CDC-Authored Genomics and Precision Health Publications Database
Last data update: May 22, 2023. (Total: 4299 publications since 2011)
| Query Trace: all>>Eija Trees[CDC Author] |
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| Sequencing of Enteric Bacteria: Library Preparation Procedure Matters for Accurate Identification and Characterization.
Poates A , Truong J , Lindsey R , Griswold T , Williams-Newkirk AJ , Carleton H , Trees E . Foodborne Pathog Dis 2022 19 (8) 569-578 |
| The Use of Whole-Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States.
Stevens EL , Carleton HA , Beal J , Tillman GE , Lindsey RL , Lauer AC , Pightling A , Jarvis KG , Ottesen A , Ramachandran P , Hintz L , Katz LS , Folster JP , Whichard JM , Trees E , Timme RE , McDermott P , Wolpert B , Bazaco M , Zhao S , Lindley S , Bruce BB , Griffin PM , Brown E , Allard M , Tallent S , Irvin K , Hoffmann M , Wise M , Tauxe R , Gerner-Smidt P , Simmons M , Kissler B , Defibaugh-Chavez S , Klimke W , Agarwala R , Lindsay J , Cook K , Austerman SR , Goldman D , McGarry S , Hale KR , Dessai U , Musser SM , Braden C . J Food Prot 2022 85 (5) 755-772 |
| Comparison of four enzymatic library preparation kits for sequencing Shiga toxin-producing Escherichia coli for surveillance and outbreak detection.
Truong J , Poates A , Joung YJ , Sabol A , Griswold T , Williams-Newkirk AJ , Lindsey R , Trees E . J Microbiol Methods 2021 190 106329 |
| Assessment of Genetic Stability During Serial In Vitro Passage and In Vivo Carriage.
Sabol A , Joung YJ , VanTubbergen C , Ale J , Ribot EM , Trees E . Foodborne Pathog Dis 2021 18 (12) 894-901 |
| Shigella sonnei Outbreak Investigation During a Municipal Water Crisis-Genesee and Saginaw Counties, Michigan, 2016.
McClung RP , Karwowski M , Castillo C , McFadden J , Collier S , Collins J , Soehnlen M , Dietrich S , Trees E , Wilt G , Harrington C , Miller A , Adam E , Reses H , Cope J , Fullerton K , Hill V , Yoder J . Am J Public Health 2020 110 (6) e1-e8 |
| Interpretation of Whole-Genome Sequencing for Enteric Disease Surveillance and Outbreak Investigation.
Besser JM , Carleton HA , Trees E , Stroika SG , Hise K , Wise M , Gerner-Smidt P . Foodborne Pathog Dis 2019 16 (7) 504-512 |
| Metagenomic Approaches for Public Health Surveillance of Foodborne Infections: Opportunities and Challenges.
Carleton HA , Besser J , Williams-Newkirk AJ , Huang A , Trees E , Gerner-Smidt P . Foodborne Pathog Dis 2019 16 (7) 474-479 |
| Genome wide characterization of enterotoxigenic Escherichia coli serogroup O6 isolates from multiple outbreaks and sporadic infections from 1975-2016.
Pattabiraman V , Katz LS , Chen JC , McCullough AE , Trees E . PLoS One 2018 13 (12) e0208735 |
| Zoonotic Source Attribution of Salmonella enterica Serotype Typhimurium Using Genomic Surveillance Data, United States.
Zhang S , Li S , Gu W , denBakker H , Boxrud D , Taylor A , Roe C , Driebe E , Engelthaler DM , Allard M , Brown E , McDermott P , Zhao S , Bruce BB , Trees E , Fields PI , Deng X . Emerg Infect Dis 2019 25 (1) 82-91 |
| Notes from the Field: Investigation of an Outbreak of Salmonella Paratyphi B Variant L(+) tartrate + (Java) Associated with Ball Python Exposure - United States, 2017.
