CDC-Authored Genomics and Precision Health Publications Database

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Last data update: Jun 28, 2022. (Total: 3910 publications since 2011)

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Records 1-16 (of 16 Records)

Query Trace: all>>Pavel Skums[CDC Author]
Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows. Pavel Skums, Nicholas Mancuso, Alexander Artyomenko, Bassam Tork, Ion Mandoiu, Yury Khudyakov, and Alex Zelikovsky BMC bioinformatics 2013 14 Suppl 9S2 Similar articles in PubMed DOI:10.1186/1471-2105-14-S9-S2
Efficient error correction for next-generation sequencing of viral amplicons. Pavel Skums, Zoya Dimitrova, David S Campo, Gilberto Vaughan, Livia Rossi, Joseph C Forbi, Jonny Yokosawa, Alex Zelikovsky, and Yury Khudyakov BMC bioinformatics 2012 Jun 13 Suppl 10S6 Similar articles in PubMed DOI:10.1186/1471-2105-13-S10-S6
Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants. Viachaslau Tsyvina, David S Campo, Seth Sims, Alex Zelikovsky, Yury Khudyakov, and Pavel Skums BMC bioinformatics 2018 Oct (Suppl 11) 360 Similar articles in PubMed DOI:10.1186/s12859-018-2333-9
QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data. Pavel Skums, Alex Zelikovsky, Rahul Singh, Walker Gussler, Zoya Dimitrova, Sergey Knyazev, Igor Mandric, Sumathi Ramachandran, David Campo, Deeptanshu Jha, Leonid Bunimovich, Elizabeth Costenbader, Connie Sexton, Siobhan O'Connor, Guo-Liang Xia, and Yury Khudyakov Bioinformatics (Oxford, England) 2018 Jan (1) 163-170 Similar articles in PubMed DOI:10.1093/bioinformatics/btx402
GHOST: global hepatitis outbreak and surveillance technology. Atkinson G Longmire, Seth Sims, Inna Rytsareva, David S Campo, Pavel Skums, Zoya Dimitrova, Sumathi Ramachandran, Magdalena Medrzycki, Hong Thai, Lilia Ganova-Raeva, Yulin Lin, Lili T Punkova, Amanda Sue, Massimo Mirabito, Silver Wang, Robin Tracy, Victor Bolet, Thom Sukalac, Chris Lynberg, and Yury Khudyakov BMC genomics 2017 Dec (Suppl 10) 916 Similar articles in PubMed DOI:10.1186/s12864-017-4268-3
Inference of genetic relatedness between viral quasispecies from sequencing data. Olga Glebova, Sergey Knyazev, Andrew Melnyk, Alexander Artyomenko, Yury Khudyakov, Alex Zelikovsky, and Pavel Skums BMC genomics 2017 Dec (Suppl 10) 918 Similar articles in PubMed DOI:10.1186/s12864-017-4274-5
Increased Mitochondrial Genetic Diversity in Persons Infected With Hepatitis C Virus. David S Campo, Ha-Jung Roh, Brian L Pearlman, Daniel S Fierer, Sumathi Ramachandran, Gilberto Vaughan, Andrew Hinds, Zoya Dimitrova, Pavel Skums, and Yury Khudyakov Cellular and molecular gastroenterology and hepatology 2016 Sep (5) 676-684 Similar articles in PubMed DOI:10.1016/j.jcmgh.2016.05.012
Network analysis of the chronic Hepatitis C virome defines HVR1 evolutionary phenotypes in the context of humoral immune responses. Brendan A Palmer, Daniel Schmidt-Martin, Zoya Dimitrova, Pavel Skums, Orla Crosbie, Elizabeth Kenny-Walsh, and Liam J Fanning Journal of virology 2015 Dec Similar articles in PubMed DOI:10.1128/JVI.02995-15
