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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Oct 10, 2019. (Total: 2648 publications since 2011)
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Records 1-39 (of 39 Records)
Query Trace: all>>Jonas M Winchell[CDC Author]
Comparison of respiratory pathogen yields from Nasopharyngeal/Oropharyngeal swabs and sputum specimens collected from hospitalized adults in rural Western Kenya.
Bryan O Nyawanda, Henry N Njuguna, Clayton O Onyango, Caroline Makokha, Shirley Lidechi, Barry Fields, Jonas M Winchell, Jim S Katieno, Jeremiah Nyaundi, Fredrick Ade, Gideon O Emukule, Joshua A Mott, Nancy Otieno, Marc-Alain Widdowson, and Sandra S Chaves
Scientific reports 2019 Aug (1) 11237
Surveillance for incidence and etiology of early-onset neonatal sepsis in Soweto, South Africa.
Sithembiso C Velaphi, Matthew Westercamp, Malefu Moleleki, Tracy Pondo, Ziyaad Dangor, Nicole Wolter, Anne von Gottberg, Nong Shang, Alicia Demirjian, Jonas M Winchell, Maureen H Diaz, Firdose Nakwa, Grace Okudo, Jeannette Wadula, Clare Cutland, Stephanie J Schrag, and Shabir A Madhi
PloS one 2019 14(4) e0214077
Culture of Clinical Specimens Reveals Extensive Diversity of Legionella pneumophila Strains in Arizona.
Brian H Raphael, Trung Huynh, Ellen Brown, Jessica C Smith, Irene Ruberto, Linda Getsinger, Stacy White, and Jonas M Winchell
mSphere 2019 Feb 4(1)
Genomic heterogeneity differentiates clinical and environmental subgroups of Legionella pneumophila sequence type 1.
Jeffrey W Mercante, Jason A Caravas, Maliha K Ishaq, Natalia A Kozak-Muiznieks, Brian H Raphael, and Jonas M Winchell
PloS one 2018 13(10) e0206110
Causes and incidence of community-acquired serious infections among young children in south Asia (ANISA): an observational cohort study.
Samir K Saha, Stephanie J Schrag, Shams El Arifeen, Luke C Mullany, Mohammad Shahidul Islam, Nong Shang, Shamim A Qazi, Anita K M Zaidi, Zulfiqar A Bhutta, Anuradha Bose, Pinaki Panigrahi, Sajid B Soofi, Nicholas E Connor, Dipak K Mitra, Rita Isaac, Jonas M Winchell, Melissa L Arvay, Maksuda Islam, Yasir Shafiq, Imran Nisar, Benazir Baloch, Furqan Kabir, Murtaza Ali, Maureen H Diaz, Radhanath Satpathy, Pritish Nanda, Bijaya K Padhi, Sailajanandan Parida, Aneeta Hotwani, M Hasanuzzaman, Sheraz Ahmed, Mohammad Belal Hossain, Shabina Ariff, Imran Ahmed, Syed Mamun Ibne Moin, Arif Mahmud, Jessica L Waller, Iftekhar Rafiqullah, Mohammad A Quaiyum, Nazma Begum, Veeraraghavan Balaji, Jasmin Halen, A S M Nawshad Uddin Ahmed, Martin W Weber, Davidson H Hamer, Patricia L Hibberd, Qazi Sadeq-Ur Rahman, Venkat Raghava Mogan, Tanvir Hossain, Lesley McGee, Shalini Anandan, Anran Liu, Kalpana Panigrahi, Asha Mary Abraham, and Abdullah H Baqui
Lancet (London, England) 2018 Jul 392(10142) 145-159
Epidemiology and Molecular Identification and Characterization of Mycoplasma pneumoniae, South Africa, 2012-2015.
Maimuna Carrim, Nicole Wolter, Alvaro J Benitez, Stefano Tempia, Mignon du Plessis, Sibongile Walaza, Fahima Moosa, Maureen H Diaz, Bernard J Wolff, Florette K Treurnicht, Orienka Hellferscee, Halima Dawood, Ebrahim Variava, Cheryl Cohen, Jonas M Winchell, and Anne von Gottberg
Emerging infectious diseases 2018 Mar 24(3) 506-513
Comparative genome analysis reveals a complex population structure of Legionella pneumophila subspecies.
Natalia A Kozak-Muiznieks, Shatavia S Morrison, Jeffrey W Mercante, Maliha K Ishaq, Taccara Johnson, Jason Caravas, Claressa E Lucas, Ellen Brown, Brian H Raphael, and Jonas M Winchell
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2018 Feb
Development of a multiplex TaqMan real-time PCR assay for the detection of Chlamydia psittaci and Chlamydia pneumoniae in human clinical specimens.
