CDC-Authored Genomics and Precision Health Publications Database

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Last data update: Sep 16, 2021. (Total: 3468 publications since 2011)

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Records 1-14 (of 14 Records)

Query Trace: all>>Anupama Shankar[CDC Author]
MicrobeTrace: Retooling molecular epidemiology for rapid public health response. Ellsworth M Campbell, Anthony Boyles, Anupama Shankar, Jay Kim, Sergey Knyazev, Roxana Cintron, and William M Switzer PLoS computational biology 2021 17(9) e1009300 Similar articles in PubMed DOI:10.1371/journal.pcbi.1009300
Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction. Sergey Knyazev, Viachaslau Tsyvina, Anupama Shankar, Andrew Melnyk, Alexander Artyomenko, Tatiana Malygina, Yuri B Porozov, Ellsworth M Campbell, William M Switzer, Pavel Skums, Serghei Mangul, and Alex Zelikovsky Nucleic acids research 2021 Similar articles in PubMed DOI:10.1093/nar/gkab576
Human T-cell lymphotropic virus type 1 transmission dynamics in rural villages in the democratic republic of the congo with high nonhuman primate exposure. Megan Halbrook, Adva Gadoth, Anupama Shankar, HaoQiang Zheng, Ellsworth M Campbell, Nicole A Hoff, Jean-Jacques Muyembe, Emile Okitolonda Wemakoy, Anne W Rimoin, and William M Switzer PLoS neglected tropical diseases 2021 Jan 15(1) e0008923 Similar articles in PubMed DOI:10.1371/journal.pntd.0008923
Complete Genome Sequence of a Baboon Simian Foamy Virus Isolated from an Infected Human. Anupama Shankar, Vedapuri Shanmugam, and William M Switzer Microbiology resource announcements 2020 Jul 9(27) Similar articles in PubMed DOI:10.1128/MRA.00522-20
Phylodynamic Analysis Complements Partner Services by Identifying Acute and Unreported HIV Transmission. Ellsworth M Campbell, Anne Patala, Anupama Shankar, Jin-Fen Li, Jeffrey A Johnson, Emily Westheimer, Cynthia L Gay, Stephanie E Cohen, William M Switzer, and Philip J Peters Viruses 2020 Jan (2) Similar articles in PubMed DOI:10.3390/v12020145
Molecular Analysis of the Complete Genome of a Simian Foamy Virus Infecting Hylobates pileatus (pileated gibbon) Reveals Ancient Co-Evolution with Lesser Apes. Anupama Shankar, Samuel D Sibley, Tony L Goldberg, and William M Switzer Viruses 2019 Jul (7) Similar articles in PubMed DOI:10.3390/v11070605
Genome-wide patterns of gene expression in a wild primate indicate species-specific mechanisms associated with tolerance to natural simian immunodeficiency virus infection. Noah D Simons, Geeta N Eick, Maria J Ruiz-Lopez, David Hyeroba, Patrick A Omeja, Geoffrey Weny, Colin A Chapman, Tony L Goldberg, HaoQiang Zheng, Anupama Shankar, William M Switzer, Simon D W Frost, James H Jones, Kirstin N Sterner, and Nelson Ting Genome biology and evolution 2019 May Similar articles in PubMed DOI:10.1093/gbe/evz099
Detailed Transmission Network Analysis of a Large Opiate-Driven Outbreak of HIV Infection in the United States. Ellsworth M Campbell, Hongwei Jia, Anupama Shankar, Debra Hanson, Wei Luo, Silvina Masciotra, S Michele Owen, Alexandra M Oster, Romeo R Galang, Michael W Spiller, Sara J Blosser, Erika Chapman, Jeremy C Roseberry, Jessica Gentry, Pamela Pontones, Joan Duwve, Paula Peyrani, Ron M Kagan, Jeannette M Whitcomb, Philip J Peters, Walid Heneine, John T Brooks, and William M Switzer The Journal of infectious diseases 2017 Oct Similar articles in PubMed DOI:10.1093/infdis/jix307
Origin and spread of HIV-1 in persons who inject drugs in Bulgaria. Ivailo Alexiev, Anupama Shankar, Reneta Dimitrova, Anna Gancheva, Asia Kostadinova, Pavel Teoharov, Elitsa Golkocheva, Maria Nikolova, Mariya Muhtarova, Ivaylo Elenkov, Mariyana Stoycheva, Daniela Nikolova, Tonka Varleva, and William M Switzer Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 May Similar articles in PubMed DOI:10.1016/j.meegid.2016.05.029
An expanded search for simian foamy viruses (SFV) in Brazilian New World primates identifies novel SFV lineages and host age-related infections. Cláudia P Muniz, Hongwei Jia, Anupama Shankar, Lian L Troncoso, Anderson M Augusto, Elisabete Farias, Alcides Pissinatti, Luiz P Fedullo, André F Santos, Marcelo A Soares, and William M Switzer Retrovirology 2015 12(1) 94 Similar articles in PubMed DOI:10.1186/s12977-015-0217-x
Discovery and full genome characterization of a new SIV lineage infecting red-tailed guenons (Cercopithecus ascanius schmidti) in Kibale National Park, Uganda. Michael Lauck, William M Switzer, Samuel D Sibley, David Hyeroba, Alex Tumukunde, Geoffrey Weny, Anupama Shankar, Justin M Greene, Adam J Ericsen, HaoQiang Zheng, Nelson Ting, Colin A Chapman, Thomas C Friedrich, Tony L Goldberg, and David H O'Connor Retrovirology 2014 55 Similar articles in PubMed DOI:10.1186/1742-4690-11-55
Detailed molecular epidemiologic characterization of HIV-1 infection in Bulgaria reveals broad diversity and evolving phylodynamics. Ivailo Alexiev Ivanov, Danail Beshkov, Anupama Shankar, Debra L Hanson, Dimitrios Paraskevis, Viara Georgieva, Lyudmila Karamacheva, Hristo Taskov, Tonka Varleva, Ivaylo Elenkov, Mariana Stoicheva, Daniela Nikolova, and William M Switzer PLoS ONE 2013 8(3) e59666 Similar articles in PubMed DOI:10.1371/journal.pone.0059666
No evidence of murine leukemia virus-related viruses in live attenuated human vaccines. William M Switzer, HaoQiang Zheng, Graham Simmons, Yanchen Zhou, Shaohua Tang, Anupama Shankar, Beatrix Kapusinszky, Eric L Delwart, and Walid Heneine PloS one 2011 6(12) e29223 Similar articles in PubMed DOI:10.1371/journal.pone.0029223
Detection of murine leukemia virus or mouse DNA in commercial RT-PCR reagents and human DNAs. HaoQiang Zheng, Hongwei Jia, Anupama Shankar, Walid Heneine, and William M Switzer PloS one 2011 6(12) e29050 Similar articles in PubMed DOI:10.1371/journal.pone.0029050