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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Jan 19, 2021. (Total: 3116 publications since 2011)
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Records 1-26 (of 26 Records)
Query Trace: all>>David S Campo[CDC Author]
Convex hulls in hamming space enable efficient search for similarity and clustering of genomic sequences.
David S Campo, and Yury Khudyakov
BMC bioinformatics 2020 Dec 21(Suppl 18) 482
Accurate spatiotemporal mapping of drug overdose deaths by machine learning of drug-related web-searches.
David S Campo, Joseph W Gussler, Amanda Sue, Pavel Skums, and Yury Khudyakov
PloS one 2020 15(12) e0243622
Machine learning can accelerate discovery and application of cyber-molecular cancer diagnostics.
David S Campo, and Yury Khudyakov
Journal of medical artificial intelligence 2020 Mar 3(7)
Entropy of mitochondrial DNA circulating in blood is associated with hepatocellular carcinoma.
David S Campo, Vishal Nayak, Ganesh Srinivasamoorthy, and Yury Khudyakov
BMC medical genomics 2019 Jun 12(Suppl 4) 74
Automated quality control for a molecular surveillance system.
Seth Sims, Atkinson G Longmire, David S Campo, Sumathi Ramachandran, Magdalena Medrzycki, Lilia Ganova-Raeva, Yulin Lin, Amanda Sue, Hong Thai, Alexander Zelikovsky, and Yury Khudyakov
BMC bioinformatics 2018 Oct (Suppl 11) 358
Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants.
Viachaslau Tsyvina, David S Campo, Seth Sims, Alex Zelikovsky, Yury Khudyakov, and Pavel Skums
BMC bioinformatics 2018 Oct (Suppl 11) 360
GHOST: global hepatitis outbreak and surveillance technology.
Atkinson G Longmire, Seth Sims, Inna Rytsareva, David S Campo, Pavel Skums, Zoya Dimitrova, Sumathi Ramachandran, Magdalena Medrzycki, Hong Thai, Lilia Ganova-Raeva, Yulin Lin, Lili T Punkova, Amanda Sue, Massimo Mirabito, Silver Wang, Robin Tracy, Victor Bolet, Thom Sukalac, Chris Lynberg, and Yury Khudyakov
BMC genomics 2017 Dec (Suppl 10) 916
Transmissibility of intra-host hepatitis C virus variants.
David S Campo, June Zhang, Sumathi Ramachandran, and Yury Khudyakov
BMC genomics 2017 Dec (Suppl 10) 881
Efficient detection of viral transmissions with Next-Generation Sequencing data.
Inna Rytsareva, David S Campo, Yueli Zheng, Seth Sims, Sharma V Thankachan, Cansu Tetik, Jain Chirag, Sriram P Chockalingam, Amanda Sue, Srinivas Aluru, and Yury Khudyakov
BMC genomics 2017 May (Suppl 4) 372
Molecular epidemiology of hepatitis B virus infection in Tanzania.
Joseph C Forbi, Michael Dillon, Michael A Purdy, Bakary S Drammeh, Alexandra Tejada-Strop, Daniel McGovern, Guo-Liang Xia, Yulin Lin, Lilia M Ganova-Raeva, David S Campo, Hong Thai, Gilberto Vaughan, Dunstan Haule, Regina P Kutaga, Sridhar V Basavaraju, Saleem Kamili, and Yury E Khudyakov
The Journal of general virology 2017 May
Increased Mitochondrial Genetic Diversity in Persons Infected With Hepatitis C Virus.
David S Campo, Ha-Jung Roh, Brian L Pearlman, Daniel S Fierer, Sumathi Ramachandran, Gilberto Vaughan, Andrew Hinds, Zoya Dimitrova, Pavel Skums, and Yury Khudyakov
Cellular and molecular gastroenterology and hepatology 2016 Sep (5) 676-684
Next-Generation Sequencing Reveals Frequent Opportunities for Exposure to Hepatitis C Virus in Ghana.
Joseph C Forbi, Jennifer E Layden, Richard O Phillips, Nallely Mora, Guo-Liang Xia, David S Campo, Michael A Purdy, Zoya E Dimitrova, Dorcas O Owusu, Lili T Punkova, Pavel Skums, Shirley Owusu-Ofori, Fred Stephen Sarfo, Gilberto Vaughan, Hajung Roh, Ohene K Opare-Sem, Richard S Cooper, and Yury E Khudyakov
PloS one 2015 (12) e0145530
Accurate genetic detection of hepatitis C virus transmissions in outbreak settings.
David S Campo, Guo-Liang Xia, Zoya Dimitrova, Yulin Lin, Joseph C Forbi, Lilia Ganova-Raeva, Lili Punkova, Sumathi Ramachandran, Hong Thai, Pavel Skums, Seth Sims, Inna Rytsareva, Gilberto Vaughan, Ha-Jung Roh, Michael A Purdy, Amanda Sue, and Yury Khudyakov
The Journal of infectious diseases 2015 Nov
Cryptic Hepatitis B and E in Patients With Acute Hepatitis of Unknown Etiology.
