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Public Health Genomics and Precision Health Knowledge Base (v8.2)
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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB
CDC-Authored Genomics and Precision Health Publications Database
Last data update: Jan 27, 2023
. (Total: 4182 publications since 2011)
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Records 1-26 (of 26 Records)
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all>>Christopher A Gulvik[CDC Author]
Benchmark datasets for SARS-CoV-2 surveillance bioinformatics.
Lingzi Xiaoli
,
Jill V Hagey
, Daniel J Park,
Christopher A Gulvik
, Erin L Young, Nabil-Fareed Alikhan,
Adrian Lawsin
,
Norman Hassell
,
Kristen Knipe
, Kelly F Oakeson,
Adam C Retchless
, Migun Shakya, Chien-Chi Lo, Patrick Chain, Andrew J Page,
Benjamin J Metcalf
,
Michelle Su
,
Jessica Rowell
,
Eshaw Vidyaprakash
,
Clinton R Paden
,
Andrew D Huang
,
Dawn Roellig
,
Ketan Patel
,
Kathryn Winglee
,
Michael R Weigand
, and
Lee S Katz
PeerJ 2022 10e13821
Similar articles in PubMed
DOI:
10.7717/peerj.13821
Strains Associated with Two 2020 Welder Anthrax Cases in the United States Belong to Separate Lineages within Bacillus cereus sensu lato.
Laura M Carroll,
Chung K Marston
,
Cari B Kolton
,
Christopher A Gulvik
,
Jay E Gee
,
Zachary P Weiner
, and Jasna Kovac
Pathogens (Basel, Switzerland) 2022 11(8)
Similar articles in PubMed
DOI:
10.3390/pathogens11080856
Epidemiologic Investigation of Two Welder's Anthrax Cases Caused by Bacillus Cereus Group Bacteria: Occupational Link Established by Environmental Detection.
Patrick Dawson
,
Johanna S Salzer
,
Caroline A Schrodt
,
Karl Feldmann
,
Cari B Kolton
,
Jay E Gee
,
Chung K Marston
,
Christopher A Gulvik
,
Mindy G Elrod
,
Aaron Villarma
,
Rita M Traxler
,
María E Negrón
,
Kate A Hendricks
,
Heather Moulton-Meissner
,
Laura J Rose
, Paul Byers, Kathryn Taylor, Daphne Ware, Gary A Balsamo, Theresa Sokol, Bret Barrett, Erica Payne, Saad Zaheer, Ga On Jung, Stephen Long, Ricardo Quijano, Lindsey LeBouf, Briana O'Sullivan, Erin Swaney,
James M Antonini
,
Marie A de Perio
,
Zachary Weiner
,
William A Bower
, and
Alex R Hoffmaster
Pathogens (Basel, Switzerland) 2022 11(8)
Similar articles in PubMed
DOI:
10.3390/pathogens11080825
In silico analyses of penicillin binding proteins in Burkholderia pseudomallei uncovers SNPs with utility for phylogeography, species differentiation, and sequence typing.
Heather P McLaughlin
,
Christopher A Gulvik
, and
David Sue
PLoS neglected tropical diseases 2022 16(4) e0009882
Similar articles in PubMed
DOI:
10.1371/journal.pntd.0009882
Software testing in microbial bioinformatics: a call to action.
Boas C L van der Putten, C I Mendes, Brooke M Talbot, Jolinda de Korne-Elenbaas, Rafael Mamede, Pedro Vila-Cerqueira, Luis Pedro Coelho,
Christopher A Gulvik
,
Lee S Katz
, and The Asm Ngs Hackathon Participants
Microbial genomics 2022 8(3)
Similar articles in PubMed
DOI:
10.1099/mgen.0.000790
Multistate Outbreak of Melioidosis Associated with Imported Aromatherapy Spray.
