CDC-Authored Genomics and Precision Health Publications Database
Last data update: Feb 24, 2021. (Total: 3169 publications since 2011)
| Query Trace: all>>Shawn R Lockhart[CDC Author] |
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| Performance evaluation of fungal DNA PCR amplification from formalin-fixed paraffin-embedded tissue for diagnosis; experience of a tertiary reference laboratory. Colleen Lysen, Luciana Silva-Flannery, Sherif R Zaki, Joy M Gary, and Shawn R Lockhart Mycoses 2021 Feb |
| Identification of Candida auris and related species by multiplex PCR based on unique GPI protein-encoding genes. María Alvarado, Joaquín Bartolomé Álvarez, Shawn R Lockhart, Eulogio Valentín, Alba Cecilia Ruiz-Gaitán, Elena Eraso, and Piet W J de Groot Mycoses 2020 Oct |
| Ibrexafungerp: A Novel Oral Triterpenoid Antifungal in Development for the Treatment of Candida auris Infections. Mahmoud Ghannoum, Maiken Cavling Arendrup, Vishnu P Chaturvedi, Shawn R Lockhart, Thomas S McCormick, Sudha Chaturvedi, Elizabeth L Berkow, Deven Juneja, Bansidhar Tarai, Nkechi Azie, David Angulo, and Thomas J Walsh Antibiotics (Basel, Switzerland) 2020 Aug 9(9) |
| Understanding the Emergence of Multidrug-Resistant Candida : Using Whole-Genome Sequencing to Describe the Population Structure of Candida haemulonii Species Complex. Lalitha Gade, Jose F Muñoz, Mili Sheth, Darlene Wagner, Elizabeth L Berkow, Kaitlin Forsberg, Brendan R Jackson, Ruben Ramos-Castro, Patricia Escandón, Maribel Dolande, Ronen Ben-Ami, Andrés Espinosa-Bode, Diego H Caceres, Shawn R Lockhart, Christina A Cuomo, and Anastasia P Litvintseva Frontiers in genetics 2020 11554 |
| Mutations in TAC1B : a Novel Genetic Determinant of Clinical Fluconazole Resistance in Candida auris. Jeffrey M Rybak, José F Muñoz, Katherine S Barker, Josie E Parker, Brooke D Esquivel, Elizabeth L Berkow, Shawn R Lockhart, Lalitha Gade, Glen E Palmer, Theodore C White, Steve L Kelly, Christina A Cuomo, and P David Rogers mBio 2020 May (3) |
| Tracing the Evolutionary History and Global Expansion of Candida auris Using Population Genomic Analyses. Nancy A Chow, José F Muñoz, Lalitha Gade, Elizabeth L Berkow, Xiao Li, Rory M Welsh, Kaitlin Forsberg, Shawn R Lockhart, Rodney Adam, Alexandre Alanio, Ana Alastruey-Izquierdo, Sahar AlThawadi, Ana Belén Araúz, Ronen Ben-Ami, Amrita Bharat, Belinda Calvo, Marie Desnos-Ollivier, Patricia Escandón, Dianne Gardam, Revathi Gunturu, Christopher H Heath, Oliver Kurzai, Ronny Martin, Anastasia P Litvintseva, and Christina A Cuomo mBio 2020 Apr (2) |
| Fluconazole-resistant Candida parapsilosis strains with a Y132F substitution in the ERG11 gene causing invasive infections in a neonatal unit, South Africa. Rindidzani E Magobo, Shawn R Lockhart, Nelesh P Govender, and Mycoses 2020 Mar |
| Identification of Candida auris using the updated 8.01 VITEK®2 yeast identification system: a multi-laboratory evaluation study. Georges Ambaraghassi, Philippe J Dufresne, Simon F Dufresne, Émilie Vallières, José F Muñoz, Christina A Cuomo, Elizabeth L Berkow, Shawn R Lockhart, and Me-Linh Luong Journal of clinical microbiology 2019 Aug |
| Molecular typing of clinical and environmental isolates of Cryptococcus gattii species complex from Southern California, United States. Steven Hurst, Colleen Lysen, Gail Cooksey, Duc J Vugia, Anastasia P Litvintseva, and Shawn R Lockhart Mycoses 2019 Aug |
| On the Origins of a Species: What Might Explain the Rise of Candida auris ? Brendan R Jackson, Nancy Chow, Kaitlin Forsberg, Anastasia P Litvintseva, Shawn R Lockhart, Rory Welsh, Snigdha Vallabhaneni, and Tom Chiller Journal of fungi (Basel, Switzerland) 2019 Jul (3) |
| Candida auris : An Emerging Yeast Pathogen Posing Distinct Challenges for Laboratory Diagnostics, Treatment, and Infection Prevention. D Jane Hata, Romney Humphries, Shawn R Lockhart, and Archives of pathology & laboratory medicine 2020 01 (1) 107-114 |
