CDC-Authored Genomics and Precision Health Publications Database

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Last data update: May 20, 2022. (Total: 3839 publications since 2011)

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Records 1-23 (of 23 Records)

Query Trace: all>>Sopio Chochua[CDC Author]
Cluster Transmission Drives Invasive Group A Streptococcus Disease Within the US and is Focused on Communities Experiencing Disadvantage. Benjamin Metcalf, Srinivas Nanduri, Sopio Chochua, Yuan Li, Katherine Fleming-Dutra, Lesley McGee, and Bernard Beall The Journal of infectious diseases 2022 Similar articles in PubMed DOI:10.1093/infdis/jiac162
Invasive pneumococcal disease clusters disproportionally impact persons experiencing homelessness, injecting drug users, and the western United States. Bernard Beall, Sopio Chochua, Zhongya Li, Theresa Tran, Jasmine Varghese, Lesley McGee, Yuan Li, and Benjamin Metcalf The Journal of infectious diseases 2022 Similar articles in PubMed DOI:10.1093/infdis/jiac058
Genomic Characterization of Group A Streptococci Causing Pharyngitis and Invasive Disease in Colorado, USA, June 2016 - April 2017. Yuan Li, Samuel Dominguez, Srinivas A Nanduri, Joy Rivers, Saundra Mathis, Zhongya Li, Lesley McGee, Sopio Chochua, Benjamin J Metcalf, Chris A Van Beneden, Bernard Beall, and Lisa Miller The Journal of infectious diseases 2021 Similar articles in PubMed DOI:10.1093/infdis/jiab565
Genomic Surveillance of Streptococcus pyogenes Strains Causing Invasive Disease, United States, 2016-2017. Yuan Li, Joy Rivers, Saundra Mathis, Zhongya Li, Srinivasan Velusamy, Srinivas A Nanduri, Chris A Van Beneden, Paula Snippes-Vagnone, Ruth Lynfield, Lesley McGee, Sopio Chochua, Benjamin J Metcalf, and Bernard Beall Frontiers in microbiology 2020 111547 Similar articles in PubMed DOI:10.3389/fmicb.2020.01547
Patterns of antibiotic nonsusceptibility among invasive group A Streptococcus infections-United States, 2006-2017. Katherine Fay, Jennifer Onukwube, Sopio Chochua, William Schaffner, Paul Cieslak, Ruth Lynfield, Alison Muse, Chad Smelser, Lee H Harrison, Monica Farley, Susan Petit, Nisha Alden, Mirasol Apostal, Paula Snippes Vagnone, Srinivas Nanduri, Bernard Beall, and Chris A Van Beneden Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2021 Similar articles in PubMed DOI:10.1093/cid/ciab575
Low but Increasing Prevalence of Reduced Beta-lactam Susceptibility Among Invasive Group B Streptococcal Isolates, US Population-Based Surveillance, 1998-2018. Miwako Kobayashi, Lesley McGee, Sopio Chochua, Mirasol Apostol, Nisha B Alden, Monica M Farley, Lee H Harrison, Ruth Lynfield, Paula Snippes Vagnone, Chad Smelser, Alison Muse, Ann R Thomas, Li Deng, Benjamin J Metcalf, Bernard W Beall, and Stephanie J Schrag Open forum infectious diseases 2021 Feb 8(2) ofaa634 Similar articles in PubMed DOI:10.1093/ofid/ofaa634
Invasive pneumococcal strain distributions and isolate clusters associated with persons experiencing homelessness during 2018. Benjamin J Metcalf, Sopio Chochua, Hollis Walker, Theresa Tran, Zhongya Li, Jasmine Varghese, Paula M Snippes Vagnone, Ruth Lynfield, Lesley McGee, Yuan Li, Tamara Pilishvili, and Bernard Beall Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2020 Nov Similar articles in PubMed DOI:10.1093/cid/ciaa1680
Sequential quadriplex real-time PCR for identifying 20 common emm types of Group A Streptococcus . Srinivasan Velusamy, Katherine Jordak, Madeline Kupor, Sopio Chochua, Lesley McGee, and Bernard Beall Journal of clinical microbiology 2020 Oct Similar articles in PubMed DOI:10.1128/JCM.01764-20
Multistate, population-based distributions of candidate vaccine targets, clonal complexes, and resistance features of invasive Group B Streptococci within the US: 2015-2017. Lesley McGee, Sopio Chochua, Zhongya Li, Saundra Mathis, Joy Rivers, Benjamin Metcalf, Alison Ryan, Nisha Alden, Monica M Farley, Lee H Harrison, Paula Snippes Vagnone, Ruth Lynfield, Chad Smelser, Alison Muse, Ann R Thomas, Stephanie Schrag, and Bernard W Beall Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2020 Feb Similar articles in PubMed DOI:10.1093/cid/ciaa151
Streptococcus pyogenes pbp2x Mutation Confers Reduced Susceptibility to β-lactam antibiotics. Kirsten Vannice, Jessica Ricaldi, Srinivas Nanduri, Ferric C Fang, John Lynch, Chloe Bryson-Cahn, Theodore Wright, Jeff Duchin, Meagan Kay, Sopio Chochua, Chris Van Beneden, and Bernard Beall Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Oct Similar articles in PubMed DOI:10.1093/cid/ciz1000
Multistate population and whole genome sequence based strain surveillance of invasive pneumococci recovered in the United States during 2017. Jasmine Varghese, Sopio Chochua, Theresa Tran, Hollis Walker, Zhongya Li, Paula M Snippes Vagnone, Ruth Lynfield, Lesley McGee, Yuan Li, Benjamin Metcalf, Tamara Pilishvili, and Bernard Beall Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2019 Sep Similar articles in PubMed DOI:10.1016/j.cmi.2019.09.008