Next-Generation Sequencing Reveals Frequent Opportunities for Exposure to Hepatitis C Virus in Ghana. Joseph C Forbi, Jennifer E Layden, Richard O Phillips, Nallely Mora, Guo-Liang Xia, David S Campo, Michael A Purdy, Zoya E Dimitrova, Dorcas O Owusu, Lili T Punkova, Pavel Skums, Shirley Owusu-Ofori, Fred Stephen Sarfo, Gilberto Vaughan, Hajung Roh, Ohene K Opare-Sem, Richard S Cooper, and Yury E Khudyakov PloS one 2015 (12) e0145530 Similar articles in PubMed DOI:10.1371/journal.pone.0145530
Accurate genetic detection of hepatitis C virus transmissions in outbreak settings. David S Campo, Guo-Liang Xia, Zoya Dimitrova, Yulin Lin, Joseph C Forbi, Lilia Ganova-Raeva, Lili Punkova, Sumathi Ramachandran, Hong Thai, Pavel Skums, Seth Sims, Inna Rytsareva, Gilberto Vaughan, Ha-Jung Roh, Michael A Purdy, Amanda Sue, and Yury Khudyakov The Journal of infectious diseases 2015 Nov Similar articles in PubMed DOI:10.1093/infdis/jiv542
Cryptic Hepatitis B and E in Patients With Acute Hepatitis of Unknown Etiology. Lilia Ganova-Raeva, Lili Punkova, David S Campo, Zoya Dimitrova, Pavel Skums, Nga H Vu, Do T Dat, Harry R Dalton, and Yury Khudyakov J. Infect. Dis. 2015 Jun 8. Similar articles in PubMed DOI:10.1093/infdis/jiv315
Good laboratory practice for clinical next-generation sequencing informatics pipelines. Amy S Gargis, Lisa Kalman, David P Bick, Cristina da Silva, David P Dimmock, Birgit H Funke, Sivakumar Gowrisankar, Madhuri R Hegde, Shashikant Kulkarni, Christopher E Mason, Rakesh Nagarajan, Karl V Voelkerding, Elizabeth A Worthey, Nazneen Aziz, John Barnes, Sarah F Bennett, Himani Bisht, Deanna M Church, Zoya Dimitrova, Shaw R Gargis, Nabil Hafez, Tina Hambuch, Fiona C L Hyland, Ruth Ann Luna, Duncan MacCannell, Tobias Mann, Megan R McCluskey, Timothy K McDaniel, Lilia M Ganova-Raeva, Heidi L Rehm, Jeffrey Reid, David S Campo, Richard B Resnick, Perry G Ridge, Marc L Salit, Pavel Skums, Lee-Jun C Wong, Barbara A Zehnbauer, Justin M Zook, and Ira M Lubin Nature biotechnology 2015 Jul (7) 689-93 Similar articles in PubMed DOI:10.1038/nbt.3237
Intra-host diversity and evolution of hepatitis C virus endemic to Côte d'Ivoire. Joseph C Forbi, David S Campo, Michael A Purdy, Zoya E Dimitrova, Pavel Skums, Guo-Liang Xia, Lili T Punkova, Lilia M Ganova-Raeva, Gilberto Vaughan, Yousr Ben-Ayed, William M Switzer, and Yury E Khudyakov J. Med. Virol. 2014 May 86(5) 765-71 Similar articles in PubMed DOI:10.1002/jmv.23897
Next-generation sequencing reveals large connected networks of intra-host HCV variants. David S Campo, Zoya Dimitrova, Lilian Yamasaki, Pavel Skums, Daryl Ty Lau, Gilberto Vaughan, Joseph C Forbi, Chong-Gee Teo, and Yury Khudyakov BMC Genomics 2014 15 Suppl 5S4 Similar articles in PubMed DOI:10.1186/1471-2164-15-S5-S4
Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling. Pavel Skums, Alexander Artyomenko, Olga Glebova, Sumathi Ramachandran, Ion Mandoiu, David S Campo, Zoya Dimitrova, Alex Zelikovsky, and Yury Khudyakov Bioinformatics 2015 Mar 1. (5) 682-90 Similar articles in PubMed DOI:10.1093/bioinformatics/btu726
Antigenic cooperation among intrahost HCV variants organized into a complex network of cross-immunoreactivity. Pavel Skums, Leonid Bunimovich, and Yury Khudyakov Proc. Natl. Acad. Sci. U.S.A. 2015 May 4. Similar articles in PubMed DOI:10.1073/pnas.1422942112