Jay E Gee
,
William A Bower
,
Amber Kunkel
,
Julia Petras
,
Jenna Gettings
, Maria Bye,
Melanie Firestone
,
Mindy G Elrod
,
Lindy Liu
,
David D Blaney
, Allison Zaldivar, Chelsea Raybern, Farah S Ahmed, Heidi Honza, Shelley Stonecipher, Briana J O'Sullivan,
Ruth Lynfield
, Melissa Hunter, Skyler Brennan, Jessica Pavlick, Julie Gabel, Cherie Drenzek, Rachel Geller, Crystal Lee,
Jana M Ritter
, Sherif R Zaki,
Christopher A Gulvik
,
W Wyatt Wilson
,
Elizabeth Beshearse
, Bart J Currie, Jessica R Webb,
Zachary P Weiner
,
María E Negrón
, and
Alex R Hoffmaster
The New England journal of medicine 2022 386(9) 861-868
Similar articles in PubMed
DOI:
10.1056/NEJMoa2116130
Notes from the Field: Fatal Anthrax Pneumonia in Welders and Other Metalworkers Caused by Bacillus cereus Group Bacteria Containing Anthrax Toxin Genes - U.S. Gulf Coast States, 1994-2020.
Patrick Dawson
,
Caroline A Schrodt
,
Karl Feldmann
,
Rita M Traxler
,
Jay E Gee
,
Cari B Kolton
,
Chung K Marston
,
Christopher A Gulvik
,
James M Antonini
,
María E Negrón
,
John R McQuiston
,
Kate Hendricks
,
Zachary Weiner
, Gary A Balsamo, Theresa Sokol, Paul Byers, Kathryn Taylor, Saad Zaheer, Stephen Long, Briana O'Sullivan,
Marie A de Perio
,
Alex R Hoffmaster
,
Johanna S Salzer
, and
William A Bower
MMWR. Morbidity and mortality weekly report 2021 70(41) 1453-1454
Similar articles in PubMed
DOI:
10.15585/mmwr.mm7041a4
Complete Genome Sequence of Rhodococcus sp. Strain W8901, a Human Clinical Specimen, Assembled Using MiSeq and MinION Sequence Data.
Christopher A Gulvik
,
Dhwani Batra
,
Dakota T Howard
,
Milli Sheth
,
Ben W Humrighouse
,
Justin Lee
,
John R McQuiston
, and
Brent A Lasker
Microbiology resource announcements 2021 10(35) e0061321
Similar articles in PubMed
DOI:
10.1128/MRA.00613-21
Complete and Circularized Bacterial Genome Sequence of Gordonia sp. Strain X0973
Christopher A Gulvik
,
Dhwani Batra
,
Lori A Rowe
,
Milli Sheth
, Sarah Nobles,
Justin S Lee
,
John R McQuiston
, and
Brent A Lasker
Microbiology resource announcements 2021 10(9)
Similar articles in PubMed
DOI:
10.1128/MRA.01479-20
A real-time multiplex PCR assay for detection of the causative agents of rat bite fever, Streptobacillus moniliformis and zoonoticStreptobacillus species.
Aubree J Kelly
,
Melissa L Ivey
,
Christopher A Gulvik
,
Ben W Humrighouse
, and
John R McQuiston
Diagnostic microbiology and infectious disease 2021 100(2) 115335
Similar articles in PubMed
DOI:
10.1016/j.diagmicrobio.2021.115335
Genomic Diversity of Burkholderia pseudomallei in Ceara, Brazil.
Jay E Gee
,
Christopher A Gulvik
, Debora S C M Castelo-Branco, José J C Sidrim, Marcos F G Rocha, Rossana A Cordeiro, Raimunda S N Brilhante, Tereza J P G Bandeira, Iracema Patrício, Lucas P Alencar, Ana Karoline da Costa Ribeiro,
Mili Sheth
,
Mark A Deka
,
Alex R Hoffmaster
, and Dionne Rolim
mSphere 2021 6(1)
Similar articles in PubMed
DOI:
10.1128/mSphere.01259-20
Genomic Diversity of Burkholderia pseudomallei Isolates, Colombia.
Carolina Duarte, Franco Montufar, Jaime Moreno, Dora Sánchez, Jose Yesid Rodríguez, Alfredo G Torres, Soraya Morales, Adriana Bautista, Mónica G Huertas, Julia N Myers,
Christopher A Gulvik
,
Mindy G Elrod
,
David D Blaney
, and
Jay E Gee
Emerging infectious diseases 2021 27(2) 655-658
Similar articles in PubMed
DOI:
10.3201/eid2702.202824
Complete and Circularized Genome Assemblies of the Kroppenstedtia eburnea Genus Type Strain and the Kroppenstedtia pulmonis Species Type Strain with MiSeq and MinION Sequence Data.