Increase in Invasive Group A Streptococcal Disease and Emergence of Mucoid Strains in a Pediatric Population: February-June 2017. Lorne W Walker, Lindsay Montoya, Sopio Chochua, Bernard Beall, and Michael Green Open forum infectious diseases 2019 Jul (7) ofz275 Similar articles in PubMed DOI:10.1093/ofid/ofz275
Emergent Invasive Group A Streptococcus dysgalactiae subsp. Equisimilis, United States, 2015-2018. Sopio Chochua, Joy Rivers, Saundra Mathis, Zhongya Li, Srinivasan Velusamy, Lesley McGee, Chris Van Beneden, Yuan Li, Benjamin J Metcalf, and Bernard Beall Emerging infectious diseases 2019 Aug (8) Similar articles in PubMed DOI:10.3201/eid2508.181758
Group A Streptococcus outbreak among residents and employees of two skilled nursing facilities: North Carolina, 2017. Katie J Palladino, Tammra Morrison, Sopio Chochua, Lori Bowers, and Jennifer K MacFarquhar American journal of infection control 2019 Jan Similar articles in PubMed DOI:10.1016/j.ajic.2018.12.006
Genome-wide association analyses of invasive pneumococcal isolates identify a missense bacterial mutation associated with meningitis. Yuan Li, Benjamin J Metcalf, Sopio Chochua, Zhongya Li, Hollis Walker, Theresa Tran, Paulina A Hawkins, Ryan Gierke, Tamara Pilishvili, Lesley McGee, and Bernard W Beall Nature communications 2019 Jan (1) 178 Similar articles in PubMed DOI:10.1038/s41467-018-07997-y
A Population-Based Descriptive Atlas of Invasive Pneumococcal Strains Recovered Within the U.S. During 2015-2016. Bernard Beall, Sopio Chochua, Robert E Gertz, Yuan Li, Zhongya Li, Lesley McGee, Benjamin J Metcalf, Jessica Ricaldi, Theresa Tran, Hollis Walker, and Tamara Pilishvili Frontiers in microbiology 2018 92670 Similar articles in PubMed DOI:10.3389/fmicb.2018.02670
Population and Whole Genome Sequence Based Characterization of Invasive Group A Streptococci Recovered in the United States during 2015. Sopio Chochua, Ben J Metcalf, Zhongya Li, Joy Rivers, Saundra Mathis, Delois Jackson, Robert E Gertz, Velusamy Srinivasan, Ruth Lynfield, Chris Van Beneden, Lesley McGee, and Bernard Beall mBio 2017 Sep (5) Similar articles in PubMed DOI:10.1128/mBio.01422-17
Validation of ß-lactam minimum inhibitory concentration predictions for pneumococcal isolates with newly encountered penicillin binding protein (PBP) sequences. Yuan Li, Benjamin J Metcalf, Sopio Chochua, Zhongya Li, Robert E Gertz, Hollis Walker, Paulina A Hawkins, Theresa Tran, Lesley McGee, Bernard W Beall, and BMC genomics 2017 Aug (1) 621 Similar articles in PubMed DOI:10.1186/s12864-017-4017-7
Key features of invasive pneumococcal isolates recovered in Lima, Peru determined through whole genome sequencing. Paulina Hawkins, Erik Mercado, Sopio Chochua, Maria E Castillo, Isabel Reyes, Eduardo Chaparro, Rebecca Gladstone, Stephen D Bentley, Robert F Breiman, Benjamin J Metcalf, Bernard Beall, Theresa J Ochoa, and Lesley McGee International journal of medical microbiology : IJMM 2017 Jul Similar articles in PubMed DOI:10.1016/j.ijmm.2017.07.008
Invasive Serotype 35B Pneumococci Including an Expanding Serotype Switch Lineage, United States, 2015-2016. Sopio Chochua, Benjamin J Metcalf, Zhongya Li, Hollis Walker, Theresa Tran, Lesley McGee, and Bernard Beall Emerging infectious diseases 2017 06 (6) 922-930 Similar articles in PubMed DOI:10.3201/eid2306.170071
Cross-resistance to lincosamides, streptogramins A and pleuromutilins in Streptococcus agalactiae isolates from the USA. Paulina A Hawkins, Caitlin S Law, Benjamin J Metcalf, Sopio Chochua, Delois M Jackson, Lars F Westblade, Robert Jerris, Bernard W Beall, and Lesley McGee The Journal of antimicrobial chemotherapy 2017 Mar Similar articles in PubMed DOI:10.1093/jac/dkx077
Streptococcus pneumoniae of Serotypes 9 and 14 Circulating in Brazil Over a 23-Year Period Prior to the Introduction of PCV10: Role of International Clones in the Evolution of Antimicrobial Resistance and Description of a Novel Genotype. Tatiana C A Pinto, Fabíola C O Kegele, Cícero A G Dias, Rosana R Barros, José M Peralta, Vânia L C Merquior, Maria da Gloria Carvalho, Sopio Chochua, Paulina Hawkins, Lesley McGee, and Lucia M Teixeira Antimicrobial agents and chemotherapy 2016 Aug Similar articles in PubMed DOI:10.1128/AAC.00673-16
Penicillin-Binding Protein Transpeptidase Signatures for Tracking and Predicting ß-Lactam Resistance Levels in Streptococcus pneumoniae. Yuan Li, Benjamin J Metcalf, Sopio Chochua, Zhongya Li, Robert E Gertz, Hollis Walker, Paulina A Hawkins, Theresa Tran, Cynthia G Whitney, Lesley McGee, and Bernard W Beall mBio 2016 7(3) Similar articles in PubMed DOI:10.1128/mBio.00756-16