Skip directly to search
Skip directly to A to Z list
Skip directly to navigation
Skip directly to page options
Skip directly to site content
Start of Search Controls
Search Form Controls
Search The CDC
submit
CDC A-Z Index
MENU
CDC A-Z
SEARCH
A
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
Q
R
S
T
U
V
W
X
Y
Z
#
Search Form Controls
Search The CDC
submit
CDC A-Z Index
Public Health Genomics and Precision Health Knowledge Base (v8.2)
Note: Javascript is disabled or is not supported by your browser. For this reason, some items on this page will be unavailable. For more information about this message, please visit this page:
About CDC.gov
.
PHGKB
About
Specialized PHGKB
Cancer PHGKB
Diabetes PHGKB
Infectious Diseases PHGKB
HLBS-PopOmics
Rare Diseases PHGKB
Health Equity PHGKB
Family Health History PHGKB
Reproductive and Child Health PHGKB
Pharmacogenomics PHGKB
Neurological Disorders PHGKB
Primary Immune Deficiency Diseases PHGKB
Environmental Health PHGKB
Genomics (A-Z)
Office of Genomics and Precision Public Health
State Public Health Genomics Programs Map
Genomics Precision Health Weekly Scan
(Current Edition)
Advanced Molecular Detection Weekly Clips
(Current Edition)
Non-Genomics Precision Health Weekly Scan
(Current Edition)
CDC-authored Publications Update
COVID-19 Precision Health Weekly Update
(Current Edition)
All Databases
COVID-19 GPH (43290)
CDC/NIH Web Information Database (30831)
CDC-Authored Genomics and Precision Health Publications Database (4188)
Precision Health Database (52379)
Tier-Classified Guidelines Database (509)
State Public Health Genomics Programs Database (319)
Pathogen Advanced Molecular Detection Database (23888)
All of Us Reports and Publications Database (284)
HuGE Navigator
Phenopedia (3416)
Genopedia (16521)
HuGE Literature Finder (171544)
Variant Name Mapper (18583)
Release Note
Contact Us
CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB
CDC-Authored Genomics and Precision Health Publications Database
Last data update: Feb 01, 2023
. (Total: 4188 publications since 2011)
All
HLBS
RCH
FHH
Equity
Diabetes
Rare
Cancer
COVID-19
ND
PGx
PI
Environmental
dataset
Filtered By:
Select to fine-tune your search
CDC Author
Year
Journal
Records 1-22 (of 22 Records)
Query Trace:
all>>Sumathi Ramachandran[CDC Author]
SOPHIE: Viral outbreak investigation and transmission history reconstruction in a joint phylogenetic and network theory framework.
Pavel Skums, Fatemeh Mohebbi, Vyacheslav Tsyvina, Pelin Icer Baykal, Alina Nemira,
Sumathi Ramachandran
, and
Yury Khudyakov
Cell systems 2022 13(10) 844-856.e4
Similar articles in PubMed
DOI:
10.1016/j.cels.2022.07.005
A 2019 Outbreak Investigation of Hepatitis A Virus Infections in the United States Linked to Imported Fresh Blackberries.
Monica McClure, Johnson Nsubuga,
Martha P Montgomery
, Erin Jenkins, Alvin Crosby, Daniela Schoelen,
Colin Basler
,
Sumathi Ramachandran
,
Yulin Lin
,
Guo-Liang Xia
,
Yury Khudaykov
, Vilasini Suktankar, Angela Wagley, Vincent Thomas, Jacquelina Woods, Leslie Hintz, Janete Oliveira, Ana Lilia Sandoval, Justin Frederick, Blake Hendrickson,
Laura Gieraltowski
, and Stelios Viazis
Food and environmental virology 2022
Similar articles in PubMed
DOI:
10.1007/s12560-022-09527-y
Development and Evaluation of a Molecular Hepatitis A Virus Assay for Serum and Stool Specimens.
Robert A Kozak, Candace Rutherford, Melissa Richard-Greenblatt, N Y Elizabeth Chau, Ana Cabrera, Mia Biondi, Jamie Borlang, Jaqueline Day, Carla Osiowy,
Sumathi Ramachandran
, Nancy Mayer, Laurel Glaser, and Marek Smieja
Viruses 2022 14(1)
Similar articles in PubMed
DOI:
10.3390/v14010159
Changing Molecular Epidemiology of Hepatitis A Virus Infection, United States, 1996-2019.
Sumathi Ramachandran
,
Guo-Liang Xia
,
Zoya Dimitrova
,
Yulin Lin
,
Martha Montgomery
,
Ryan Augustine
,
Saleem Kamili
, and
Yury Khudyakov
Emerging infectious diseases 2021 27(6) 1742-1745
Similar articles in PubMed
DOI:
10.3201/eid2706.203036
Clinical and Laboratory Findings in Patients with Potential SARS-CoV-2 Reinfection, May-July 2020.
