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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Sep 27, 2022. (Total: 4031 publications since 2011)
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Records 1-24 (of 24 Records)
Query Trace: all>>Eija Trees[CDC Author]
Sequencing of Enteric Bacteria: Library Preparation Procedure Matters for Accurate Identification and Characterization.
Angela Poates, Jenny Truong, Rebecca Lindsey, Taylor Griswold, Amanda J Williams-Newkirk, Heather Carleton, and Eija Trees
Foodborne pathogens and disease 2022
The Use of Whole-Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States.
Eric L Stevens, Heather A Carleton, Jennifer Beal, Glenn E Tillman, Rebecca L Lindsey, A C Lauer, Arthur Pightling, Karen G Jarvis, Andrea Ottesen, Padmini Ramachandran, Leslie Hintz, Lee S Katz, Jason P Folster, Jean M Whichard, Eija Trees, Ruth E Timme, Patrick McDermott, Beverly Wolpert, Michael Bazaco, Shaohua Zhao, Sabina Lindley, Beau B Bruce, Patricia M Griffin, Eric Brown, Marc Allard, Sandra Tallent, Kari Irvin, Maria Hoffmann, Matt Wise, Robert Tauxe, Peter Gerner-Smidt, Mustafa Simmons, Bonnie Kissler, Stephanie Defibaugh-Chavez, William Klimke, Richa Agarwala, James Lindsay, Kimberly Cook, Suelee Robbe Austerman, David Goldman, Sherri McGarry, Kis Robertson Hale, Uday Dessai, Steven M Musser, and Chris Braden
Journal of food protection 2022
Comparison of four enzymatic library preparation kits for sequencing Shiga toxin-producing Escherichia coli for surveillance and outbreak detection.
Jenny Truong, Angela Poates, Yoo Jin Joung, Ashley Sabol, Taylor Griswold, Amanda J Williams-Newkirk, Rebecca Lindsey, and Eija Trees
Journal of microbiological methods 2021 106329
Assessment of Genetic Stability During Serial In Vitro Passage and In Vivo Carriage.
Ashley Sabol, Yoo Jin Joung, Christine VanTubbergen, Jerdie Ale, Efrain M Ribot, and Eija Trees
Foodborne pathogens and disease 2021
Shigella sonnei Outbreak Investigation During a Municipal Water Crisis-Genesee and Saginaw Counties, Michigan, 2016.
R Paul McClung, Mateusz Karwowski, Caroline Castillo, Jevon McFadden, Sarah Collier, Jim Collins, Marty Soehnlen, Stephen Dietrich, Eija Trees, Grete Wilt, Christina Harrington, Ashley Miller, Elizabeth Adam, Hannah Reses, Jennifer Cope, Katie Fullerton, Vincent Hill, and Jonathan Yoder
American journal of public health 2020 Apr e1-e8
Protracted Outbreak of Salmonella Newport Infections Linked to Ground Beef: Possible Role of Dairy Cows - 21 States, 2016-2017.
Katherine E Heiman Marshall, Mackenzie Tewell, Selam Tecle, Molly Leeper, Jennifer Sinatra, Bonnie Kissler, Adrienne Fung, Kerri Brown, Darlene Wagner, Eija Trees, Kelley B Hise, Vishnu Chaturvedi, Linda K Schlater, Brenda R Morningstar-Shaw, Laura Whitlock, Kristin Holt, Karen Becker, Megin Nichols, Ian T Williams, Michael Jhung, Matthew E Wise, and Laura Gieraltowski
MMWR. Morbidity and mortality weekly report 2018 Apr 67(15) 443-446
Interpretation of Whole-Genome Sequencing for Enteric Disease Surveillance and Outbreak Investigation.
John M Besser, Heather A Carleton, Eija Trees, Steven G Stroika, Kelley Hise, Matthew Wise, and Peter Gerner-Smidt
Foodborne pathogens and disease 2019 Jun
Metagenomic Approaches for Public Health Surveillance of Foodborne Infections: Opportunities and Challenges.
