qureshi, Thandavarayan Ramamurthy, James H Roberts, Debasish Saha, Samba O Sow, Suzanne E Stroup, Dipika Sur, Boubou Tamboura, Mami Taniuchi, Sharon M Tennant, Deanna Toema, Yukun Wu, Anita Zaidi, James P Nataro, Karen L Kotloff, Myron M Levine, and Eric R Houpt Lancet (London, England) 2016 Sep 388(10051) 1291-301 |
| Molecular Surveillance Identifies Multiple Transmissions of Typhoid in West Africa. , Vanessa K Wong, Kathryn E Holt, Chinyere Okoro, Stephen Baker, Derek J Pickard, Florian Marks, Andrew J Page, Grace Olanipekun, Huda Munir, Roxanne Alter, Paul D Fey, Nicholas A Feasey, Francois-Xavier Weill, Simon Le Hello, Peter J Hart, Samuel Kariuki, Robert F Breiman, Melita A Gordon, Robert S Heyderman, Jan Jacobs, Octavie Lunguya, Chisomo Msefula, Calman A MacLennan, Karen H Keddy, Anthony M Smith, Robert S Onsare, Elizabeth De Pinna, Satheesh Nair, Ben Amos, Gordon Dougan, and Stephen Obaro PLoS neglected tropical diseases 2016 Sep 10(9) e0004781 |
| Phylogenetic Analysis of Invasive Serotype 1 Pneumococcus in South Africa, 1989-2013. Mignon du Plessis, Mushal Allam, Stefano Tempia, Nicole Wolter, Linda de Gouveia, Claire von Mollendorf, Keith A Jolley, Nontombi Mbelle, Jeannette Wadula, Jennifer E Cornick, Dean B Everett, Lesley McGee, Robert F Breiman, Rebecca A Gladstone, Stephen D Bentley, Keith P Klugman, and Anne von Gottberg Journal of clinical microbiology 2016 Mar |
| A Multicountry Molecular Analysis of Salmonella enterica Serovar Typhi With Reduced Susceptibility to Ciprofloxacin in Sub-Saharan Africa. Hassan M Al-Emran, Daniel Eibach, Ralf Krumkamp, Mohammad Ali, Stephen Baker, Holly M Biggs, Morten Bjerregaard-Andersen, Robert F Breiman, John D Clemens, John A Crump, Ligia Maria Cruz Espinoza, Jessica Deerin, Denise Myriam Dekker, Amy Gassama Sow, Julian T Hertz, Justin Im, Samuel Ibrango, Vera von Kalckreuth, Leon Parfait Kabore, Frank Konings, Sandra Valborg Løfberg, Christian G Meyer, Eric D Mintz, Joel M Montgomery, Beatrice Olack, Gi Deok Pak, Ursula Panzner, Se Eun Park, Jean Luco Tsiriniaina Razafindrabe, Henintsoa Rabezanahary, Jean Philibert Rakotondrainiarivelo, Raphaël Rakotozandrindrainy, Tiana Mirana Raminosoa, Heidi Schütt-Gerowitt, Emmanuel Sampo, Abdramane Bassiahi Soura, Adama Tall, Michelle Warren, Thomas F Wierzba, Jürgen May, and Florian Marks Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Mar 62 Suppl 1S42-6 |
| Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events. Vanessa K Wong, Stephen Baker, Derek J Pickard, Julian Parkhill, Andrew J Page, Nicholas A Feasey, Robert A Kingsley, Nicholas R Thomson, Jacqueline A Keane, François-Xavier Weill, David J Edwards, Jane Hawkey, Simon R Harris, Alison E Mather, Amy K Cain, James Hadfield, Peter J Hart, Nga Tran Vu Thieu, Elizabeth J Klemm, Dafni A Glinos, Robert F Breiman, Conall H Watson, Samuel Kariuki, Melita A Gordon, Robert S Heyderman, Chinyere Okoro, Jan Jacobs, Octavie Lunguya, W John