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Public Health Genomics and Precision Health Knowledge Base (v8.2)
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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB
CDC-Authored Genomics and Precision Health Publications Database
Last data update: Feb 03, 2023
. (Total: 4188 publications since 2011)
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Records 1-28 (of 28 Records)
Query Trace:
all>>David S Campo[CDC Author]
A Novel Information-Theory-Based Genetic Distance That Approximates Phenotypic Differences.
David S Campo
, Alexander Mosa, and
Yury Khudyakov
Journal of computational biology : a journal of computational molecular cell biology 2023
Similar articles in PubMed
DOI:
10.1089/cmb.2022.0395
Polymorphic Molecular Signatures in Variable Regions of the Plasmodium falciparum var2csa DBL3x Domain Are Associated with Virulence in Placental Malaria.
Eldin Talundzic
, Stephen Scott, Simon O Owino,
David S Campo
,
Naomi W Lucchi
,
Venkatachalam Udhayakumar
, Julie M Moore, and David S Peterson
Pathogens (Basel, Switzerland) 2022 11(5)
Similar articles in PubMed
DOI:
10.3390/pathogens11050520
Primary case inference in viral outbreaks through analysis of intra-host variant population.
J Walker Gussler,
David S Campo
,
Zoya Dimitrova
, Pavel Skums, and
Yury Khudyakov
BMC bioinformatics 2022 23(1) 62
Similar articles in PubMed
DOI:
10.1186/s12859-022-04585-2
Convex hulls in hamming space enable efficient search for similarity and clustering of genomic sequences.
David S Campo
, and
Yury Khudyakov
BMC bioinformatics 2020 Dec 21(Suppl 18) 482
Similar articles in PubMed
DOI:
10.1186/s12859-020-03811-z
Accurate spatiotemporal mapping of drug overdose deaths by machine learning of drug-related web-searches.
David S Campo
, Joseph W Gussler,
Amanda Sue
, Pavel Skums, and
Yury Khudyakov
PloS one 2020 15(12) e0243622
Similar articles in PubMed
DOI:
10.1371/journal.pone.0243622
Machine learning can accelerate discovery and application of cyber-molecular cancer diagnostics.
David S Campo
, and
Yury Khudyakov
Journal of medical artificial intelligence 2020 Mar 3(7)
Similar articles in PubMed
DOI:
10.21037/jmai.2020.01.01
Entropy of mitochondrial DNA circulating in blood is associated with hepatocellular carcinoma.
David S Campo
, Vishal Nayak, Ganesh Srinivasamoorthy, and
Yury Khudyakov
BMC medical genomics 2019 Jun 12(Suppl 4) 74
Similar articles in PubMed
DOI:
10.1186/s12920-019-0506-7
Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants.
Viachaslau Tsyvina,
David S Campo
,
Seth Sims
, Alex Zelikovsky,
Yury Khudyakov
, and
Pavel Skums
BMC bioinformatics 2018 Oct (Suppl 11) 360
Similar articles in PubMed
DOI:
10.1186/s12859-018-2333-9
Automated quality control for a molecular surveillance system.
Seth Sims, Atkinson G Longmire,
David S Campo
,
Sumathi Ramachandran
,
Magdalena Medrzycki
,
Lilia Ganova-Raeva
,
Yulin Lin
,
Amanda Sue
,
Hong Thai
, Alexander Zelikovsky, and
Yury Khudyakov
BMC bioinformatics 2018 Oct (Suppl 11) 358
Similar articles in PubMed
DOI:
10.1186/s12859-018-2329-5
Transmissibility of intra-host hepatitis C virus variants.
David S Campo
, June Zhang,
Sumathi Ramachandran
, and
Yury Khudyakov
BMC genomics 2017 Dec (Suppl 10) 881
Similar articles in PubMed
DOI:
10.1186/s12864-017-4267-4
GHOST: global hepatitis outbreak and surveillance technology.
Atkinson G Longmire
,
Seth Sims
,
Inna Rytsareva
,
David S Campo
,
Pavel Skums
,
Zoya Dimitrova
,
Sumathi Ramachandran
,
Magdalena Medrzycki
,
Hong Thai
,
Lilia Ganova-Raeva
,
Yulin Lin
,
Lili T Punkova
,
Amanda Sue
,
Massimo Mirabito
,
Silver Wang
,
Robin Tracy
,
Victor Bolet
,
Thom Sukalac
,
Chris Lynberg
, and
Yury Khudyakov
BMC genomics 2017 Dec (Suppl 10) 916
Similar articles in PubMed
DOI:
10.1186/s12864-017-4268-3
Efficient detection of viral transmissions with Next-Generation Sequencing data.