Krishnasamy V , Stevenson L , Koski L , Kellis M , Schroeder B , Sundararajan M , Ladd-Wilson S , Sampsel A , Mannell M , Classon A , Wagner D , Hise K , Carleton H , Trees E , Schlater L , Lantz K , Nichols M . MMWR Morb Mortal Wkly Rep 2018 67 (19) 562-563 |
| Protracted Outbreak of Salmonella Newport Infections Linked to Ground Beef: Possible Role of Dairy Cows - 21 States, 2016-2017.
Marshall KEH , Tewell M , Tecle S , Leeper M , Sinatra J , Kissler B , Fung A , Brown K , Wagner D , Trees E , Hise KB , Chaturvedi V , Schlater LK , Morningstar-Shaw BR , Whitlock L , Holt K , Becker K , Nichols M , Williams IT , Jhung M , Wise ME , Gieraltowski L . MMWR Morb Mortal Wkly Rep 2018 67 (15) 443-446 |
| Shiga Toxin-Producing E. coli Infections Associated with Flour.
Crowe Samuel J, Bottichio Lyndsay, Shade Lauren N, Whitney Brooke M, Corral Nereida, Melius Beth, Arends Katherine D, Donovan Danielle, Stone Jolianne, Allen Krisandra, Rosner Jessica, Beal Jennifer, Whitlock Laura, Blackstock Anna, Wetherington June, Newberry Lisa A, Schroeder Morgan N, Wagner Darlene, Trees Eija, Viazis Stelios, Wise Matthew E, Neil Karen P. The New England journal of medicine 2017 Nov 377(21) 2036-2043 . The New England journal of medicine 2017 Nov 377(21) 2036-2043 |
| High-Quality Draft Genome Sequences for Four Drug-Resistant or Outbreak-Associated Shigella sonnei Strains Generated with PacBio Sequencing and Whole-Genome Maps.
Lindsey Rebecca L, Batra Dhwani, Rowe Lori, N Loparev Vladimir, Juieng Phalasy, Garcia-Toledo Lisley, Bicknese Amelia, Stripling Devon, Martin Haley, Chen Jessica, Strockbine Nancy, Trees Eija.Genome announcements 2017 Aug (35) . Genome announcements 2017 Aug (35) |
| PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance.
Nadon Celine, Van Walle Ivo, Gerner-Smidt Peter, Campos Josefina, Chinen Isabel, Concepcion-Acevedo Jeniffer, Gilpin Brent, Smith Anthony M, Man Kam Kai, Perez Enrique, Trees Eija, Kubota Kristy, Takkinen Johanna, Nielsen Eva Møller, Carleton Heather, .Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2017 Jun (23) . Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2017 Jun (23) |
| Utility of Combining Whole Genome Sequencing with Traditional Investigational Methods To Solve Foodborne Outbreaks of Salmonella Infections Associated with Chicken: A New Tool for Tackling This Challenging Food Vehicle.
Crowe Samuel J, Green Alice, Hernandez Kimberly, Peralta Vi, Bottichio Lyndsay, Defibaugh-Chavez Stephanie, Douris Aphrodite, Gieraltowski Laura, Hise Kelley, La-Pham Karen, Neil Karen P, Simmons Mustafa, Tillman Glenn, Tolar Beth, Wagner Darlene, Wasilenko Jamie, Holt Kristin, Trees Eija, Wise Matthew E.Journal of food protection 2017 Mar 654-660 . Journal of food protection 2017 Mar 654-660 |
| Laboratory Investigation of <i>Salmonella enterica</i> serovar Poona Outbreak in California: Comparison of Pulsed-Field Gel Electrophoresis (PFGE) and Whole Genome Sequencing (WGS) Results.
Kozyreva Varvara K, Crandall John, Sabol Ashley, Poe Alyssa, Zhang Peng, Concepción-Acevedo Jeniffer, Schroeder Morgan N, Wagner Darlene, Higa Jeffrey, Trees Eija, Chaturvedi Vishnu.PLoS currents 2016 Nov . PLoS currents 2016 Nov |
| High-Quality Draft Genome Sequences for Five Non-O157 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing and Optical Maps.