Lilia Ganova-Raeva, Lili Punkova, David S Campo, Zoya Dimitrova, Pavel Skums, Nga H Vu, Do T Dat, Harry R Dalton, and Yury Khudyakov
J. Infect. Dis. 2015 Jun 8.
Good laboratory practice for clinical next-generation sequencing informatics pipelines.
Amy S Gargis, Lisa Kalman, David P Bick, Cristina da Silva, David P Dimmock, Birgit H Funke, Sivakumar Gowrisankar, Madhuri R Hegde, Shashikant Kulkarni, Christopher E Mason, Rakesh Nagarajan, Karl V Voelkerding, Elizabeth A Worthey, Nazneen Aziz, John Barnes, Sarah F Bennett, Himani Bisht, Deanna M Church, Zoya Dimitrova, Shaw R Gargis, Nabil Hafez, Tina Hambuch, Fiona C L Hyland, Ruth Ann Luna, Duncan MacCannell, Tobias Mann, Megan R McCluskey, Timothy K McDaniel, Lilia M Ganova-Raeva, Heidi L Rehm, Jeffrey Reid, David S Campo, Richard B Resnick, Perry G Ridge, Marc L Salit, Pavel Skums, Lee-Jun C Wong, Barbara A Zehnbauer, Justin M Zook, and Ira M Lubin
Nature biotechnology 2015 Jul (7) 689-93
Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling.
Pavel Skums, Alexander Artyomenko, Olga Glebova, Sumathi Ramachandran, Ion Mandoiu, David S Campo, Zoya Dimitrova, Alex Zelikovsky, and Yury Khudyakov
Bioinformatics 2015 Mar 1. (5) 682-90
Recent population expansions of hepatitis B virus in the United States.
Sumathi Ramachandran, Michael A Purdy, Guo-Liang Xia, David S Campo, Zoya E Dimitrova, Eyasu H Teshale, Chong Gee Teo, and Yury E Khudyakov
J. Virol. 2014 Dec 88(24) 13971-80
Next-generation sequencing reveals large connected networks of intra-host HCV variants.
David S Campo, Zoya Dimitrova, Lilian Yamasaki, Pavel Skums, Daryl Ty Lau, Gilberto Vaughan, Joseph C Forbi, Chong-Gee Teo, and Yury Khudyakov
BMC Genomics 2014 15 Suppl 5S4
Intra-host diversity and evolution of hepatitis C virus endemic to Côte d'Ivoire.
Joseph C Forbi, David S Campo, Michael A Purdy, Zoya E Dimitrova, Pavel Skums, Guo-Liang Xia, Lili T Punkova, Lilia M Ganova-Raeva, Gilberto Vaughan, Yousr Ben-Ayed, William M Switzer, and Yury E Khudyakov
J. Med. Virol. 2014 May 86(5) 765-71
Application of mass spectrometry to molecular surveillance of hepatitis B and C viral infections.
Lilia M Ganova-Raeva, Zoya E Dimitrova, David S Campo, and Yury Khudyakov
Antivir. Ther. (Lond.) 2012 17(7 Pt B) 1477-82
Detection of hepatitis C virus transmission by use of DNA mass spectrometry.
Lilia M Ganova-Raeva, Zoya E Dimitrova, David S Campo, Yulin Lin, Sumathi Ramachandran, Guo-Liang Xia, Christiane Honisch, Charles R Cantor, and Yury E Khudyakov
J. Infect. Dis. 2013 Mar 15. 207(6) 999-1006
Efficient error correction for next-generation sequencing of viral amplicons.
Pavel Skums, Zoya Dimitrova, David S Campo, Gilberto Vaughan, Livia Rossi, Joseph C Forbi, Jonny Yokosawa, Alex Zelikovsky, and Yury Khudyakov
BMC bioinformatics 2012 Jun 13 Suppl 10S6
Convergence and coevolution of hepatitis B virus drug resistance.
Hong Thai, David S Campo, James Lara, Zoya Dimitrova, Sumathi Ramachandran, Guoliang Xia, Lilia Ganova-Raeva, Chong-Gee Teo, Anna Lok, and Yury Khudyakov
Nat Commun 2012 3789
Epidemic history of hepatitis C virus infection in two remote communities in Nigeria, West Africa.
Joseph C Forbi, Michael A Purdy, David S Campo, Gilberto Vaughan, Zoya E Dimitrova, Lilia M Ganova-Raeva, Guo-Liang Xia, and Yury E Khudyakov
J. Gen. Virol. 2012 Jul 93(Pt 7) 1410-21
Hepatitis C virus antigenic convergence.
David S Campo, Zoya Dimitrova, Jonny Yokosawa, Duc Hoang, Nestor O Perez, Sumathi Ramachandran, and Yury Khudyakov
Scientific reports 2012 2267
Temporal variations in the hepatitis C virus intrahost population during chronic infection.
Sumathi Ramachandran, David S Campo, Zoya E Dimitrova, Guo-Liang Xia, Michael A Purdy, and Yury E Khudyakov
J. Virol. 2011 Jul 85(13) 6369-80
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