Inna Rytsareva
,
David S Campo
,
Yueli Zheng
,
Seth Sims
, Sharma V Thankachan, Cansu Tetik, Jain Chirag, Sriram P Chockalingam,
Amanda Sue
, Srinivas Aluru, and
Yury Khudyakov
BMC genomics 2017 May (Suppl 4) 372
Similar articles in PubMed
DOI:
10.1186/s12864-017-3732-4
Molecular epidemiology of hepatitis B virus infection in Tanzania.
Joseph C Forbi
, Michael Dillon,
Michael A Purdy
,
Bakary S Drammeh
,
Alexandra Tejada-Strop
,
Daniel McGovern
,
Guo-Liang Xia
,
Yulin Lin
,
Lilia M Ganova-Raeva
,
David S Campo
,
Hong Thai
,
Gilberto Vaughan
, Dunstan Haule, Regina P Kutaga, Sridhar V Basavaraju,
Saleem Kamili
, and
Yury E Khudyakov
The Journal of general virology 2017 May
Similar articles in PubMed
DOI:
10.1099/jgv.0.000776
Increased Mitochondrial Genetic Diversity in Persons Infected With Hepatitis C Virus.
David S Campo
,
Ha-Jung Roh
, Brian L Pearlman, Daniel S Fierer,
Sumathi Ramachandran
,
Gilberto Vaughan
, Andrew Hinds,
Zoya Dimitrova
,
Pavel Skums
, and
Yury Khudyakov
Cellular and molecular gastroenterology and hepatology 2016 Sep (5) 676-684
Similar articles in PubMed
DOI:
10.1016/j.jcmgh.2016.05.012
Next-Generation Sequencing Reveals Frequent Opportunities for Exposure to Hepatitis C Virus in Ghana.
Joseph C Forbi
, Jennifer E Layden, Richard O Phillips, Nallely Mora,
Guo-Liang Xia
,
David S Campo
,
Michael A Purdy
,
Zoya E Dimitrova
, Dorcas O Owusu,
Lili T Punkova
,
Pavel Skums
, Shirley Owusu-Ofori, Fred Stephen Sarfo,
Gilberto Vaughan
,
Hajung Roh
, Ohene K Opare-Sem, Richard S Cooper, and
Yury E Khudyakov
PloS one 2015 (12) e0145530
Similar articles in PubMed
DOI:
10.1371/journal.pone.0145530
Accurate genetic detection of hepatitis C virus transmissions in outbreak settings.
David S Campo
,
Guo-Liang Xia
,
Zoya Dimitrova
,
Yulin Lin
,
Joseph C Forbi
,
Lilia Ganova-Raeva
,
Lili Punkova
,
Sumathi Ramachandran
,
Hong Thai
,
Pavel Skums
,
Seth Sims
,
Inna Rytsareva
,
Gilberto Vaughan
,
Ha-Jung Roh
,
Michael A Purdy
,
Amanda Sue
, and
Yury Khudyakov
The Journal of infectious diseases 2015 Nov
Similar articles in PubMed
DOI:
10.1093/infdis/jiv542
Cryptic Hepatitis B and E in Patients With Acute Hepatitis of Unknown Etiology.
Lilia Ganova-Raeva
,
Lili Punkova
,
David S Campo
,
Zoya Dimitrova
,
Pavel Skums
, Nga H Vu, Do T Dat, Harry R Dalton, and
Yury Khudyakov
J. Infect. Dis. 2015 Jun 8.
Similar articles in PubMed
DOI:
10.1093/infdis/jiv315
Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling.
Pavel Skums
,
Alexander Artyomenko
,
Olga Glebova
,
Sumathi Ramachandran
,
Ion Mandoiu
,
David S Campo
,
Zoya Dimitrova
,
Alex Zelikovsky
, and
Yury Khudyakov
Bioinformatics 2015 Mar 1. (5) 682-90
Similar articles in PubMed
DOI:
10.1093/bioinformatics/btu726
Recent population expansions of hepatitis B virus in the United States.