Heather A Carleton, John Besser, Amanda J Williams-Newkirk, Andrew Huang, Eija Trees, and Peter Gerner-Smidt
Foodborne pathogens and disease 2019 Jun
Implementation of Nationwide Real-time Whole-genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation.
Brendan R Jackson, Cheryl Tarr, Errol Strain, Kelly A Jackson, Amanda Conrad, Heather Carleton, Lee S Katz, Steven Stroika, L Hannah Gould, Rajal K Mody, Benjamin J Silk, Jennifer Beal, Yi Chen, Ruth Timme, Matthew Doyle, Angela Fields, Matthew Wise, Glenn Tillman, Stephanie Defibaugh-Chavez, Zuzana Kucerova, Ashley Sabol, Katie Roache, Eija Trees, Mustafa Simmons, Jamie Wasilenko, Kristy Kubota, Hannes Pouseele, William Klimke, John Besser, Eric Brown, Marc Allard, and Peter Gerner-Smidt
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 63(3) 380-6
Zoonotic Source Attribution of Salmonella enterica Serotype Typhimurium Using Genomic Surveillance Data, United States.
Shaokang Zhang, Shaoting Li, Weidong Gu, Henk den Bakker, Dave Boxrud, Angie Taylor, Chandler Roe, Elizabeth Driebe, David M Engelthaler, Marc Allard, Eric Brown, Patrick McDermott, Shaohua Zhao, Beau B Bruce, Eija Trees, Patricia I Fields, and Xiangyu Deng
Emerging infectious diseases 2019 Jan 25(1) 82-91
Genome wide characterization of enterotoxigenic Escherichia coli serogroup O6 isolates from multiple outbreaks and sporadic infections from 1975-2016.
Vaishnavi Pattabiraman, Lee S Katz, Jessica C Chen, Andre E McCullough, and Eija Trees
PloS one 2018 13(12) e0208735
Notes from the Field: Investigation of an Outbreak of Salmonella Paratyphi B Variant L(+) tartrate + (Java) Associated with Ball Python Exposure - United States, 2017.
Vikram Krishnasamy, Lauren Stevenson, Lia Koski, Marilee Kellis, Betsy Schroeder, Madhura Sundararajan, Stephen Ladd-Wilson, Ashley Sampsel, Mike Mannell, Andrew Classon, Darlene Wagner, Kelley Hise, Heather Carleton, Eija Trees, Linda Schlater, Kristina Lantz, and Megin Nichols
MMWR. Morbidity and mortality weekly report 2018 May (19) 562-563
Shiga Toxin-Producing E. coli Infections Associated with Flour.
Samuel J Crowe, Lyndsay Bottichio, Lauren N Shade, Brooke M Whitney, Nereida Corral, Beth Melius, Katherine D Arends, Danielle Donovan, Jolianne Stone, Krisandra Allen, Jessica Rosner, Jennifer Beal, Laura Whitlock, Anna Blackstock, June Wetherington, Lisa A Newberry, Morgan N Schroeder, Darlene Wagner, Eija Trees, Stelios Viazis, Matthew E Wise, and Karen P Neil
The New England journal of medicine 2017 Nov 377(21) 2036-2043
High-Quality Draft Genome Sequences for Four Drug-Resistant or Outbreak-Associated Shigella sonnei Strains Generated with PacBio Sequencing and Whole-Genome Maps.
Rebecca L Lindsey, Dhwani Batra, Lori Rowe, Vladimir N Loparev, Phalasy Juieng, Lisley Garcia-Toledo, Amelia Bicknese, Devon Stripling, Haley Martin, Jessica Chen, Nancy Strockbine, and Eija Trees
Genome announcements 2017 Aug (35)
PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance.
Celine Nadon, Ivo Van Walle, Peter Gerner-Smidt, Josefina Campos, Isabel Chinen, Jeniffer Concepcion-Acevedo, Brent Gilpin, Anthony M Smith, Kai Man Kam, Enrique Perez, Eija Trees, Kristy Kubota, Johanna Takkinen, Eva Møller Nielsen, Heather Carleton, and
Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2017 Jun (23)
Utility of Combining Whole Genome Sequencing with Traditional Investigational Methods To Solve Foodborne Outbreaks of Salmonella Infections Associated with Chicken: A New Tool for Tackling This Challenging Food Vehicle.