Bernard J Wolff, Shatavia S Morrison, and Jonas M Winchell
Diagnostic microbiology and infectious disease 2017 Nov
Mycoplasma hominis Infections Transmitted Through Amniotic Tissue Product.
Shannon A Novosad, Sridhar V Basavaraju, Pallavi Annambhotla, Marika Mohr, Alison Laufer Halpin, Linda Foy, Richard Chmielewski, Jonas M Winchell, Alvaro J Benitez, Shatavia S Morrison, Taccara Johnson, Donna M Crabb, Amy E Ratliff, Ken Waites, and Matthew J Kuehnert
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 Oct 65(7) 1152-1158
Molecular characterization of Mycoplasma pneumoniae infections in two rural populations of Thailand from 2009-2012.
Toni Whistler, Pongpun Sawatwong, Maureen H Diaz, Alvaro J Benitez, Bernard J Wolff, Patranuch Sapchookul, Somsak Thamthitiwat, and Jonas M Winchell
Journal of clinical microbiology 2017 May
Influence of Antibiotics on the Detection of Bacteria by Culture-Based and Culture-Independent Diagnostic Tests in Patients Hospitalized With Community-Acquired Pneumonia.
Aaron M Harris, Anna M Bramley, Seema Jain, Sandra R Arnold, Krow Ampofo, Wesley H Self, Derek J Williams, Evan J Anderson, Carlos G Grijalva, Jonathan A McCullers, Andrew T Pavia, Richard G Wunderink, Kathryn M Edwards, Jonas M Winchell, and Lauri A Hicks
Open forum infectious diseases 2017 (1) ofx014
Comprehensive bioinformatics analysis of Mycoplasma pneumoniae genomes to investigate underlying population structure and type-specific determinants.
Maureen H Diaz, Heta P Desai, Shatavia S Morrison, Alvaro J Benitez, Bernard J Wolff, Jason Caravas, Timothy D Read, Deborah Dean, and Jonas M Winchell
PloS one 2017 12(4) e0174701
Complete Genome Sequence of Mycoplasma pneumoniae Type 2 Reference Strain FH Using Single-Molecule Real-Time Sequencing Technology.
Heta P Desai, Shatavia S Morrison, Maureen H Diaz, Alvaro J Benitez, Bernard J Wolff, and Jonas M Winchell
Genome announcements 2017 Feb (8)
Complete Genome Sequences of Legionella pneumophila subsp. fraseri Strains Detroit-1 and Dallas 1E.
Brian H Raphael, Natalia A Kozak-Muiznieks, Shatavia S Morrison, Jeffrey W Mercante, and Jonas M Winchell
Genome announcements 2017 Feb (5)
Epidemiology and Molecular Characteristics of Mycoplasma pneumoniae During an Outbreak of M. pneumoniae-Associated Stevens-Johnson Syndrome.
Louise K Francois Watkins, Daniel Olson, Maureen H Diaz, Xia Lin, Alicia Demirjian, Alvaro J Benitez, Jonas M Winchell, Christine C Robinson, Kirk A Bol, Mary P Glodé, Samuel R Dominguez, Lisa A Miller, and Preeta K Kutty
The Pediatric infectious disease journal 2017 Jan
Development of a multiplex taqMan real-time PCR assay for typing of Mycoplasma pneumoniae based on type-specific indels identified through whole genome sequencing.
Bernard J Wolff, Alvaro J Benitez, Heta P Desai, Shatavia S Morrison, Maureen H Diaz, and Jonas M Winchell
Diagnostic microbiology and infectious disease 2016 Nov
Genomic Analysis Reveals Novel Diversity among the 1976 Philadelphia Legionnaires' Disease Outbreak Isolates and Additional ST36 Strains.
Jeffrey W Mercante, Shatavia S Morrison, Heta P Desai, Brian H Raphael, and Jonas M Winchell
PloS one 11(9) e0164074
Complete Genome Sequences of the Historical Legionella pneumophila Strains OLDA and Pontiac.
Jeffrey W Mercante, Shatavia S Morrison, Brian H Raphael, and Jonas M Winchell
Genome announcements 2016 (4)
Complete Genome Sequences of Three Outbreak-Associated Legionella pneumophila Isolates.
Shatavia S Morrison, Heta P Desai, Jeffrey W Mercante, Pascal Lapierre, Brian H Raphael, Kimberlee Musser, and Jonas M Winchell
Genome announcements 2016 (4)
Identification of Bacterial and Viral Codetections With Mycoplasma pneumoniae Using the TaqMan Array Card in Patients Hospitalized With Community-Acquired Pneumonia.