James T Lee
,
Elisabeth M Hesse
,
Heather N Paulin
,
Deblina Datta
,
Lee S Katz
,
Amish Talwar
,
Gregory Chang
,
Romeo R Galang
,
Jennifer L Harcourt
,
Azaibi Tamin
,
Natalie J Thornburg
,
Karen K Wong
,
Valerie Stevens
,
Kaylee Kim
,
Suxiang Tong
,
Bin Zhou
,
Krista Queen
,
Jan Drobeniuc
,
Jennifer M Folster
,
D Joseph Sexton
,
Sumathi Ramachandran
,
Hannah Browne
,
John Iskander
, and
Kiren Mitruka
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2021 2
Similar articles in PubMed
DOI:
10.1093/cid/ciab148
Hepatitis C Virus Potentially Transmitted by Opioid Drug Diversion from a Nurse - Washington, August 2017-March 2018.
Henry N Njuguna
, Denise Stinson, Patricia Montgomery, Nigel Turner, Marisa D'Angeli, Jason Carr, Sara Podczervinski, Cathy Wasserman,
Sumathi Ramachandran
,
Todd Lucas
,
Danae Bixler
,
Kiran Perkins
,
Isaac Benowitz
, and
Anne Moorman
MMWR. Morbidity and mortality weekly report 2019 Apr (16) 374-376
Similar articles in PubMed
DOI:
10.15585/mmwr.mm6816a3
A large HCV transmission network enabled a fast-growing HIV outbreak in rural Indiana, 2015.
Sumathi Ramachandran
,
Hong Thai
,
Joseph C Forbi
,
Romeo Regi Galang
,
Zoya Dimitrova
,
Guo-Liang Xia
,
Yulin Lin
,
Lili T Punkova
, Pamela R Pontones, Jessica Gentry, Sara J Blosser, Judith Lovchik,
William M Switzer
,
Eyasu Teshale
,
Philip Peters
,
John Ward
,
Yury Khudyakov
, and
EBioMedicine 2018 Nov
Similar articles in PubMed
DOI:
10.1016/j.ebiom.2018.10.007
Automated quality control for a molecular surveillance system.
Seth Sims, Atkinson G Longmire,
David S Campo
,
Sumathi Ramachandran
,
Magdalena Medrzycki
,
Lilia Ganova-Raeva
,
Yulin Lin
,
Amanda Sue
,
Hong Thai
, Alexander Zelikovsky, and
Yury Khudyakov
BMC bioinformatics 2018 Oct (Suppl 11) 358
Similar articles in PubMed
DOI:
10.1186/s12859-018-2329-5
HCV adaptation to HIV coinfection.
James Lara
,
Mahder A Teka
,
Seth Sims
,
Guo-Liang Xia
,
Sumathi Ramachandran
, and
Yury Khudyakov
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2018 Nov 65216-225
Similar articles in PubMed
DOI:
10.1016/j.meegid.2018.07.039
QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data.
Pavel Skums
, Alex Zelikovsky, Rahul Singh,
Walker Gussler
,
Zoya Dimitrova
, Sergey Knyazev, Igor Mandric,
Sumathi Ramachandran
,
David Campo
, Deeptanshu Jha, Leonid Bunimovich, Elizabeth Costenbader,
Connie Sexton
,
Siobhan O'Connor
,
Guo-Liang Xia
, and
Yury Khudyakov
Bioinformatics (Oxford, England) 2018 Jan (1) 163-170
Similar articles in PubMed
DOI:
10.1093/bioinformatics/btx402
Transmissibility of intra-host hepatitis C virus variants.
David S Campo
, June Zhang,
Sumathi Ramachandran
, and
Yury Khudyakov
BMC genomics 2017 Dec (Suppl 10) 881
Similar articles in PubMed
DOI:
10.1186/s12864-017-4267-4
GHOST: global hepatitis outbreak and surveillance technology.
Atkinson G Longmire
,
Seth Sims
,
Inna Rytsareva
,
David S Campo
,
Pavel Skums
,
Zoya Dimitrova
,
Sumathi Ramachandran
,
Magdalena Medrzycki
,
Hong Thai
,
Lilia Ganova-Raeva
,
Yulin Lin
,
Lili T Punkova
,
Amanda Sue
,
Massimo Mirabito
,
Silver Wang
,
Robin Tracy
,
Victor Bolet
,
Thom Sukalac
,
Chris Lynberg
, and
Yury Khudyakov
BMC genomics 2017 Dec (Suppl 10) 916
Similar articles in PubMed
DOI:
10.1186/s12864-017-4268-3
Increased Mitochondrial Genetic Diversity in Persons Infected With Hepatitis C Virus.
David S Campo
,
Ha-Jung Roh
, Brian L Pearlman, Daniel S Fierer,
Sumathi Ramachandran
,
Gilberto Vaughan
, Andrew Hinds,
Zoya Dimitrova
,
Pavel Skums
, and
Yury Khudyakov
Cellular and molecular gastroenterology and hepatology 2016 Sep (5) 676-684
Similar articles in PubMed
DOI:
10.1016/j.jcmgh.2016.05.012
Accurate genetic detection of hepatitis C virus transmissions in outbreak settings.
