CDC-Authored Genomics and Precision Health Publications Database
Last data update: Dec 11, 2023. (Total: 4787 publications since 2011)
| Query Trace: all>>Pavel Skums[CDC Author] |
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| Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants.
Tsyvina V , Campo DS , Sims S , Zelikovsky A , Khudyakov Y , Skums P . BMC Bioinformatics 2018 19 360 
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| QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data.
Skums P , Zelikovsky A , Singh R , Gussler W , Dimitrova Z , Knyazev S , Mandric I , Ramachandran S , Campo D , Jha D , Bunimovich L , Costenbader E , Sexton C , O'Connor S , Xia GL , Khudyakov Y . Bioinformatics 2018 34 (1) 163-170
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| Inference of genetic relatedness between viral quasispecies from sequencing data.
Glebova O , Knyazev S , Melnyk A , Artyomenko A , Khudyakov Y , Zelikovsky A , Skums P . BMC Genomics 2017 18 918 |
| GHOST: global hepatitis outbreak and surveillance technology.
Longmire AG , Sims S , Rytsareva I , Campo DS , Skums P , Dimitrova Z , Ramachandran S , Medrzycki M , Thai H , Ganova-Raeva L , Lin Y , Punkova LT , Sue A , Mirabito M , Wang S , Tracy R , Bolet V , Sukalac T , Lynberg C , Khudyakov Y . BMC Genomics 2017 18 916 |
| Increased Mitochondrial Genetic Diversity in Persons Infected With Hepatitis C Virus.
Campo David S, Roh Ha-Jung, Pearlman Brian L, Fierer Daniel S, Ramachandran Sumathi, Vaughan Gilberto, Hinds Andrew, Dimitrova Zoya, Skums Pavel, Khudyakov Yury.Cellular and molecular gastroenterology and hepatology 2016 Sep (5) 676-684 . Cellular and molecular gastroenterology and hepatology 2016 Sep (5) 676-684 |
| Network analysis of the chronic Hepatitis C virome defines HVR1 evolutionary phenotypes in the context of humoral immune responses.
Palmer Brendan A, Schmidt-Martin Daniel, Dimitrova Zoya, Skums Pavel, Crosbie Orla, Kenny-Walsh Elizabeth, Fanning Liam J.Journal of virology 2015 Dec . Journal of virology 2015 Dec |
| Next-Generation Sequencing Reveals Frequent Opportunities for Exposure to Hepatitis C Virus in Ghana.
Forbi Joseph C, Layden Jennifer E, Phillips Richard O, Mora Nallely, Xia Guo-Liang, Campo David S, Purdy Michael A, Dimitrova Zoya E, Owusu Dorcas O, Punkova Lili T, Skums Pavel, Owusu-Ofori Shirley, Sarfo Fred Stephen, Vaughan Gilberto, Roh Hajung, Opare-Sem Ohene K, Cooper Richard S, Khudyakov Yury E. PloS one 2015 10(12) e0145530 . PloS one 2015 (12) e0145530 |
| Accurate genetic detection of hepatitis C virus transmissions in outbreak settings.
Campo D S, Xia G L, Dimitrova Z, Lin Y, Forbi J C, Ganova-Raeva L, Punkova L, Ramachandran S, Thai H, Skums P, Sims S, Rytsareva I, Vaughan G, Roh H J, Purdy M A, Sue A, Khudyakov Y. The Journal of infectious diseases 2015 Nov . The Journal of infectious diseases 2015 Nov |
| Good laboratory practice for clinical next-generation sequencing informatics pipelines.
Gargis Amy S, Kalman Lisa, Bick David P, da Silva Cristina, Dimmock David P, Funke Birgit H, Gowrisankar Sivakumar, Hegde Madhuri R, Kulkarni Shashikant, Mason Christopher E, Nagarajan Rakesh, Voelkerding Karl V, Worthey Elizabeth A, Aziz Nazneen, Barnes John, Bennett Sarah F, Bisht Himani, Church Deanna M, Dimitrova Zoya, Gargis Shaw R, Hafez Nabil, Hambuch Tina, Hyland Fiona C L, Luna Ruth Ann, MacCannell Duncan, Mann Tobias, McCluskey Megan R, McDaniel Timothy K, Ganova-Raeva Lilia M, Rehm Heidi L, Reid Jeffrey, Campo David S, Resnick Richard B, Ridge Perry G, Salit Marc L, Skums Pavel, Wong Lee-Jun C, Zehnbauer Barbara A, Zook Justin M, Lubin Ira M. Nat. Biotechnol. 2015 Jul 8. 33(7) 689-93 . Nature biotechnology 2015 Jul (7) 689-93 |
| Cryptic Hepatitis B and E in Patients With Acute Hepatitis of Unknown Etiology.
Ganova-Raeva Lilia, Punkova Lili, Campo David S, Dimitrova Zoya, Skums Pavel, Vu Nga H, Dat Do T, Dalton Harry R, Khudyakov Yury.J. Infect. Dis. 2015 Jun 8. . J. Infect. Dis. 2015 Jun 8. |
| Antigenic cooperation among intrahost HCV variants organized into a complex network of cross-immunoreactivity.
Skums Pavel, Bunimovich Leonid, Khudyakov Yury.Proc. Natl. Acad. Sci. U.S.A. 2015 May 4. . Proc. Natl. Acad. Sci. U.S.A. 2015 May 4. |
| Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling.
Skums Pavel, Artyomenko Alexander, Glebova Olga, Ramachandran Sumathi, Mandoiu Ion, Campo David S, Dimitrova Zoya, Zelikovsky Alex, Khudyakov Yury.Bioinformatics 2015 Mar 1. (5) 682-90 . Bioinformatics 2015 Mar 1. (5) 682-90 |
| Next-generation sequencing reveals large connected networks of intra-host HCV variants.
Campo David S, Dimitrova Zoya, Yamasaki Lilian, Skums Pavel, Lau Daryl Ty, Vaughan Gilberto, Forbi Joseph C, Teo Chong-Gee, Khudyakov Yury. BMC Genomics 2014 15 Suppl 5S4 . BMC Genomics 2014 15 Suppl 5S4 |
| Intra-host diversity and evolution of hepatitis C virus endemic to Côte d'Ivoire.
Forbi Joseph C, Campo David S, Purdy Michael A, Dimitrova Zoya E, Skums Pavel, Xia Guo-liang, Punkova Lili T, Ganova-Raeva Lilia M, Vaughan Gilberto, Ben-Ayed Yousr, Switzer William M, Khudyakov Yury E. J. Med. Virol. 2014 May 86(5) 765-71 . J. Med. Virol. 2014 May 86(5) 765-71 |
| Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows.
Skums Pavel, Mancuso Nicholas, Artyomenko Alexander, Tork Bassam, Mandoiu Ion, Khudyakov Yury, Zelikovsky Alex. BMC bioinformatics 2013 14 Suppl 9S2 . BMC bioinformatics 2013 14 Suppl 9S2 |
| Efficient error correction for next-generation sequencing of viral amplicons.
Skums Pavel, Dimitrova Zoya, Campo David S, Vaughan Gilberto, Rossi Livia, Forbi Joseph C, Yokosawa Jonny, Zelikovsky Alex, Khudyakov Yury. BMC bioinformatics 2012 Jun 13 Suppl 10S6 . BMC bioinformatics 2012 Jun 13 Suppl 10S6 |
- Page last reviewed:Oct 1, 2023
- Page last updated:Dec 11, 2023
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