Last data update: Jan 15, 2021. (Total: 3111 publications since 2011)
|Query Trace: all>>Pavel Skums[CDC Author]|
| Accurate spatiotemporal mapping of drug overdose deaths by machine learning of drug-related web-searches.
David S Campo, Joseph W Gussler, Amanda Sue, Pavel Skums, and Yury Khudyakov
PloS one 2020 15(12) e0243622
| Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants.
Viachaslau Tsyvina, David S Campo, Seth Sims, Alex Zelikovsky, Yury Khudyakov, and Pavel Skums
BMC bioinformatics 2018 Oct (Suppl 11) 360
| QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data.
Pavel Skums, Alex Zelikovsky, Rahul Singh, Walker Gussler, Zoya Dimitrova, Sergey Knyazev, Igor Mandric, Sumathi Ramachandran, David Campo, Deeptanshu Jha, Leonid Bunimovich, Elizabeth Costenbader, Connie Sexton, Siobhan O'Connor, Guo-Liang Xia, and Yury Khudyakov
Bioinformatics (Oxford, England) 2018 Jan (1) 163-170
| Inference of genetic relatedness between viral quasispecies from sequencing data.
Olga Glebova, Sergey Knyazev, Andrew Melnyk, Alexander Artyomenko, Yury Khudyakov, Alex Zelikovsky, and Pavel Skums
BMC genomics 2017 Dec (Suppl 10) 918
| GHOST: global hepatitis outbreak and surveillance technology.
Atkinson G Longmire, Seth Sims, Inna Rytsareva, David S Campo, Pavel Skums, Zoya Dimitrova, Sumathi Ramachandran, Magdalena Medrzycki, Hong Thai, Lilia Ganova-Raeva, Yulin Lin, Lili T Punkova, Amanda Sue, Massimo Mirabito, Silver Wang, Robin Tracy, Victor Bolet, Thom Sukalac, Chris Lynberg, and Yury Khudyakov
BMC genomics 2017 Dec (Suppl 10) 916
| Increased Mitochondrial Genetic Diversity in Persons Infected With Hepatitis C Virus.
David S Campo, Ha-Jung Roh, Brian L Pearlman, Daniel S Fierer, Sumathi Ramachandran, Gilberto Vaughan, Andrew Hinds, Zoya Dimitrova, Pavel Skums, and Yury Khudyakov
Cellular and molecular gastroenterology and hepatology 2016 Sep (5) 676-684
| Network analysis of the chronic Hepatitis C virome defines HVR1 evolutionary phenotypes in the context of humoral immune responses.
Brendan A Palmer, Daniel Schmidt-Martin, Zoya Dimitrova, Pavel Skums, Orla Crosbie, Elizabeth Kenny-Walsh, and Liam J Fanning
Journal of virology 2015 Dec
| Next-Generation Sequencing Reveals Frequent Opportunities for Exposure to Hepatitis C Virus in Ghana.
Joseph C Forbi, Jennifer E Layden, Richard O Phillips, Nallely Mora, Guo-Liang Xia, David S Campo, Michael A Purdy, Zoya E Dimitrova, Dorcas O Owusu, Lili T Punkova, Pavel Skums, Shirley Owusu-Ofori, Fred Stephen Sarfo, Gilberto Vaughan, Hajung Roh, Ohene K Opare-Sem, Richard S Cooper, and Yury E Khudyakov
PloS one 2015 (12) e0145530
| Accurate genetic detection of hepatitis C virus transmissions in outbreak settings.
David S Campo, Guo-Liang Xia, Zoya Dimitrova, Yulin Lin, Joseph C Forbi, Lilia Ganova-Raeva, Lili Punkova, Sumathi Ramachandran, Hong Thai, Pavel Skums, Seth Sims, Inna Rytsareva, Gilberto Vaughan, Ha-Jung Roh, Michael A Purdy, Amanda Sue, and Yury Khudyakov
The Journal of infectious diseases 2015 Nov
| Cryptic Hepatitis B and E in Patients With Acute Hepatitis of Unknown Etiology.
Lilia Ganova-Raeva, Lili Punkova, David S Campo, Zoya Dimitrova, Pavel Skums, Nga H Vu, Do T Dat, Harry R Dalton, and Yury Khudyakov
J. Infect. Dis. 2015 Jun 8.
| Good laboratory practice for clinical next-generation sequencing informatics pipelines.
Amy S Gargis, Lisa Kalman, David P Bick, Cristina da Silva, David P Dimmock, Birgit H Funke, Sivakumar Gowrisankar, Madhuri R Hegde, Shashikant Kulkarni, Christopher E Mason, Rakesh Nagarajan, Karl V Voelkerding, Elizabeth A Worthey, Nazneen Aziz, John Barnes, Sarah F Bennett, Himani Bisht, Deanna M Church, Zoya Dimitrova, Shaw R Gargis, Nabil Hafez, Tina Hambuch, Fiona C L Hyland, Ruth Ann Luna, Duncan MacCannell, Tobias Mann, Megan R McCluskey, Timothy K McDaniel, Lilia M Ganova-Raeva, Heidi L Rehm, Jeffrey Reid, David S Campo, Richard B Resnick, Perry G Ridge, Marc L Salit, Pavel Skums, Lee-Jun C Wong, Barbara A Zehnbauer, Justin M Zook, and Ira M Lubin
Nature biotechnology 2015 Jul (7) 689-93
| Antigenic cooperation among intrahost HCV variants organized into a complex network of cross-immunoreactivity.
Pavel Skums, Leonid Bunimovich, and Yury Khudyakov
Proc. Natl. Acad. Sci. U.S.A. 2015 May 4.
| Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling.
Pavel Skums, Alexander Artyomenko, Olga Glebova, Sumathi Ramachandran, Ion Mandoiu, David S Campo, Zoya Dimitrova, Alex Zelikovsky, and Yury Khudyakov
Bioinformatics 2015 Mar 1. (5) 682-90
| Next-generation sequencing reveals large connected networks of intra-host HCV variants.
David S Campo, Zoya Dimitrova, Lilian Yamasaki, Pavel Skums, Daryl Ty Lau, Gilberto Vaughan, Joseph C Forbi, Chong-Gee Teo, and Yury Khudyakov
BMC Genomics 2014 15 Suppl 5S4
| Intra-host diversity and evolution of hepatitis C virus endemic to Côte d'Ivoire.
Joseph C Forbi, David S Campo, Michael A Purdy, Zoya E Dimitrova, Pavel Skums, Guo-Liang Xia, Lili T Punkova, Lilia M Ganova-Raeva, Gilberto Vaughan, Yousr Ben-Ayed, William M Switzer, and Yury E Khudyakov
J. Med. Virol. 2014 May 86(5) 765-71
| Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows.
Pavel Skums, Nicholas Mancuso, Alexander Artyomenko, Bassam Tork, Ion Mandoiu, Yury Khudyakov, and Alex Zelikovsky
BMC bioinformatics 2013 14 Suppl 9S2
| Efficient error correction for next-generation sequencing of viral amplicons.
Pavel Skums, Zoya Dimitrova, David S Campo, Gilberto Vaughan, Livia Rossi, Joseph C Forbi, Jonny Yokosawa, Alex Zelikovsky, and Yury Khudyakov
BMC bioinformatics 2012 Jun 13 Suppl 10S6