David S Campo
,
Guo-Liang Xia
,
Zoya Dimitrova
,
Yulin Lin
,
Joseph C Forbi
,
Lilia Ganova-Raeva
,
Lili Punkova
,
Sumathi Ramachandran
,
Hong Thai
,
Pavel Skums
,
Seth Sims
,
Inna Rytsareva
,
Gilberto Vaughan
,
Ha-Jung Roh
,
Michael A Purdy
,
Amanda Sue
, and
Yury Khudyakov
The Journal of infectious diseases 2015 Nov
Similar articles in PubMed
DOI:
10.1093/infdis/jiv542
Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling.
Pavel Skums
,
Alexander Artyomenko
,
Olga Glebova
,
Sumathi Ramachandran
,
Ion Mandoiu
,
David S Campo
,
Zoya Dimitrova
,
Alex Zelikovsky
, and
Yury Khudyakov
Bioinformatics 2015 Mar 1. (5) 682-90
Similar articles in PubMed
DOI:
10.1093/bioinformatics/btu726
Recent population expansions of hepatitis B virus in the United States.
Sumathi Ramachandran
,
Michael A Purdy
,
Guo-Liang Xia
,
David S Campo
,
Zoya E Dimitrova
,
Eyasu H Teshale
,
Chong Gee Teo
, and
Yury E Khudyakov
J. Virol. 2014 Dec 88(24) 13971-80
Similar articles in PubMed
DOI:
10.1128/JVI.01594-14
Detection of hepatitis C virus transmission by use of DNA mass spectrometry.
Lilia M Ganova-Raeva
,
Zoya E Dimitrova
,
David S Campo
,
Yulin Lin
,
Sumathi Ramachandran
,
Guo-Liang Xia
, Christiane Honisch, Charles R Cantor, and
Yury E Khudyakov
J. Infect. Dis. 2013 Mar 15. 207(6) 999-1006
Similar articles in PubMed
DOI:
10.1093/infdis/jis938
Convergence and coevolution of hepatitis B virus drug resistance.
Hong Thai
,
David S Campo
,
James Lara
,
Zoya Dimitrova
,
Sumathi Ramachandran
,
Guoliang Xia
,
Lilia Ganova-Raeva
,
Chong-Gee Teo
, Anna Lok, and
Yury Khudyakov
Nat Commun 2012 3789
Similar articles in PubMed
DOI:
10.1038/ncomms1794
Hepatitis C virus antigenic convergence.
David S Campo
,
Zoya Dimitrova
,
Jonny Yokosawa
,
Duc Hoang
,
Nestor O Perez
,
Sumathi Ramachandran
, and
Yury Khudyakov
Scientific reports 2012 2267
Similar articles in PubMed
DOI:
10.1038/srep00267
Evaluation of intra-host variants of the entire hepatitis B virus genome.
Sumathi Ramachandran
, Xiangjun Zhai,
Hong Thai
,
Davis S Campo
,
Guoliang Xia
,
Lilia M Ganova-Raeva
,
Jan Drobeniuc
, and
Yury E Khudyakov
PLoS ONE 2011 6(9) e25232
Similar articles in PubMed
DOI:
10.1371/journal.pone.0025232
Genotypic distribution of hepatitis B virus (HBV) among acute cases of HBV infection, selected United States counties, 1999-2005.
Eyasu H Teshale
,
Sumathi Ramachandran
,
Guo-Liang Xia
,
Henry Roberts
,
Justina Groeger
,
Vaughn Barry
,
Dale J Hu
,
Scott D Holmberg
,
Deborah Holtzman
,
John W Ward
,
Chong-Gee Teo
, and
Yuri Khudyakov
Clin. Infect. Dis. 2011 Oct 53(8) 751-6
Similar articles in PubMed
DOI:
10.1093/cid/cir495
Temporal variations in the hepatitis C virus intrahost population during chronic infection.
Sumathi Ramachandran
,
David S Campo
,
Zoya E Dimitrova
,
Guo-Liang Xia
,
Michael A Purdy
, and
Yury E Khudyakov
J. Virol. 2011 Jul 85(13) 6369-80
Similar articles in PubMed
DOI:
10.1128/JVI.02204-10
File Formats Help:
How do I view different file formats (PDF, DOC, PPT, MPEG) on this site?
Adobe PDF file
Microsoft PowerPoint file
Microsoft Word file
Microsoft Excel file
Audio/Video file
Apple Quicktime file
RealPlayer file
Text file
Zip Archive file
SAS file
ePub file
Page last reviewed:
Feb 1, 2023
Page last updated:
Feb 01, 2023
Content source:
Office of Genomics and Precision Public Health
,
CDC Office of Science
TOP