Lindsey Rebecca L, Rowe Lori, Garcia-Toledo Lisley, Loparev Vladimir, Knipe Kristen, Stripling Devon, Martin Haley, Trees Eija, Juieng Phalasy, Batra Dhwani, Strockbine Nancy. Genome announcements 2016 4(3) . Genome announcements 2016 (3) |
| Implementation of Nationwide Real-time Whole-genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation.
Jackson Brendan R, Tarr Cheryl, Strain Errol, Jackson Kelly A, Conrad Amanda, Carleton Heather, Katz Lee S, Stroika Steven, Gould L Hannah, Mody Rajal K, Silk Benjamin J, Beal Jennifer, Chen Yi, Timme Ruth, Doyle Matthew, Fields Angela, Wise Matthew, Tillman Glenn, Defibaugh-Chavez Stephanie, Kucerova Zuzana, Sabol Ashley, Roache Katie, Trees Eija, Simmons Mustafa, Wasilenko Jamie, Kubota Kristy, Pouseele Hannes, Klimke William, Besser John, Brown Eric, Allard Marc, Gerner-Smidt Peter. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 63(3) 380-6 . Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 63(3) 380-6 |
| Multiple-locus variable-number tandem repeat analysis for strain discrimination of non-O157 Shiga toxin-producing Escherichia coli.
Timmons Chris, Trees Eija, Ribot Efrain M, Gerner-Smidt Peter, LaFon Patti, Im Sung, Ma Li Maria.Journal of microbiological methods 2016 Apr . Journal of microbiological methods 2016 Apr |
| Complete Genome Sequences of Two Shiga Toxin-Producing Escherichia coli Strains from Serotypes O119:H4 and O165:H25.
Lindsey Rebecca L, Knipe Kristen, Rowe Lori, Garcia-Toledo Lisley, Loparev Vladimir, Juieng Phalasy, Trees Eija, Strockbine Nancy, Stripling Devon, Gerner-Smidt Peter. Genome announcements 2015 3(6) . Genome announcements 2015 3(6) |
| Comparative analysis of subtyping methods against a whole-genome-sequencing standard for Salmonella enterica serotype Enteritidis.
Deng Xiangyu, Shariat Nikki, Driebe Elizabeth M, Roe Chandler C, Tolar Beth, Trees Eija, Keim Paul, Zhang Wei, Dudley Edward G, Fields Patricia I, Engelthaler David M. J. Clin. Microbiol. 2015 Jan 53(1) 212-8 . J. Clin. Microbiol. 2015 Jan 53(1) 212-8 |
| Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages.
Deng Xiangyu, Desai Prerak T, den Bakker Henk C, Mikoleit Matthew, Tolar Beth, Trees Eija, Hendriksen Rene S, Frye Jonathan G, Porwollik Steffen, Weimer Bart C, Wiedmann Martin, Weinstock George M, Fields Patricia I, McClelland Michael. Emerging Infect. Dis. 2014 Sep 20(9) 1481-9 . Emerging Infect. Dis. 2014 Sep 20(9) 1481-9 |
| Genome Sequences of 228 Shiga Toxin-Producing Escherichia coli Isolates and 12 Isolates Representing Other Diarrheagenic E. coli Pathotypes.
Trees Eija, Strockbine Nancy, Changayil Shankar, Ranganathan Satishkumar, Zhao Kun, Weil Ryan, MacCannell Duncan, Sabol Ashley, Schmidtke Amber, Martin Haley, Stripling Devon, Ribot Efrain M, Gerner-Smidt Peter. Genome Announc 2014 2(4) . Genome Announc 2014 2(4) |
| Draft Whole-Genome Sequences of Nine Non-O157 Shiga Toxin-Producing Escherichia coli Strains.
Lindsey Rebecca L, Trees Eija, Sammons Scott, Loparev Vladimir, Frace Mike, Strockbine Nancy, Sabol Ashley L, Sowers Evan, Stripling Devon, Martin Haley, Knipe Kristen, Rowe Lori, Gerner-Smidt Peter. Genome Announc 2014 2(4) . Genome Announc 2014 2(4) |
- Page last reviewed:Feb 1, 2023
- Page last updated:May 22, 2023
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