Christopher A Gulvik
,
Dhwani Batra
,
Lori A Rowe
,
Milli Sheth
,
Ben W Humrighouse
,
Dakota T Howard
,
Justin Lee
,
John R McQuiston
, and
Brent A Lasker
Microbiology resource announcements 2020 Oct 9(44)
Similar articles in PubMed
DOI:
10.1128/MRA.00650-20
Division of the genus Chryseobacterium: Observation of discontinuities in amino acid identity values, a possible consequence of major extinction events, guides transfer of nine species to the genus Epilithonimonas , eleven species to the genus Kaistella , and three species to the genus Halpernia gen. nov., with description of Kaistella daneshvariae sp. nov. and Epilithonimonas vandammei sp. nov. derived from clinical specimens.
Ainsley C Nicholson
,
Christopher A Gulvik
,
Anne M Whitney
,
Ben W Humrighouse
,
Melissa E Bell
, Barry Holmes,
Arnie G Steigerwalt
,
Aaron Villarma
,
Mili Sheth
,
Dhwani Batra
,
Lori A Rowe
,
Mark Burroughs
,
Jessica C Pryor
, Jean-François Bernardet, Celia Hugo, Peter Kämpfer, Jeffrey D Newman, and
John R McQuiston
International journal of systematic and evolutionary microbiology 2020 Jan
Similar articles in PubMed
DOI:
10.1099/ijsem.0.003935
Vagococcus bubulae sp. nov., isolated from ground beef, and Vagococcus vulneris sp. nov., isolated from a human foot wound.
Patricia L Shewmaker
,
Anne M Whitney
,
Christopher A Gulvik
,
Ben W Humrighouse
,
Jarrett Gartin
,
Hercules Moura
,
John R Barr
, Edward R B Moore, Roger Karlsson, Tatiana C A Pinto, and Lucia M Teixeira
International journal of systematic and evolutionary microbiology 2019 May
Similar articles in PubMed
DOI:
10.1099/ijsem.0.003459
Streptacidiphilus bronchialis sp. nov., a ciprofloxacin-resistant bacterium from a human clinical specimen; reclassification of Streptomyces griseoplanus as Streptacidiphilus griseoplanus comb. nov. and emended description of the genus Streptacidiphilus.
Imen Nouioui, Hans-Peter Klenk, José Mariano Igual,
Christopher A Gulvik
,
Brent A Lasker
, and
John R McQuiston
International journal of systematic and evolutionary microbiology 2019 Apr 69(4) 1047-1056
Similar articles in PubMed
DOI:
10.1099/ijsem.0.003267
Complete Genome Sequence of Nocardia farcinica W6977 T Obtained by Combining Illumina and PacBio Reads.
Christopher A Gulvik
,
Robert A Arthur
,
Ben W Humrighouse
,
Dhwani Batra
,
Lori A Rowe
,
Brent A Lasker
, and
John R McQuiston
Microbiology resource announcements 2019 Jan (3)
Similar articles in PubMed
DOI:
10.1128/MRA.01373-18
A real-time multiplex PCR assay for detection of Elizabethkingia species, and differentiating between E. anophelis and E. meningoseptica .
Aubree J Kelly
,
Sandor E Karpathy
,
Christopher A Gulvik
,
Melissa L Ivey
,
Anne M Whitney
,
Melissa E Bell
,
Ainsley C Nicholson
,
Ben H Humrighouse
, and
John R McQuiston
Journal of clinical microbiology 2019 Jan
Similar articles in PubMed
DOI:
10.1128/JCM.01619-18
Genotypic differences between strains of the opportunistic pathogen Corynebacterium bovis isolated from humans, cows, and rodents.
Christopher Cheleuitte-Nieves,
Christopher A Gulvik
,
John R McQuiston
,
Ben W Humrighouse
,
Melissa E Bell
,
Aaron Villarma
, Vincent A Fischetti, Lars F Westblade, and Neil S Lipman
PloS one 2018 (12) e0209231
Similar articles in PubMed
DOI:
10.1371/journal.pone.0209231
Complete Genome Sequence of Streptacidiphilus sp. Strain 15-057A, Obtained from Bronchial Lavage Fluid.
