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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Jun 02, 2023. (Total: 4311 publications since 2011)
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Records 1-14 (of 14 Records)
Query Trace: all>>Anupama Shankar[CDC Author]
MicrobeTrace: Retooling molecular epidemiology for rapid public health response.
Campbell EM , Boyles A , Shankar A , Kim J , Knyazev S , Cintron R , Switzer WM .
PLoS Comput Biol 2021 17 (9) e1009300 type
Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction.
Knyazev S , Tsyvina V , Shankar A , Melnyk A , Artyomenko A , Malygina T , Porozov YB , Campbell EM , Switzer WM , Skums P , Mangul S , Zelikovsky A .
Nucleic Acids Res 2021 49 (17) e102
Human T-cell lymphotropic virus type 1 transmission dynamics in rural villages in the democratic republic of the congo with high nonhuman primate exposure.
Halbrook M , Gadoth A , Shankar A , Zheng H , Campbell EM , Hoff NA , Muyembe JJ , Wemakoy EO , Rimoin AW , Switzer WM .
PLoS Negl Trop Dis 2021 15 (1) e0008923
Complete Genome Sequence of a Baboon Simian Foamy Virus Isolated from an Infected Human.
Shankar A , Shanmugam V , Switzer WM .
Microbiol Resour Announc 2020 9 (27)
Phylodynamic Analysis Complements Partner Services by Identifying Acute and Unreported HIV Transmission.
Campbell EM , Patala A , Shankar A , Li JF , Johnson JA , Westheimer E , Gay CL , Cohen SE , Switzer WM , Peters PJ .
Viruses 2020 12 (2)
Molecular Analysis of the Complete Genome of a Simian Foamy Virus Infecting Hylobates pileatus (pileated gibbon) Reveals Ancient Co-Evolution with Lesser Apes.
Shankar A , Sibley SD , Goldberg TL , Switzer WM .
Viruses 2019 11 (7)
Genome-wide patterns of gene expression in a wild primate indicate species-specific mechanisms associated with tolerance to natural simian immunodeficiency virus infection.
Simons ND , Eick GN , Ruiz-Lopez MJ , Hyeroba D , Omeja PA , Weny G , Chapman CA , Goldberg TL , Zheng H , Shankar A , Switzer WM , Frost SDW , Jones JH , Sterner KN , Ting N .
Genome Biol Evol 2019 11 (6) 1630-1643
Detailed Transmission Network Analysis of a Large Opiate-Driven Outbreak of HIV Infection in the United States.
Campbell Ellsworth M, Jia Hongwei, Shankar Anupama, Hanson Debra, Luo Wei, Masciotra Silvina, Owen S Michele, Oster Alexandra M, Galang Romeo R, Spiller Michael W, Blosser Sara J, Chapman Erika, Roseberry Jeremy C, Gentry Jessica, Pontones Pamela, Duwve Joan, Peyrani Paula, Kagan Ron M, Whitcomb Jeannette M, Peters Philip J, Heneine Walid, Brooks John T, Switzer William M. The Journal of infectious diseases 2017 Oct .
The Journal of infectious diseases 2017 Oct
Origin and spread of HIV-1 in persons who inject drugs in Bulgaria.
Alexiev Ivailo, Shankar Anupama, Dimitrova Reneta, Gancheva Anna, Kostadinova Asia, Teoharov Pavel, Golkocheva Elitsa, Nikolova Maria, Muhtarova Mariya, Elenkov Ivaylo, Stoycheva Mariyana, Nikolova Daniela, Varleva Tonka, Switzer William M.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 May .
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 May
An expanded search for simian foamy viruses (SFV) in Brazilian New World primates identifies novel SFV lineages and host age-related infections.
Muniz Cláudia P, Jia Hongwei, Shankar Anupama, Troncoso Lian L, Augusto Anderson M, Farias Elisabete, Pissinatti Alcides, Fedullo Luiz P, Santos André F, Soares Marcelo A, Switzer William M. Retrovirology 2015 12(1) 94 .
Retrovirology 2015 12(1) 94
Discovery and full genome characterization of a new SIV lineage infecting red-tailed guenons (Cercopithecus ascanius schmidti) in Kibale National Park, Uganda.
Lauck Michael, Switzer William M, Sibley Samuel D, Hyeroba David, Tumukunde Alex, Weny Geoffrey, Shankar Anupama, Greene Justin M, Ericsen Adam J, Zheng HaoQiang, Ting Nelson, Chapman Colin A, Friedrich Thomas C, Goldberg Tony L, O'Connor David H.Retrovirology 2014 55 .
Retrovirology 2014 55
Detailed molecular epidemiologic characterization of HIV-1 infection in Bulgaria reveals broad diversity and evolving phylodynamics.
Ivanov Ivailo Alexiev, Beshkov Danail, Shankar Anupama, Hanson Debra L, Paraskevis Dimitrios, Georgieva Viara, Karamacheva Lyudmila, Taskov Hristo, Varleva Tonka, Elenkov Ivaylo, Stoicheva Mariana, Nikolova Daniela, Switzer William M. PLoS ONE 2013 8(3) e59666 .
PLoS ONE 2013 8(3) e59666
No evidence of murine leukemia virus-related viruses in live attenuated human vaccines.
Switzer William M, Zheng Haoqiang, Simmons Graham, Zhou Yanchen, Tang Shaohua, Shankar Anupama, Kapusinszky Beatrix, Delwart Eric L, Heneine Walid. PloS one 2011 6(12) e29223 .
PloS one 2011 6(12) e29223
Detection of murine leukemia virus or mouse DNA in commercial RT-PCR reagents and human DNAs.
Zheng HaoQiang, Jia Hongwei, Shankar Anupama, Heneine Walid, Switzer William M. PloS one 2011 6(12) e29050 .
PloS one 2011 6(12) e29050
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