| GENOTYPES AND POPULATION GENETICS OF CRYPTOCOCCUS NEOFORMANS AND CRYPTOCOCCUS GATTII SPECIES COMPLEXES IN EUROPE AND THE MEDITERRANEAN AREA. Massimo Cogliati, Marie Desnos-Ollivier, Ilka McCormick-Smith, Volker Rickerts, Kennio Ferreira-Paim, Wieland Meyer, Teun Boekhout, Ferry Hagen, Bart Theelen, Joäo Inácio, Beatriz Alonso, Maria F Colom, Luciana Trilles, Maria Teresa Montagna, Antonella De Donno, Serdar Susever, Cagri Ergin, Aristea Velegraki, Mohamed S Ellabib, Simona Nardoni, Cristina Macci, Laura Trovato, Ludovico Dipineto, Sevim Akcaglar, Emilija Mlinaric-Missoni, Sebastien Bertout, Ana C F Vencá, Ana C Sampaio, Giuseppe Criseo, Stéphane Ranque, Nilgün Çerikçioglu, Anna Marchese, Luigi Vezzulli, Macit Ilkit, Vincenzo Pasquale, Itzhack Polacheck, and Shawn R Lockhart Fungal genetics and biology : FG & B 2019 Apr |
| A high-throughput and rapid method for accurate identification of emerging multidrug-resistant Candida auris. Ausaf Ahmad, Jonathan E Spencer, Shawn R Lockhart, Sabrina Singleton, David J Petway, Dennis A Bagarozzi, and Owen T Herzegh Mycoses 2019 Jun (6) 513-518 |
| Timing the Origin of Cryptococcus gattii sensu stricto, Southeastern United States. Shawn R Lockhart, Chandler C Roe, and David M Engelthaler Emerging infectious diseases 2018 Nov 24(11) 2095-2097 |
| Multiple introductions and subsequent transmission of multidrug-resistant Candida auris in the USA: a molecular epidemiological survey. Nancy A Chow, Lalitha Gade, Sharon V Tsay, Kaitlin Forsberg, Jane A Greenko, Karen L Southwick, Patricia M Barrett, Janna L Kerins, Shawn R Lockhart, Tom M Chiller, Anastasia P Litvintseva, and The Lancet. Infectious diseases 2018 Oct |
| Multidrug-Resistant Aspergillus fumigatus Carrying Mutations Linked to Environmental Fungicide Exposure - Three States, 2010-2017. Karlyn D Beer, Eileen C Farnon, Seema Jain, Carol Jamerson, Sarah Lineberger, Jeffrey Miller, Elizabeth L Berkow, Shawn R Lockhart, Tom Chiller, and Brendan R Jackson MMWR. Morbidity and mortality weekly report 2018 Sep (38) 1064-1067 |
| Molecular epidemiology of Candida auris in Colombia reveals a highly-related, country-wide colonization with regional patterns in Amphotericin B resistance. Patricia Escandón, Nancy A Chow, Diego H Caceres, Lalitha Gade, Elizabeth L Berkow, Paige Armstrong, Sandra Rivera, Elizabeth Misas, Carolina Duarte, Heather Moulton-Meissner, Rory M Welsh, Claudia Parra, Luz Angela Pescador, Nohora Villalobos, Soraya Salcedo, Indira Berrio, Carmen Varón, Andrés Espinosa-Bode, Shawn R Lockhart, Brendan R Jackson, Anastasia P Litvintseva, Mauricio Beltran, and Tom M Chiller Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2018 May |
| Detection of TR 34 /L98H CYP51A Mutation through Passive Surveillance for Azole-Resistant Aspergillus fumigatus in the United States from 2015 to 2017. Elizabeth L Berkow, Natalie S Nunnally, Alex Bandea, Randall Kuykendall, Karlyn Beer, and Shawn R Lockhart Antimicrobial agents and chemotherapy 2018 62(5) |
| Dating the Cryptococcus gattii Dispersal to the North American Pacific Northwest. Chandler C Roe, Jolene Bowers, Hanna Oltean, Emilio DeBess, Philippe J Dufresne, Scott McBurney, David P Overy, Bodo Wanke, Colleen Lysen, Tom Chiller, Wieland Meyer, George R Thompson, Shawn R Lockhart, Crystal M Hepp, and David M Engelthaler mSphere (1) |
| Molecular characterization of Cryptococcus neoformans and Cryptococcus gattii from environmental sources and genetic comparison with clinical isolates in Apulia, Italy. Maria Teresa Montagna, Antonella De Donno, Giuseppina Caggiano, Francesca Serio, Osvalda De Giglio, Francesco Bagordo, R D'Amicis, Shawn R Lockhart, and Massimo Cogliati Environmental research 2018 Jan 347-352 |
