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Public Health Genomics and Precision Health Knowledge Base (v8.2)
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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB
CDC-Authored Genomics and Precision Health Publications Database
Last data update: Feb 01, 2023
. (Total: 4188 publications since 2011)
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CDC Author
Year
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Records 1-16 (of 16 Records)
Query Trace:
all>>Pavel Skums[CDC Author]
Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants.
Viachaslau Tsyvina,
David S Campo
,
Seth Sims
, Alex Zelikovsky,
Yury Khudyakov
, and
Pavel Skums
BMC bioinformatics 2018 Oct (Suppl 11) 360
Similar articles in PubMed
DOI:
10.1186/s12859-018-2333-9
QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data.
Pavel Skums
, Alex Zelikovsky, Rahul Singh,
Walker Gussler
,
Zoya Dimitrova
, Sergey Knyazev, Igor Mandric,
Sumathi Ramachandran
,
David Campo
, Deeptanshu Jha, Leonid Bunimovich, Elizabeth Costenbader,
Connie Sexton
,
Siobhan O'Connor
,
Guo-Liang Xia
, and
Yury Khudyakov
Bioinformatics (Oxford, England) 2018 Jan (1) 163-170
Similar articles in PubMed
DOI:
10.1093/bioinformatics/btx402
Inference of genetic relatedness between viral quasispecies from sequencing data.
Olga Glebova, Sergey Knyazev, Andrew Melnyk, Alexander Artyomenko,
Yury Khudyakov
, Alex Zelikovsky, and
Pavel Skums
BMC genomics 2017 Dec (Suppl 10) 918
Similar articles in PubMed
DOI:
10.1186/s12864-017-4274-5
GHOST: global hepatitis outbreak and surveillance technology.
Atkinson G Longmire
,
Seth Sims
,
Inna Rytsareva
,
David S Campo
,
Pavel Skums
,
Zoya Dimitrova
,
Sumathi Ramachandran
,
Magdalena Medrzycki
,
Hong Thai
,
Lilia Ganova-Raeva
,
Yulin Lin
,
Lili T Punkova
,
Amanda Sue
,
Massimo Mirabito
,
Silver Wang
,
Robin Tracy
,
Victor Bolet
,
Thom Sukalac
,
Chris Lynberg
, and
Yury Khudyakov
BMC genomics 2017 Dec (Suppl 10) 916
Similar articles in PubMed
DOI:
10.1186/s12864-017-4268-3
Increased Mitochondrial Genetic Diversity in Persons Infected With Hepatitis C Virus.
David S Campo
,
Ha-Jung Roh
, Brian L Pearlman, Daniel S Fierer,
Sumathi Ramachandran
,
Gilberto Vaughan
, Andrew Hinds,
Zoya Dimitrova
,
Pavel Skums
, and
Yury Khudyakov
Cellular and molecular gastroenterology and hepatology 2016 Sep (5) 676-684
Similar articles in PubMed
DOI:
10.1016/j.jcmgh.2016.05.012
Network analysis of the chronic Hepatitis C virome defines HVR1 evolutionary phenotypes in the context of humoral immune responses.
Brendan A Palmer, Daniel Schmidt-Martin,
Zoya Dimitrova
,
Pavel Skums
, Orla Crosbie, Elizabeth Kenny-Walsh, and Liam J Fanning
Journal of virology 2015 Dec
Similar articles in PubMed
DOI:
10.1128/JVI.02995-15
Next-Generation Sequencing Reveals Frequent Opportunities for Exposure to Hepatitis C Virus in Ghana.
Joseph C Forbi
, Jennifer E Layden, Richard O Phillips, Nallely Mora,
Guo-Liang Xia
,
David S Campo
,
Michael A Purdy
,
Zoya E Dimitrova
, Dorcas O Owusu,
Lili T Punkova
,
Pavel Skums
, Shirley Owusu-Ofori, Fred Stephen Sarfo,
Gilberto Vaughan
,
Hajung Roh
, Ohene K Opare-Sem, Richard S Cooper, and
Yury E Khudyakov
PloS one 2015 (12) e0145530
Similar articles in PubMed
DOI:
10.1371/journal.pone.0145530
Accurate genetic detection of hepatitis C virus transmissions in outbreak settings.
David S Campo
,
Guo-Liang Xia
,
Zoya Dimitrova
,
Yulin Lin
,
Joseph C Forbi
,
Lilia Ganova-Raeva
,
Lili Punkova
,
Sumathi Ramachandran
,
Hong Thai
,
Pavel Skums
,
Seth Sims
,
Inna Rytsareva
,
Gilberto Vaughan
,
Ha-Jung Roh
,
Michael A Purdy
,
Amanda Sue
, and
Yury Khudyakov
The Journal of infectious diseases 2015 Nov
Similar articles in PubMed
DOI:
10.1093/infdis/jiv542
Good laboratory practice for clinical next-generation sequencing informatics pipelines.
