Last data update: Jan 19, 2021. (Total: 3116 publications since 2011)
|Query Trace: all>>David S Campo[CDC Author]|
| Convex hulls in hamming space enable efficient search for similarity and clustering of genomic sequences.
David S Campo, and Yury Khudyakov
BMC bioinformatics 2020 Dec 21(Suppl 18) 482
| Accurate spatiotemporal mapping of drug overdose deaths by machine learning of drug-related web-searches.
David S Campo, Joseph W Gussler, Amanda Sue, Pavel Skums, and Yury Khudyakov
PloS one 2020 15(12) e0243622
| Machine learning can accelerate discovery and application of cyber-molecular cancer diagnostics.
David S Campo, and Yury Khudyakov
Journal of medical artificial intelligence 2020 Mar 3(7)
| Entropy of mitochondrial DNA circulating in blood is associated with hepatocellular carcinoma.
David S Campo, Vishal Nayak, Ganesh Srinivasamoorthy, and Yury Khudyakov
BMC medical genomics 2019 Jun 12(Suppl 4) 74
| Automated quality control for a molecular surveillance system.
Seth Sims, Atkinson G Longmire, David S Campo, Sumathi Ramachandran, Magdalena Medrzycki, Lilia Ganova-Raeva, Yulin Lin, Amanda Sue, Hong Thai, Alexander Zelikovsky, and Yury Khudyakov
BMC bioinformatics 2018 Oct (Suppl 11) 358
| Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants.
Viachaslau Tsyvina, David S Campo, Seth Sims, Alex Zelikovsky, Yury Khudyakov, and Pavel Skums
BMC bioinformatics 2018 Oct (Suppl 11) 360
| GHOST: global hepatitis outbreak and surveillance technology.
Atkinson G Longmire, Seth Sims, Inna Rytsareva, David S Campo, Pavel Skums, Zoya Dimitrova, Sumathi Ramachandran, Magdalena Medrzycki, Hong Thai, Lilia Ganova-Raeva, Yulin Lin, Lili T Punkova, Amanda Sue, Massimo Mirabito, Silver Wang, Robin Tracy, Victor Bolet, Thom Sukalac, Chris Lynberg, and Yury Khudyakov
BMC genomics 2017 Dec (Suppl 10) 916
| Transmissibility of intra-host hepatitis C virus variants.
David S Campo, June Zhang, Sumathi Ramachandran, and Yury Khudyakov
BMC genomics 2017 Dec (Suppl 10) 881
| Efficient detection of viral transmissions with Next-Generation Sequencing data.
Inna Rytsareva, David S Campo, Yueli Zheng, Seth Sims, Sharma V Thankachan, Cansu Tetik, Jain Chirag, Sriram P Chockalingam, Amanda Sue, Srinivas Aluru, and Yury Khudyakov
BMC genomics 2017 May (Suppl 4) 372
| Molecular epidemiology of hepatitis B virus infection in Tanzania.
Joseph C Forbi, Michael Dillon, Michael A Purdy, Bakary S Drammeh, Alexandra Tejada-Strop, Daniel McGovern, Guo-Liang Xia, Yulin Lin, Lilia M Ganova-Raeva, David S Campo, Hong Thai, Gilberto Vaughan, Dunstan Haule, Regina P Kutaga, Sridhar V Basavaraju, Saleem Kamili, and Yury E Khudyakov
The Journal of general virology 2017 May
| Increased Mitochondrial Genetic Diversity in Persons Infected With Hepatitis C Virus.
David S Campo, Ha-Jung Roh, Brian L Pearlman, Daniel S Fierer, Sumathi Ramachandran, Gilberto Vaughan, Andrew Hinds, Zoya Dimitrova, Pavel Skums, and Yury Khudyakov
Cellular and molecular gastroenterology and hepatology 2016 Sep (5) 676-684
| Next-Generation Sequencing Reveals Frequent Opportunities for Exposure to Hepatitis C Virus in Ghana.
Joseph C Forbi, Jennifer E Layden, Richard O Phillips, Nallely Mora, Guo-Liang Xia, David S Campo, Michael A Purdy, Zoya E Dimitrova, Dorcas O Owusu, Lili T Punkova, Pavel Skums, Shirley Owusu-Ofori, Fred Stephen Sarfo, Gilberto Vaughan, Hajung Roh, Ohene K Opare-Sem, Richard S Cooper, and Yury E Khudyakov
PloS one 2015 (12) e0145530
| Accurate genetic detection of hepatitis C virus transmissions in outbreak settings.
David S Campo, Guo-Liang Xia, Zoya Dimitrova, Yulin Lin, Joseph C Forbi, Lilia Ganova-Raeva, Lili Punkova, Sumathi Ramachandran, Hong Thai, Pavel Skums, Seth Sims, Inna Rytsareva, Gilberto Vaughan, Ha-Jung Roh, Michael A Purdy, Amanda Sue, and Yury Khudyakov
The Journal of infectious diseases 2015 Nov
| Cryptic Hepatitis B and E in Patients With Acute Hepatitis of Unknown Etiology.
