CDC-Authored Genomics and Precision Health Publications Database

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Last data update: Feb 01, 2023. (Total: 4188 publications since 2011)

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Records 1-22 (of 22 Records)

Query Trace: all>>Sumathi Ramachandran[CDC Author]
SOPHIE: Viral outbreak investigation and transmission history reconstruction in a joint phylogenetic and network theory framework. Pavel Skums, Fatemeh Mohebbi, Vyacheslav Tsyvina, Pelin Icer Baykal, Alina Nemira, Sumathi Ramachandran, and Yury Khudyakov Cell systems 2022 13(10) 844-856.e4 Similar articles in PubMed DOI:10.1016/j.cels.2022.07.005
A 2019 Outbreak Investigation of Hepatitis A Virus Infections in the United States Linked to Imported Fresh Blackberries. Monica McClure, Johnson Nsubuga, Martha P Montgomery, Erin Jenkins, Alvin Crosby, Daniela Schoelen, Colin Basler, Sumathi Ramachandran, Yulin Lin, Guo-Liang Xia, Yury Khudaykov, Vilasini Suktankar, Angela Wagley, Vincent Thomas, Jacquelina Woods, Leslie Hintz, Janete Oliveira, Ana Lilia Sandoval, Justin Frederick, Blake Hendrickson, Laura Gieraltowski, and Stelios Viazis Food and environmental virology 2022 Similar articles in PubMed DOI:10.1007/s12560-022-09527-y
Development and Evaluation of a Molecular Hepatitis A Virus Assay for Serum and Stool Specimens. Robert A Kozak, Candace Rutherford, Melissa Richard-Greenblatt, N Y Elizabeth Chau, Ana Cabrera, Mia Biondi, Jamie Borlang, Jaqueline Day, Carla Osiowy, Sumathi Ramachandran, Nancy Mayer, Laurel Glaser, and Marek Smieja Viruses 2022 14(1) Similar articles in PubMed DOI:10.3390/v14010159
Changing Molecular Epidemiology of Hepatitis A Virus Infection, United States, 1996-2019. Sumathi Ramachandran, Guo-Liang Xia, Zoya Dimitrova, Yulin Lin, Martha Montgomery, Ryan Augustine, Saleem Kamili, and Yury Khudyakov Emerging infectious diseases 2021 27(6) 1742-1745 Similar articles in PubMed DOI:10.3201/eid2706.203036
Clinical and Laboratory Findings in Patients with Potential SARS-CoV-2 Reinfection, May-July 2020. James T Lee, Elisabeth M Hesse, Heather N Paulin, Deblina Datta, Lee S Katz, Amish Talwar, Gregory Chang, Romeo R Galang, Jennifer L Harcourt, Azaibi Tamin, Natalie J Thornburg, Karen K Wong, Valerie Stevens, Kaylee Kim, Suxiang Tong, Bin Zhou, Krista Queen, Jan Drobeniuc, Jennifer M Folster, D Joseph Sexton, Sumathi Ramachandran, Hannah Browne, John Iskander, and Kiren Mitruka Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2021 2 Similar articles in PubMed DOI:10.1093/cid/ciab148
Hepatitis C Virus Potentially Transmitted by Opioid Drug Diversion from a Nurse - Washington, August 2017-March 2018. Henry N Njuguna, Denise Stinson, Patricia Montgomery, Nigel Turner, Marisa D'Angeli, Jason Carr, Sara Podczervinski, Cathy Wasserman, Sumathi Ramachandran, Todd Lucas, Danae Bixler, Kiran Perkins, Isaac Benowitz, and Anne Moorman MMWR. Morbidity and mortality weekly report 2019 Apr (16) 374-376 Similar articles in PubMed DOI:10.15585/mmwr.mm6816a3
A large HCV transmission network enabled a fast-growing HIV outbreak in rural Indiana, 2015. Sumathi Ramachandran, Hong Thai, Joseph C Forbi, Romeo Regi Galang, Zoya Dimitrova, Guo-Liang Xia, Yulin Lin, Lili T Punkova, Pamela R Pontones, Jessica Gentry, Sara J Blosser, Judith Lovchik, William M Switzer, Eyasu Teshale, Philip Peters, John Ward, Yury Khudyakov, and EBioMedicine 2018 Nov Similar articles in PubMed DOI:10.1016/j.ebiom.2018.10.007
Automated quality control for a molecular surveillance system. Seth Sims, Atkinson G Longmire, David S Campo, Sumathi Ramachandran, Magdalena Medrzycki, Lilia Ganova-Raeva, Yulin Lin, Amanda Sue, Hong Thai, Alexander Zelikovsky, and Yury Khudyakov BMC bioinformatics 2018 Oct (Suppl 11) 358 Similar articles in PubMed DOI:10.1186/s12859-018-2329-5
HCV adaptation to HIV coinfection. James Lara, Mahder A Teka, Seth Sims, Guo-Liang Xia, Sumathi Ramachandran, and Yury Khudyakov Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2018 Nov 65216-225 Similar articles in PubMed DOI:10.1016/j.meegid.2018.07.039
QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data. Pavel Skums, Alex Zelikovsky, Rahul Singh, Walker Gussler, Zoya Dimitrova, Sergey Knyazev, Igor Mandric, Sumathi Ramachandran, David Campo, Deeptanshu Jha, Leonid Bunimovich, Elizabeth Costenbader, Connie Sexton, Siobhan O'Connor, Guo-Liang Xia, and Yury Khudyakov Bioinformatics (Oxford, England) 2018 Jan (1) 163-170 Similar articles in PubMed DOI:10.1093/bioinformatics/btx402
Transmissibility of intra-host hepatitis C virus variants. David S Campo, June Zhang, Sumathi Ramachandran, and Yury Khudyakov BMC genomics 2017 Dec (Suppl 10) 881 Similar articles in PubMed DOI:10.1186/s12864-017-4267-4
GHOST: global hepatitis outbreak and surveillance technology. Atkinson G Longmire, Seth Sims, Inna Rytsareva, David S Campo, Pavel Skums, Zoya Dimitrova, Sumathi Ramachandran, Magdalena Medrzycki, Hong Thai, Lilia Ganova-Raeva, Yulin Lin, Lili T Punkova, Amanda Sue, Massimo Mirabito, Silver Wang, Robin Tracy, Victor Bolet, Thom Sukalac, Chris Lynberg, and Yury Khudyakov BMC genomics 2017 Dec (Suppl 10) 916 Similar articles in PubMed DOI:10.1186/s12864-017-4268-3
Increased Mitochondrial Genetic Diversity in Persons Infected With Hepatitis C Virus. David S Campo, Ha-Jung Roh, Brian L Pearlman, Daniel S Fierer, Sumathi Ramachandran, Gilberto Vaughan, Andrew Hinds, Zoya Dimitrova, Pavel Skums, and Yury Khudyakov Cellular and molecular gastroenterology and hepatology 2016 Sep (5) 676-684 Similar articles in PubMed DOI:10.1016/j.jcmgh.2016.05.012
Accurate genetic detection of hepatitis C virus transmissions in outbreak settings. David S Campo, Guo-Liang Xia, Zoya Dimitrova, Yulin Lin, Joseph C Forbi, Lilia Ganova-Raeva, Lili Punkova, Sumathi Ramachandran, Hong Thai, Pavel Skums, Seth Sims, Inna Rytsareva, Gilberto Vaughan, Ha-Jung Roh, Michael A Purdy, Amanda Sue, and Yury Khudyakov The Journal of infectious diseases 2015 Nov Similar articles in PubMed DOI:10.1093/infdis/jiv542
Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling. Pavel Skums, Alexander Artyomenko, Olga Glebova, Sumathi Ramachandran, Ion Mandoiu, David S Campo, Zoya Dimitrova, Alex Zelikovsky, and Yury Khudyakov Bioinformatics 2015 Mar 1. (5) 682-90 Similar articles in PubMed DOI:10.1093/bioinformatics/btu726
Recent population expansions of hepatitis B virus in the United States. Sumathi Ramachandran, Michael A Purdy, Guo-Liang Xia, David S Campo, Zoya E Dimitrova, Eyasu H Teshale, Chong Gee Teo, and Yury E Khudyakov J. Virol. 2014 Dec 88(24) 13971-80 Similar articles in PubMed DOI:10.1128/JVI.01594-14
Detection of hepatitis C virus transmission by use of DNA mass spectrometry. Lilia M Ganova-Raeva, Zoya E Dimitrova, David S Campo, Yulin Lin, Sumathi Ramachandran, Guo-Liang Xia, Christiane Honisch, Charles R Cantor, and Yury E Khudyakov J. Infect. Dis. 2013 Mar 15. 207(6) 999-1006 Similar articles in PubMed DOI:10.1093/infdis/jis938
Convergence and coevolution of hepatitis B virus drug resistance. Hong Thai, David S Campo, James Lara, Zoya Dimitrova, Sumathi Ramachandran, Guoliang Xia, Lilia Ganova-Raeva, Chong-Gee Teo, Anna Lok, and Yury Khudyakov Nat Commun 2012 3789 Similar articles in PubMed DOI:10.1038/ncomms1794
Hepatitis C virus antigenic convergence. David S Campo, Zoya Dimitrova, Jonny Yokosawa, Duc Hoang, Nestor O Perez, Sumathi Ramachandran, and Yury Khudyakov Scientific reports 2012 2267 Similar articles in PubMed DOI:10.1038/srep00267
Evaluation of intra-host variants of the entire hepatitis B virus genome. Sumathi Ramachandran, Xiangjun Zhai, Hong Thai, Davis S Campo, Guoliang Xia, Lilia M Ganova-Raeva, Jan Drobeniuc, and Yury E Khudyakov PLoS ONE 2011 6(9) e25232 Similar articles in PubMed DOI:10.1371/journal.pone.0025232
Genotypic distribution of hepatitis B virus (HBV) among acute cases of HBV infection, selected United States counties, 1999-2005. Eyasu H Teshale, Sumathi Ramachandran, Guo-Liang Xia, Henry Roberts, Justina Groeger, Vaughn Barry, Dale J Hu, Scott D Holmberg, Deborah Holtzman, John W Ward, Chong-Gee Teo, and Yuri Khudyakov Clin. Infect. Dis. 2011 Oct 53(8) 751-6 Similar articles in PubMed DOI:10.1093/cid/cir495
Temporal variations in the hepatitis C virus intrahost population during chronic infection. Sumathi Ramachandran, David S Campo, Zoya E Dimitrova, Guo-Liang Xia, Michael A Purdy, and Yury E Khudyakov J. Virol. 2011 Jul 85(13) 6369-80 Similar articles in PubMed DOI:10.1128/JVI.02204-10