Amy S Gargis
,
Lisa Kalman
, David P Bick, Cristina da Silva, David P Dimmock, Birgit H Funke, Sivakumar Gowrisankar, Madhuri R Hegde, Shashikant Kulkarni, Christopher E Mason, Rakesh Nagarajan, Karl V Voelkerding, Elizabeth A Worthey, Nazneen Aziz,
John Barnes
, Sarah F Bennett, Himani Bisht, Deanna M Church,
Zoya Dimitrova
,
Shaw R Gargis
, Nabil Hafez, Tina Hambuch, Fiona C L Hyland, Ruth Ann Luna,
Duncan MacCannell
, Tobias Mann, Megan R McCluskey, Timothy K McDaniel,
Lilia M Ganova-Raeva
, Heidi L Rehm, Jeffrey Reid, David S Campo, Richard B Resnick, Perry G Ridge, Marc L Salit,
Pavel Skums
, Lee-Jun C Wong,
Barbara A Zehnbauer
, Justin M Zook, and
Ira M Lubin
Nature biotechnology 2015 Jul (7) 689-93
Similar articles in PubMed
DOI:
10.1038/nbt.3237
Cryptic Hepatitis B and E in Patients With Acute Hepatitis of Unknown Etiology.
Lilia Ganova-Raeva
,
Lili Punkova
,
David S Campo
,
Zoya Dimitrova
,
Pavel Skums
, Nga H Vu, Do T Dat, Harry R Dalton, and
Yury Khudyakov
J. Infect. Dis. 2015 Jun 8.
Similar articles in PubMed
DOI:
10.1093/infdis/jiv315
Antigenic cooperation among intrahost HCV variants organized into a complex network of cross-immunoreactivity.
Pavel Skums
, Leonid Bunimovich, and
Yury Khudyakov
Proc. Natl. Acad. Sci. U.S.A. 2015 May 4.
Similar articles in PubMed
DOI:
10.1073/pnas.1422942112
Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling.
Pavel Skums
,
Alexander Artyomenko
,
Olga Glebova
,
Sumathi Ramachandran
,
Ion Mandoiu
,
David S Campo
,
Zoya Dimitrova
,
Alex Zelikovsky
, and
Yury Khudyakov
Bioinformatics 2015 Mar 1. (5) 682-90
Similar articles in PubMed
DOI:
10.1093/bioinformatics/btu726
Next-generation sequencing reveals large connected networks of intra-host HCV variants.
David S Campo
,
Zoya Dimitrova
, Lilian Yamasaki,
Pavel Skums
, Daryl Ty Lau, Gilberto Vaughan,
Joseph C Forbi
, Chong-Gee Teo, and
Yury Khudyakov
BMC Genomics 2014 15 Suppl 5S4
Similar articles in PubMed
DOI:
10.1186/1471-2164-15-S5-S4
Intra-host diversity and evolution of hepatitis C virus endemic to Côte d'Ivoire.
Joseph C Forbi
,
David S Campo
,
Michael A Purdy
,
Zoya E Dimitrova
,
Pavel Skums
,
Guo-Liang Xia
,
Lili T Punkova
,
Lilia M Ganova-Raeva
,
Gilberto Vaughan
,
Yousr Ben-Ayed
,
William M Switzer
, and
Yury E Khudyakov
J. Med. Virol. 2014 May 86(5) 765-71
Similar articles in PubMed
DOI:
10.1002/jmv.23897
Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows.
Pavel Skums
, Nicholas Mancuso, Alexander Artyomenko, Bassam Tork, Ion Mandoiu,
Yury Khudyakov
, and Alex Zelikovsky
BMC bioinformatics 2013 14 Suppl 9S2
Similar articles in PubMed
DOI:
10.1186/1471-2105-14-S9-S2
Efficient error correction for next-generation sequencing of viral amplicons.
Pavel Skums
,
Zoya Dimitrova
,
David S Campo
,
Gilberto Vaughan
,
Livia Rossi
,
Joseph C Forbi
, Jonny Yokosawa, Alex Zelikovsky, and
Yury Khudyakov
BMC bioinformatics 2012 Jun 13 Suppl 10S6
Similar articles in PubMed
DOI:
10.1186/1471-2105-13-S10-S6
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Page last reviewed:
Feb 1, 2023
Page last updated:
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Content source:
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,
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