Sumathi Ramachandran
,
Michael A Purdy
,
Guo-Liang Xia
,
David S Campo
,
Zoya E Dimitrova
,
Eyasu H Teshale
,
Chong Gee Teo
, and
Yury E Khudyakov
J. Virol. 2014 Dec 88(24) 13971-80
Similar articles in PubMed
DOI:
10.1128/JVI.01594-14
Next-generation sequencing reveals large connected networks of intra-host HCV variants.
David S Campo
,
Zoya Dimitrova
, Lilian Yamasaki,
Pavel Skums
, Daryl Ty Lau, Gilberto Vaughan,
Joseph C Forbi
, Chong-Gee Teo, and
Yury Khudyakov
BMC Genomics 2014 15 Suppl 5S4
Similar articles in PubMed
DOI:
10.1186/1471-2164-15-S5-S4
Intra-host diversity and evolution of hepatitis C virus endemic to Côte d'Ivoire.
Joseph C Forbi
,
David S Campo
,
Michael A Purdy
,
Zoya E Dimitrova
,
Pavel Skums
,
Guo-Liang Xia
,
Lili T Punkova
,
Lilia M Ganova-Raeva
,
Gilberto Vaughan
,
Yousr Ben-Ayed
,
William M Switzer
, and
Yury E Khudyakov
J. Med. Virol. 2014 May 86(5) 765-71
Similar articles in PubMed
DOI:
10.1002/jmv.23897
Application of mass spectrometry to molecular surveillance of hepatitis B and C viral infections.
Lilia M Ganova-Raeva
,
Zoya E Dimitrova
,
David S Campo
, and
Yury Khudyakov
Antivir. Ther. (Lond.) 2012 17(7 Pt B) 1477-82
Similar articles in PubMed
DOI:
10.3851/IMP2466
Detection of hepatitis C virus transmission by use of DNA mass spectrometry.
Lilia M Ganova-Raeva
,
Zoya E Dimitrova
,
David S Campo
,
Yulin Lin
,
Sumathi Ramachandran
,
Guo-Liang Xia
, Christiane Honisch, Charles R Cantor, and
Yury E Khudyakov
J. Infect. Dis. 2013 Mar 15. 207(6) 999-1006
Similar articles in PubMed
DOI:
10.1093/infdis/jis938
Efficient error correction for next-generation sequencing of viral amplicons.
Pavel Skums
,
Zoya Dimitrova
,
David S Campo
,
Gilberto Vaughan
,
Livia Rossi
,
Joseph C Forbi
, Jonny Yokosawa, Alex Zelikovsky, and
Yury Khudyakov
BMC bioinformatics 2012 Jun 13 Suppl 10S6
Similar articles in PubMed
DOI:
10.1186/1471-2105-13-S10-S6
Convergence and coevolution of hepatitis B virus drug resistance.
Hong Thai
,
David S Campo
,
James Lara
,
Zoya Dimitrova
,
Sumathi Ramachandran
,
Guoliang Xia
,
Lilia Ganova-Raeva
,
Chong-Gee Teo
, Anna Lok, and
Yury Khudyakov
Nat Commun 2012 3789
Similar articles in PubMed
DOI:
10.1038/ncomms1794
Epidemic history of hepatitis C virus infection in two remote communities in Nigeria, West Africa.
Joseph C Forbi
,
Michael A Purdy
,
David S Campo
, Gilberto Vaughan,
Zoya E Dimitrova
,
Lilia M Ganova-Raeva
,
Guo-Liang Xia
, and
Yury E Khudyakov
J. Gen. Virol. 2012 Jul 93(Pt 7) 1410-21
Similar articles in PubMed
DOI:
10.1099/vir.0.042184-0
Hepatitis C virus antigenic convergence.
David S Campo
,
Zoya Dimitrova
,
Jonny Yokosawa
,
Duc Hoang
,
Nestor O Perez
,
Sumathi Ramachandran
, and
Yury Khudyakov
Scientific reports 2012 2267
Similar articles in PubMed
DOI:
10.1038/srep00267
Temporal variations in the hepatitis C virus intrahost population during chronic infection.
Sumathi Ramachandran
,
David S Campo
,
Zoya E Dimitrova
,
Guo-Liang Xia
,
Michael A Purdy
, and
Yury E Khudyakov
J. Virol. 2011 Jul 85(13) 6369-80
Similar articles in PubMed
DOI:
10.1128/JVI.02204-10
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Page last updated:
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