Maureen H Diaz, Kristen E Cross, Alvaro J Benitez, Lauri A Hicks, Preeta Kutty, Anna M Bramley, James D Chappell, Weston Hymas, Anami Patel, Chao Qi, Derek J Williams, Sandra R Arnold, Krow Ampofo, Wesley H Self, Carlos G Grijalva, Evan J Anderson, Jonathan A McCullers, Andrew T Pavia, Richard G Wunderink, Kathryn M Edwards, Seema Jain, and Jonas M Winchell
Open forum infectious diseases 2016 Mar (2) ofw071
Three Genome Sequences of Legionella pneumophila subsp. pascullei Associated with Colonization of a Health Care Facility.
Natalia A Kozak-Muiznieks, Shatavia S Morrison, Scott Sammons, Lori A Rowe, Mili Sheth, Michael Frace, Claressa E Lucas, Vladimir N Loparev, Brian H Raphael, and Jonas M Winchell
Genome announcements 2016 (3)
Laboratory Methods for Determining Etiology of Neonatal Infection at Population-based Sites in South Asia: The ANISA Study.
Samir K Saha, Mohammad Shahidul Islam, Shahida M Qureshi, Belal Hossain, Maksuda Islam, Anita K Zaidi, Joyanta K Modak, Hasan M Al-Emran, Maureen H Diaz, Lesley McGee, Jonas M Winchell, and
The Pediatric infectious disease journal 2016 May (5 Suppl 1) S16-22
Genomic resolution of outbreak-associated Legionella pneumophila serogroup 1 isolates from New York State.
Brian H Raphael, Deborah J Baker, Elizabeth Nazarian, Pascal Lapierre, Dianna Bopp, Natalia A Kozak-Muiznieks, Shatavia S Morrison, Claressa E Lucas, Jeffrey W Mercante, Kimberlee A Musser, and Jonas M Winchell
Applied and environmental microbiology 2016 Apr
The Evolution of Advanced Molecular Diagnostics for the Detection and Characterization of Mycoplasma pneumoniae.
Maureen H Diaz, and Jonas M Winchell
Frontiers in microbiology 2016 232
Multistate Outbreak of Respiratory Infections among Unaccompanied Children, June-July 2014.
Sara Tomczyk, Carmen S Arriola, Bernard Beall, Alvaro Benitez, Stephen R Benoit, LaShondra Berman, Joseph Bresee, Maria da Gloria Carvalho, Amanda Cohn, Kristen Cross, Maureen H Diaz, Louise K Francois Watkins, Ryan Gierke, Jose E Hagan, Aaron M Harris, Seema Jain, Lindsay Kim, Miwako Kobayashi, Stephen Lindstrom, Lesley McGee, Meredith McMorrow, Benjamin L Metcalf, Matthew R Moore, Iaci Moura, W Allan Nix, Edith Nyangoma, M Steven Oberste, Sonja J Olsen, Fabiana Pimenta, Christina Socias, Kathleen Thurman, Jessica Waller, Stephen H Waterman, Matthew Westercamp, Melinda Wharton, Cynthia G Whitney, Jonas M Winchell, Bernard Wolff, and Curi Kim
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Mar
Rapid detection and typing of pathogenic nonpneumophila Legionella spp. isolates using a multiplex real-time PCR assay.
Alvaro J Benitez, and Jonas M Winchell
Diagnostic microbiology and infectious disease 2016 Apr (4) 298-303
Comparative Analytical Evaluation of the Respiratory TaqMan Array Card with Real-Time PCR and Commercial Multi-Pathogen Assays.
John J Harvey, Stephanie Chester, Stephen A Burke, Marisela Ansbro, Tricia Aden, Remedios Gose, Rebecca Sciulli, Jing Bai, Lucy DesJardin, Jeffrey L Benfer, Joshua Hall, Sandra Smole, Kimberly Doan, Michael D Popowich, Kirsten St George, Tammy Quinlan, Tanya A Halse, Zhen Li, Ailyn C Pérez-Osorio, William A Glover, Denny Russell, Erik Reisdorf, Thomas Whyte, Brett Whitaker, Cynthia Hatcher, Velusamy Srinivasan, Kathleen Tatti, Maria Lucia Tondella, Xin Wang, Jonas M Winchell, Leonard W Mayer, Daniel Jernigan, and Alison C Mawle
Journal of virological methods 2015 Nov
Molecular Detection and Characterization of Mycoplasma pneumoniae Among Patients Hospitalized With Community-Acquired Pneumonia in the United States.
