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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Mar 30, 2023. (Total: 4251 publications since 2011)
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Records 1-18 (of 18 Records)
Query Trace: all>>Kristen Knipe[CDC Author]
Transmission potential of vaccinated and unvaccinated persons infected with the SARS-CoV-2 Delta variant in a federal prison, July-August 2021.
Phillip P Salvatore, Christine C Lee, Sadia Sleweon, David W McCormick, Lavinia Nicolae, Kristen Knipe, Tom Dixon, Robert Banta, Isaac Ogle, Cristen Young, Charles Dusseau, Shawn Salmonson, Charles Ogden, Eric Godwin, TeCora Ballom, Tara Rhodes, Nhien Tran Wynn, Ebenezer David, Theresa K Bessey, Gimin Kim, Suganthi Suppiah, Azaibi Tamin, Jennifer L Harcourt, Mili Sheth, Luis Lowe, Hannah Browne, Jacqueline E Tate, Hannah L Kirking, and Liesl M Hagan
Vaccine 2022
Benchmark datasets for SARS-CoV-2 surveillance bioinformatics.
Lingzi Xiaoli, Jill V Hagey, Daniel J Park, Christopher A Gulvik, Erin L Young, Nabil-Fareed Alikhan, Adrian Lawsin, Norman Hassell, Kristen Knipe, Kelly F Oakeson, Adam C Retchless, Migun Shakya, Chien-Chi Lo, Patrick Chain, Andrew J Page, Benjamin J Metcalf, Michelle Su, Jessica Rowell, Eshaw Vidyaprakash, Clinton R Paden, Andrew D Huang, Dawn Roellig, Ketan Patel, Kathryn Winglee, Michael R Weigand, and Lee S Katz
PeerJ 2022 10e13821
Conserved Patterns of Symmetric Inversion in the Genome Evolution of Bordetella Respiratory Pathogens.
Michael R Weigand, Yanhui Peng, Dhwani Batra, Mark Burroughs, Jamie K Davis, Kristen Knipe, Vladimir N Loparev, Taccara Johnson, Phalasy Juieng, Lori A Rowe, Mili Sheth, Kevin Tang, Yvette Unoarumhi, Margaret M Williams, and M Lucia Tondella
mSystems 2019 Nov (6)
Conjugal Transfer, Whole Genome Sequencing, and Plasmid Analysis of Four mcr-1 -bearing Isolates from U.S. Patients.
Wenming Zhu, Adrian Lawsin, Rebecca L Lindsey, Dhwani Batra, Kristen Knipe, Brian B Yoo, K Allison Perry, Lori A Rowe, David Lonsway, Maroya S Waters, J Kamile Rasheed, and Alison Laufer Halpin
Antimicrobial agents and chemotherapy 2019 Feb
High-Quality Whole-Genome Sequences for 59 Historical Shigella Strains Generated with PacBio Sequencing.
Justin Kim, Rebecca L Lindsey, Lisley Garcia-Toledo, Vladimir N Loparev, Lori A Rowe, Dhwani Batra, Phalasy Juieng, Devon Stoneburg, Haley Martin, Kristen Knipe, Peyton Smith, and Nancy Strockbine
Genome announcements 2018 Apr (15)
Distinct evolutionary patterns of Neisseria meningitidis serogroup B disease outbreaks at two universities in the USA.
Li Hao, Matthew T G Holden, Xin Wang, Lubomira Andrew, Sabine Wellnitz, Fang Hu, Melissa Whaley, Scott Sammons, Kristen Knipe, Mike Frace, Lucy A McNamara, Paul Liberator, and Annaliesa S Anderson
Microbial genomics 2018 Apr
Screening and genomic characterization of filamentous hemagglutinin-deficient Bordetella pertussis.
Michael R Weigand, Lucia C Pawloski, Yanhui Peng, Hong Ju, Mark Burroughs, Pamela K Cassiday, Jamie K Davis, Marina DuVall, Taccara Johnson, Phalasy Juieng, Kristen Knipe, Vladimir N Loparev, Marsenia H Mathis, Lori A Rowe, Mili Sheth, Margaret M Williams, and M Lucia Tondella
Infection and immunity 2018 Jan
High-Quality Whole-Genome Sequences for 21 Enterotoxigenic Escherichia coli Strains Generated with PacBio Sequencing.
Peyton Smith, Rebecca L Lindsey, Lori A Rowe, Dhwani Batra, Devon Stripling, Lisley Garcia-Toledo, Daniel Drapeau, Kristen Knipe, and Nancy Strockbine
Genome announcements 2018 Jan 6(2)
High-Quality Complete and Draft Genome Sequences for Three Escherichia spp. and Three Shigella spp. Generated with Pacific Biosciences and Illumina Sequencing and Optical Mapping.