| Rapid and accurate molecular identification of the emerging multidrug resistant pathogen Candida auris. Milena Kordalewska, Yanan Zhao, Shawn R Lockhart, Anuradha Chowdhary, Indira Berrio, and David S Perlin Journal of clinical microbiology 2017 May |
| Detection of neonatal unit clusters of Candida parapsilosis fungaemia by microsatellite genotyping: Results from laboratory-based sentinel surveillance, South Africa, 2009-2010. Rindidzani E Magobo, Serisha D Naicker, Jeannette Wadula, Maphoshane Nchabeleng, Yacoob Coovadia, Anwar Hoosen, Shawn R Lockhart, Nelesh P Govender, and Mycoses 2017 Jan |
| Simultaneous Emergence of Multidrug-Resistant Candida auris on 3 Continents Confirmed by Whole-Genome Sequencing and Epidemiological Analyses. Shawn R Lockhart, Kizee A Etienne, Snigdha Vallabhaneni, Joveria Farooqi, Anuradha Chowdhary, Nelesh P Govender, Arnaldo Lopes Colombo, Belinda Calvo, Christina A Cuomo, Christopher A Desjardins, Elizabeth L Berkow, Mariana Castanheira, Rindidzani E Magobo, Kauser Jabeen, Rana J Asghar, Jacques F Meis, Brendan Jackson, Tom Chiller, and Anastasia P Litvintseva Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 Jan 64(2) 134-140 |
| Detection of mucormycetes and other pathogenic fungi in formalin fixed paraffin embedded and fresh tissues using the extended region of 28S rDNA. Lalitha Gade, Steven Hurst, S Arunmozhi Balajee, Shawn R Lockhart, and Anastasia P Litvintseva Medical mycology 2016 Sep |
| Population Genetic Analysis Reveals a High Genetic Diversity in the Brazilian Cryptococcus gattii VGII Population and Shifts the Global Origin from the Amazon Rainforest to the Semi-arid Desert in the Northeast of Brazil. Ana C P Souto, Lucas X Bonfietti, Kennio Ferreira-Paim, Luciana Trilles, Marilena Martins, Marcelo Ribeiro-Alves, Cau D Pham, Liline Martins, Wallace Dos Santos, Marilene Chang, Fabio Brito-Santos, Dayane C S Santos, Silvana Fortes, Shawn R Lockhart, Bodo Wanke, Márcia S C Melhem, Márcia S Lazéra, and Wieland Meyer PLoS neglected tropical diseases 2016 Aug (8) e0004885 |
| MLST and Whole-Genome-Based Population Analysis of Cryptococcus gattii VGIII Links Clinical, Veterinary and Environmental Strains, and Reveals Divergent Serotype Specific Sub-populations and Distant Ancestors. Carolina Firacative, Chandler C Roe, Richard Malik, Kennio Ferreira-Paim, Patricia Escandón, Jane E Sykes, Laura Rocío Castañón-Olivares, Cudberto Contreras-Peres, Blanca Samayoa, Tania C Sorrell, Elizabeth Castañeda, Shawn R Lockhart, David M Engelthaler, and Wieland Meyer PLoS neglected tropical diseases 2016 Aug (8) e0004861 |
| An integrated genomic and transcriptomic survey of mucormycosis-causing fungi. Marcus C Chibucos, Sameh Soliman, Teclegiorgis Gebremariam, Hongkyu Lee, Sean Daugherty, Joshua Orvis, Amol C Shetty, Jonathan Crabtree, Tracy H Hazen, Kizee A Etienne, Priti Kumari, Timothy D O'Connor, David A Rasko, Scott G Filler, Claire M Fraser, Shawn R Lockhart, Christopher D Skory, Ashraf S Ibrahim, and Vincent M Bruno Nature communications 2016 12218 |
| Whole-Genome Analysis of Cryptococcus gattii, Southeastern United States. Shawn R Lockhart, Chandler C Roe, and David M Engelthaler Emerging infectious diseases 2016 Jun 22(6) 1098-101 |
| Prevalent mutator genotype identified in fungal pathogen Candida glabrata promotes multi-drug resistance. Kelley R Healey, Yanan Zhao, Winder B Perez, Shawn R Lockhart, Jack D Sobel, Dimitrios Farmakiotis, Dimitrios P Kontoyiannis, Dominique Sanglard, Saad J Taj-Aldeen, Barbara D Alexander, Cristina Jimenez-Ortigosa, Erika Shor, and David S Perlin Nature communications 2016 11128 |
| Development of a Multi-Locus Sequence Typing System for Medically Relevant Bipolaris Species. Cau D Pham, Anne E Purfield, Robert Fader, Neil Pascoe, and Shawn R Lockhart J. Clin. Microbiol. 2015 Jul 22. |
- Page last reviewed:Oct 1, 2020
- Page last updated:Feb 24, 2021
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