Maureen H Diaz, Alvaro J Benitez, Kristen E Cross, Lauri A Hicks, Preeta Kutty, Anna M Bramley, James D Chappell, Weston Hymas, Anami Patel, Chao Qi, Derek J Williams, Sandra R Arnold, Krow Ampofo, Wesley H Self, Carlos G Grijalva, Evan J Anderson, Jonathan A McCullers, Andrew T Pavia, Richard G Wunderink, Kathryn M Edwards, Seema Jain, and Jonas M Winchell
Open forum infectious diseases 2015 Sep 2(3) ofv106
Isothermal detection of Mycoplasma pneumoniae directly from respiratory clinical specimens.
Brianna L Petrone, Bernard J Wolff, Alexandra A DeLaney, Maureen H Diaz, and Jonas M Winchell
J. Clin. Microbiol. 2015 Jul 15.
Specificity and Strain-Typing Capabilities of Nanorod Array-Surface Enhanced Raman Spectroscopy for Mycoplasma pneumoniae Detection.
Kelley C Henderson, Alvaro J Benitez, Amy E Ratliff, Donna M Crabb, Edward S Sheppard, Jonas M Winchell, Richard A Dluhy, Ken B Waites, T Prescott Atkinson, and Duncan C Krause
PLoS ONE 2015 10(6) e0131831
Chlamydia psittaci Comparative Genomics Reveals Intraspecies Variations in the Putative Outer Membrane and Type III Secretion System Genes.
Bernard J Wolff, Shatavia S Morrison, Denise Pesti, Satishkumar Ranganathan Ganakammal, Ganesh Srinivasamoorthy, Shankar Changayil, M Ryan Weil, Duncan MacCannell, Lori Rowe, Michael Frace, Branson W Ritchie, Deborah Dean, and Jonas M Winchell
Microbiology (Reading, Engl.) 2015 Apr 17.
Draft Genome Sequence of Legionella pneumophila D-5864, a Serogroup 6 Strain.
Shatavia S Morrison, Natalia A Kozak-Muiznieks, Scott Sammons, Lori A Rowe, Mike Frace, and Jonas M Winchell
Genome Announc 2015 3(1)
Investigations of Mycoplasma pneumoniae infections in the United States: trends in molecular typing and macrolide resistance from 2006 to 2013.
Maureen H Diaz, Alvaro J Benitez, and Jonas M Winchell
J. Clin. Microbiol. 2015 Jan 53(1) 124-30
Detection and characterization of Mycoplasma pneumoniae during an outbreak of respiratory illness at a university.
Jessica L Waller, Maureen H Diaz, Brianna L Petrone, Alvaro J Benitez, Bernard J Wolff, Laura Edison, Melissa Tobin-D'Angelo, Ashley Moore, Audrey Martyn, Hope Dishman, Cherie L Drenzek, Kim Turner, Lauri A Hicks, and Jonas M Winchell
Journal of clinical microbiology 2014 Mar (3) 849-53
Prevalence of sequence types among clinical and environmental isolates of Legionella pneumophila serogroup 1 in the United States from 1982 to 2012.
Natalia A Kozak-Muiznieks, Claressa E Lucas, Ellen Brown, Tracy Pondo, Thomas H Taylor, Michael Frace, Diane Miskowski, and Jonas M Winchell
J. Clin. Microbiol. 2014 Jan 52(1) 201-11
Clinical application of a multiplex real-time PCR assay for simultaneous detection of Legionella species, Legionella pneumophila, and Legionella pneumophila serogroup 1.
Alvaro J Benitez, and Jonas M Winchell
J. Clin. Microbiol. 2013 Jan 51(1) 348-51
Multilocus variable-number tandem-repeat analysis of Mycoplasma pneumoniae clinical isolates from 1962 to the present: a retrospective study.
Alvaro J Benitez, Maureen H Diaz, Bernard J Wolff, Guillermo Pimentel, M Kariuki Njenga, Alejandra Estevez, and Jonas M Winchell
J. Clin. Microbiol. 2012 Nov 50(11) 3620-6
Development of a novel genus-specific real-time PCR assay for detection and differentiation of Bartonella species and genotypes.
Maureen H Diaz, Ying Bai, Lile Malania, Jonas M Winchell, and Michael Y Kosoy
J. Clin. Microbiol. 2012 May 50(5) 1645-9
Comparison of real-time PCR and a microimmunofluorescence serological assay for detection of chlamydophila pneumoniae infection in an outbreak investigation.
Alvaro J Benitez, Kathleen A Thurman, Maureen H Diaz, Laura Conklin, Newton E Kendig, and Jonas M Winchell
J. Clin. Microbiol. 2012 Jan 50(1) 151-3
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