Samuel J Crowe, Alice Green, Kimberly Hernandez, Vi Peralta, Lyndsay Bottichio, Stephanie Defibaugh-Chavez, Aphrodite Douris, Laura Gieraltowski, Kelley Hise, Karen La-Pham, Karen P Neil, Mustafa Simmons, Glenn Tillman, Beth Tolar, Darlene Wagner, Jamie Wasilenko, Kristin Holt, Eija Trees, and Matthew E Wise
Journal of food protection 2017 Mar 654-660
Laboratory Investigation of <i>Salmonella enterica</i> serovar Poona Outbreak in California: Comparison of Pulsed-Field Gel Electrophoresis (PFGE) and Whole Genome Sequencing (WGS) Results.
Varvara K Kozyreva, John Crandall, Ashley Sabol, Alyssa Poe, Peng Zhang, Jeniffer Concepción-Acevedo, Morgan N Schroeder, Darlene Wagner, Jeffrey Higa, Eija Trees, and Vishnu Chaturvedi
PLoS currents 2016 Nov
High-Quality Draft Genome Sequences for Five Non-O157 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing and Optical Maps.
Rebecca L Lindsey, Lori Rowe, Lisley Garcia-Toledo, Vladimir Loparev, Kristen Knipe, Devon Stripling, Haley Martin, Eija Trees, Phalasy Juieng, Dhwani Batra, and Nancy Strockbine
Genome announcements 2016 (3)
Multiple-locus variable-number tandem repeat analysis for strain discrimination of non-O157 Shiga toxin-producing Escherichia coli.
Chris Timmons, Eija Trees, Efrain M Ribot, Peter Gerner-Smidt, Patti LaFon, Sung Im, and Li Maria Ma
Journal of microbiological methods 2016 Apr
Complete Genome Sequences of Two Shiga Toxin-Producing Escherichia coli Strains from Serotypes O119:H4 and O165:H25.
Rebecca L Lindsey, Kristen Knipe, Lori Rowe, Lisley Garcia-Toledo, Vladimir Loparev, Phalasy Juieng, Eija Trees, Nancy Strockbine, Devon Stripling, and Peter Gerner-Smidt
Genome announcements 2015 3(6)
Genome Sequences of 228 Shiga Toxin-Producing Escherichia coli Isolates and 12 Isolates Representing Other Diarrheagenic E. coli Pathotypes.
Eija Trees, Nancy Strockbine, Shankar Changayil, Satishkumar Ranganathan, Kun Zhao, Ryan Weil, Duncan MacCannell, Ashley Sabol, Amber Schmidtke, Haley Martin, Devon Stripling, Efrain M Ribot, and Peter Gerner-Smidt
Genome Announc 2014 2(4)
Draft Whole-Genome Sequences of Nine Non-O157 Shiga Toxin-Producing Escherichia coli Strains.
Rebecca L Lindsey, Eija Trees, Scott Sammons, Vladimir Loparev, Mike Frace, Nancy Strockbine, Ashley L Sabol, Evan Sowers, Devon Stripling, Haley Martin, Kristen Knipe, Lori Rowe, and Peter Gerner-Smidt
Genome Announc 2014 2(4)
Comparative analysis of subtyping methods against a whole-genome-sequencing standard for Salmonella enterica serotype Enteritidis.
Xiangyu Deng, Nikki Shariat, Elizabeth M Driebe, Chandler C Roe, Beth Tolar, Eija Trees, Paul Keim, Wei Zhang, Edward G Dudley, Patricia I Fields, and David M Engelthaler
J. Clin. Microbiol. 2015 Jan 53(1) 212-8
Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages.
Xiangyu Deng, Prerak T Desai, Henk C den Bakker, Matthew Mikoleit, Beth Tolar, Eija Trees, Rene S Hendriksen, Jonathan G Frye, Steffen Porwollik, Bart C Weimer, Martin Wiedmann, George M Weinstock, Patricia I Fields, and Michael McClelland
Emerging Infect. Dis. 2014 Sep 20(9) 1481-9
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