Max R Schroeder, Phalasy Juieng, Dhwani Batra, Kristen Knipe, Lori A Rowe, Mili Sheth, Peyton Smith, Lisley Garcia-Toledo, Vladimir N Loparev, and Rebecca L Lindsey
Genome announcements 2018 Jan (1)
High-Quality Genome Sequence of an Escherichia coli O157 Strain Carrying an mcr-1 Resistance Gene Isolated from a Patient in the United States.
Rebecca L Lindsey, Dhwani Batra, Lori Rowe, Vladimir N Loparev, Devon Stripling, Lisley Garcia-Toledo, Kristen Knipe, Phalasy Juieng, Mili Sheth, Haley Martin, and Alison Laufer Halpin
Genome announcements 2017 Mar (11)
The History of Bordetella pertussis Genome Evolution Includes Structural Rearrangement.
Michael R Weigand, Yanhui Peng, Vladimir Loparev, Dhwani Batra, Katherine E Bowden, Mark Burroughs, Pamela K Cassiday, Jamie K Davis, Taccara Johnson, Phalasy Juieng, Kristen Knipe, Marsenia H Mathis, Andrea M Pruitt, Lori Rowe, Mili Sheth, M Lucia Tondella, and Margaret M Williams
Journal of bacteriology 2017 Feb
The Establishment and Diversification of Epidemic-Associated Serogroup W Meningococcus in the African Meningitis Belt, 1994 to 2012.
Adam C Retchless, Fang Hu, Abdoul-Salam Ouédraogo, Seydou Diarra, Kristen Knipe, Mili Sheth, Lori A Rowe, Lassana Sangaré, Absetou Ky Ba, Soumeya Ouangraoua, Dhwani Batra, Ryan T Novak, Rasmata Ouédraogo Traoré, and Xin Wang
mSphere 1(6)
High-Quality Draft Genome Sequences for Five Non-O157 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing and Optical Maps.
Rebecca L Lindsey, Lori Rowe, Lisley Garcia-Toledo, Vladimir Loparev, Kristen Knipe, Devon Stripling, Haley Martin, Eija Trees, Phalasy Juieng, Dhwani Batra, and Nancy Strockbine
Genome announcements 2016 (3)
Complete Genome Sequences of Four Strains from the 2015-2016 Elizabethkingia anophelis Outbreak.
Ainsley C Nicholson, Anne M Whitney, Brian D Emery, Melissa E Bell, Jarrett T Gartin, Ben W Humrighouse, Vladimir N Loparev, Dhwani Batra, Mili Sheth, Lori A Rowe, Phalasy Juieng, Kristen Knipe, Christopher Gulvik, and John R McQuiston
Genome announcements 2016 (3)
Genome Structural Diversity among 31 Bordetella pertussis Isolates from Two Recent U.S. Whooping Cough Statewide Epidemics.
Katherine E Bowden, Michael R Weigand, Yanhui Peng, Pamela K Cassiday, Scott Sammons, Kristen Knipe, Lori A Rowe, Vladimir Loparev, Mili Sheth, Keeley Weening, M Lucia Tondella, and Margaret M Williams
mSphere 1(3)
Complete Genome Sequences of Two Shiga Toxin-Producing Escherichia coli Strains from Serotypes O119:H4 and O165:H25.
Rebecca L Lindsey, Kristen Knipe, Lori Rowe, Lisley Garcia-Toledo, Vladimir Loparev, Phalasy Juieng, Eija Trees, Nancy Strockbine, Devon Stripling, and Peter Gerner-Smidt
Genome announcements 2015 3(6)
Finished Annotated Genome Sequence of Burkholderia pseudomallei Strain Bp1651, a Multidrug-Resistant Clinical Isolate.
Julia V Bugrysheva, David Sue, Janetta Hakovirta, Vladimir N Loparev, Kristen Knipe, Scott A Sammons, Satishkumar Ranganathan-Ganakammal, Shankar Changayil, Ganesh Srinivasamoorthy, Michael R Weil, Roman L Tatusov, Jay E Gee, Mindy G Elrod, Alex R Hoffmaster, and Linda M Weigel
Genome announcements (6)
Draft Whole-Genome Sequences of Nine Non-O157 Shiga Toxin-Producing Escherichia coli Strains.
Rebecca L Lindsey, Eija Trees, Scott Sammons, Vladimir Loparev, Mike Frace, Nancy Strockbine, Ashley L Sabol, Evan Sowers, Devon Stripling, Haley Martin, Kristen Knipe, Lori Rowe, and Peter Gerner-Smidt
Genome Announc 2014 2(4)
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