Lilia Ganova-Raeva, Lili Punkova, David S Campo, Zoya Dimitrova, Pavel Skums, Nga H Vu, Do T Dat, Harry R Dalton, and Yury Khudyakov
J. Infect. Dis. 2015 Jun 8.
| Good laboratory practice for clinical next-generation sequencing informatics pipelines.
Amy S Gargis, Lisa Kalman, David P Bick, Cristina da Silva, David P Dimmock, Birgit H Funke, Sivakumar Gowrisankar, Madhuri R Hegde, Shashikant Kulkarni, Christopher E Mason, Rakesh Nagarajan, Karl V Voelkerding, Elizabeth A Worthey, Nazneen Aziz, John Barnes, Sarah F Bennett, Himani Bisht, Deanna M Church, Zoya Dimitrova, Shaw R Gargis, Nabil Hafez, Tina Hambuch, Fiona C L Hyland, Ruth Ann Luna, Duncan MacCannell, Tobias Mann, Megan R McCluskey, Timothy K McDaniel, Lilia M Ganova-Raeva, Heidi L Rehm, Jeffrey Reid, David S Campo, Richard B Resnick, Perry G Ridge, Marc L Salit, Pavel Skums, Lee-Jun C Wong, Barbara A Zehnbauer, Justin M Zook, and Ira M Lubin
Nature biotechnology 2015 Jul (7) 689-93
| Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling.
Pavel Skums, Alexander Artyomenko, Olga Glebova, Sumathi Ramachandran, Ion Mandoiu, David S Campo, Zoya Dimitrova, Alex Zelikovsky, and Yury Khudyakov
Bioinformatics 2015 Mar 1. (5) 682-90
| Recent population expansions of hepatitis B virus in the United States.
Sumathi Ramachandran, Michael A Purdy, Guo-Liang Xia, David S Campo, Zoya E Dimitrova, Eyasu H Teshale, Chong Gee Teo, and Yury E Khudyakov
J. Virol. 2014 Dec 88(24) 13971-80
| Next-generation sequencing reveals large connected networks of intra-host HCV variants.
David S Campo, Zoya Dimitrova, Lilian Yamasaki, Pavel Skums, Daryl Ty Lau, Gilberto Vaughan, Joseph C Forbi, Chong-Gee Teo, and Yury Khudyakov
BMC Genomics 2014 15 Suppl 5S4
| Intra-host diversity and evolution of hepatitis C virus endemic to Côte d'Ivoire.
Joseph C Forbi, David S Campo, Michael A Purdy, Zoya E Dimitrova, Pavel Skums, Guo-Liang Xia, Lili T Punkova, Lilia M Ganova-Raeva, Gilberto Vaughan, Yousr Ben-Ayed, William M Switzer, and Yury E Khudyakov
J. Med. Virol. 2014 May 86(5) 765-71
| Application of mass spectrometry to molecular surveillance of hepatitis B and C viral infections.
Lilia M Ganova-Raeva, Zoya E Dimitrova, David S Campo, and Yury Khudyakov
Antivir. Ther. (Lond.) 2012 17(7 Pt B) 1477-82
| Detection of hepatitis C virus transmission by use of DNA mass spectrometry.
Lilia M Ganova-Raeva, Zoya E Dimitrova, David S Campo, Yulin Lin, Sumathi Ramachandran, Guo-Liang Xia, Christiane Honisch, Charles R Cantor, and Yury E Khudyakov
J. Infect. Dis. 2013 Mar 15. 207(6) 999-1006
| Efficient error correction for next-generation sequencing of viral amplicons.
Pavel Skums, Zoya Dimitrova, David S Campo, Gilberto Vaughan, Livia Rossi, Joseph C Forbi, Jonny Yokosawa, Alex Zelikovsky, and Yury Khudyakov
BMC bioinformatics 2012 Jun 13 Suppl 10S6
| Convergence and coevolution of hepatitis B virus drug resistance.
Hong Thai, David S Campo, James Lara, Zoya Dimitrova, Sumathi Ramachandran, Guoliang Xia, Lilia Ganova-Raeva, Chong-Gee Teo, Anna Lok, and Yury Khudyakov
Nat Commun 2012 3789
| Epidemic history of hepatitis C virus infection in two remote communities in Nigeria, West Africa.
Joseph C Forbi, Michael A Purdy, David S Campo, Gilberto Vaughan, Zoya E Dimitrova, Lilia M Ganova-Raeva, Guo-Liang Xia, and Yury E Khudyakov
J. Gen. Virol. 2012 Jul 93(Pt 7) 1410-21
| Hepatitis C virus antigenic convergence.
David S Campo, Zoya Dimitrova, Jonny Yokosawa, Duc Hoang, Nestor O Perez, Sumathi Ramachandran, and Yury Khudyakov
Scientific reports 2012 2267
| Temporal variations in the hepatitis C virus intrahost population during chronic infection.
Sumathi Ramachandran, David S Campo, Zoya E Dimitrova, Guo-Liang Xia, Michael A Purdy, and Yury E Khudyakov
J. Virol. 2011 Jul 85(13) 6369-80