Edmunds, Chisomo Msefula, Jose A Chabalgoity, Mike Kama, Kylie Jenkins, Shanta Dutta, Florian Marks, Josefina Campos, Corinne Thompson, Stephen Obaro, Calman A MacLennan, Christiane Dolecek, Karen H Keddy, Anthony M Smith, Christopher M Parry, Abhilasha Karkey, E Kim Mulholland, James I Campbell, Sabina Dongol, Buddha Basnyat, Muriel Dufour, Don Bandaranayake, Take Toleafoa Naseri, Shalini Pravin Singh, Mochammad Hatta, Paul Newton, Robert S Onsare, Lupeoletalalei Isaia, David Dance, Viengmon Davong, Guy Thwaites, Lalith Wijedoru, John A Crump, Elizabeth De Pinna, Satheesh Nair, Eric J Nilles, Duy Pham Thanh, Paul Turner, Sona Soeng, Mary Valcanis, Joan Powling, Karolina Dimovski, Geoff Hogg, Jeremy Farrar, Kathryn E Holt, and Gordon Dougan Nat. Genet. 2015 May 11. |
| Prevalence and diversity of small mammal-associated Bartonella species in rural and urban Kenya. Jo E B Halliday, Darryn L Knobel, Bernard Agwanda, Ying Bai, Robert F Breiman, Sarah Cleaveland, M Kariuki Njenga, and Michael Kosoy PLoS Negl Trop Dis 2015 Mar 9(3) e0003608 |
| Defining the phylogenomics of Shigella species: a pathway to diagnostics. Jason W Sahl, Carolyn R Morris, Jennifer Emberger, Claire M Fraser, John Benjamin Ochieng, Jane Juma, Barry Fields, Robert F Breiman, Matthew Gilmour, James P Nataro, and David A Rasko Journal of clinical microbiology 2015 Mar (3) 951-60 |
| Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition. Mihai Pop, Alan W Walker, Joseph Paulson, Brianna Lindsay, Martin Antonio, M Anowar Hossain, Joseph Oundo, Boubou Tamboura, Volker Mai, Irina Astrovskaya, Hector Corrada Bravo, Richard Rance, Mark Stares, Myron M Levine, Sandra Panchalingam, Karen Kotloff, Usman N Ikumapayi, Chinelo Ebruke, Mitchell Adeyemi, Dilruba Ahmed, Firoz Ahmed, Meer Taifur Alam, Ruhul Amin, Sabbir Siddiqui, John B Ochieng, Emmanuel Ouma, Jane Juma, Euince Mailu, Richard Omore, J Glenn Morris, Robert F Breiman, Debasish Saha, Julian Parkhill, James P Nataro, and O Colin Stine Genome biology 2014 (6) R76 |
| Molecular detection of adenoviruses, rhabdoviruses, and paramyxoviruses in bats from Kenya. Christina Conrardy, Ying Tao, Ivan V Kuzmin, Michael Niezgoda, Bernard Agwanda, Robert F Breiman, Larry J Anderson, Charles E Rupprecht, and Suxiang Tong Am. J. Trop. Med. Hyg. 2014 Aug 91(2) 258-66 |
| Application of TaqMan low-density arrays for simultaneous detection of multiple respiratory pathogens. Maja Kodani, Genyan Yang, Laura M Conklin, Tatiana C Travis, Cynthia G Whitney, Larry J Anderson, Stephanie J Schrag, Thomas H Taylor, Bernard W Beall, Robert F Breiman, Daniel R Feikin, M Kariuki Njenga, Leonard W Mayer, M Steven Oberste, Maria Lucia C Tondella, Jonas M Winchell, Stephen L Lindstrom, Dean D Erdman, and Barry S Fields Journal of clinical microbiology 2011 Jun 49(6) 2175-82 |
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- Page last updated:Aug 05, 2020
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