Robert A Arthur
,
Christopher A Gulvik
,
Ben W Humrighouse
,
Brent A Lasker
,
Dhwani Batra
,
Lori A Rowe
, José Mariano Igual, Imen Nouioui, Hans-Peter Klenk, and
John R McQuiston
Microbiology resource announcements 2018 Nov 7(19)
Similar articles in PubMed
DOI:
10.1128/MRA.01127-18
Genomic Characterization and Copy Number Variation of Bacillus anthracis Plasmids pXO1 and pXO2 in a Historical Collection of 412 Strains.
Angela Pena-Gonzalez, Luis M Rodriguez-R,
Chung K Marston
,
Jay E Gee
,
Christopher A Gulvik
,
Cari B Kolton
,
Elke Saile
,
Michael Frace
,
Alex R Hoffmaster
, and Konstantinos T Konstantinidis
mSystems (4)
Similar articles in PubMed
DOI:
10.1128/mSystems.00065-18
Draft Reference Genome Sequence of Corynebacterium mastitidis 16-1433, Isolated From a Mouse
Christopher Cheleuitte-Nieves,
Christopher A Gulvik
,
Ben W Humrighouse
,
Melissa E Bell
,
Aaron Villarma
, Lars F Westblade, Neil S Lipman, Vincent A Fischetti, and
John R McQuiston
Genome announcements 2018 Feb 6(7)
Similar articles in PubMed
DOI:
10.1128/genomeA.00050-18
Twelve Complete Reference Genomes of Clinical Isolates in the Capnocytophaga Genus.
Aaron Villarma
,
Christopher A Gulvik
,
Lori A Rowe
,
Mili Sheth
,
Phalasy Juieng
,
Ainsley C Nicholson
,
Vladimir N Loparev
, and
John R McQuiston
Genome announcements 2017 Nov (44)
Similar articles in PubMed
DOI:
10.1128/genomeA.01186-17
Revisiting the taxonomy of the genus Elizabethkingia using whole-genome sequencing, optical mapping, and MALDI-TOF, along with proposal of three novel Elizabethkingia species: Elizabethkingia bruuniana sp. nov., Elizabethkingia ursingii sp. nov., and Elizabethkingia occulta sp. nov.
Ainsley C Nicholson
,
Christopher A Gulvik
,
Anne M Whitney
,
Ben W Humrighouse
,
James Graziano
,
Brian Emery
,
Melissa Bell
,
Vladimir Loparev
,
Phalasy Juieng
,
Jarrett Gartin
, Chantal Bizet, Dominique Clermont, Alexis Criscuolo, Sylvain Brisse, and
John R McQuiston
Antonie van Leeuwenhoek 2017 Aug
Similar articles in PubMed
DOI:
10.1007/s10482-017-0926-3
Phylogeography of Burkholderia pseudomallei Isolates, Western Hemisphere.
Jay E Gee
,
Christopher A Gulvik
,
Mindy G Elrod
,
Dhwani Batra
,
Lori A Rowe
,
Mili Sheth
, and
Alex R Hoffmaster
Emerging infectious diseases 2017 Jul 23(7) 1133-1138
Similar articles in PubMed
DOI:
10.3201/eid2307.161978
Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain.
Amandine Perrin, Elise Larsonneur,
Ainsley C Nicholson
, David J Edwards, Kristin M Gundlach,
Anne M Whitney
,
Christopher A Gulvik
,
Melissa E Bell
, Olaya Rendueles, Jean Cury, Perrine Hugon, Dominique Clermont, Vincent Enouf,
Vladimir Loparev
,
Phalasy Juieng
, Timothy Monson, David Warshauer, Lina I Elbadawi,
Maroya Spalding Walters
,
Matthew B Crist
,
Judith Noble-Wang
, Gwen Borlaug, Eduardo P C Rocha, Alexis Criscuolo, Marie Touchon, Jeffrey P Davis, Kathryn E Holt,
John R McQuiston
, and Sylvain Brisse
Nature communications 2017 May 15483
Similar articles in PubMed
DOI:
10.1038/ncomms15483
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Page last updated:
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