CDC-Authored Genomics and Precision Health Publications Database
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Last data update: Oct 10, 2019. (Total: 2661 publications since 2011)
| Query Trace: all>>Shawn R Lockhart[CDC Author] |
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| Identification of Candida auris using the updated 8.01 VITEK®2 yeast identification system: a multi-laboratory evaluation study. Georges Ambaraghassi, Philippe J Dufresne, Simon F Dufresne, Émilie Vallières, José F Muñoz, Christina A Cuomo, Elizabeth L Berkow, Shawn R Lockhart, and Me-Linh Luong Journal of clinical microbiology 2019 Aug |
| Molecular typing of clinical and environmental isolates of Cryptococcus gattii species complex from Southern California, United States. Steven Hurst, Colleen Lysen, Gail Cooksey, Duc J Vugia, Anastasia P Litvintseva, and Shawn R Lockhart Mycoses 2019 Aug |
| On the Origins of a Species: What Might Explain the Rise of Candida auris ? Brendan R Jackson, Nancy Chow, Kaitlin Forsberg, Anastasia P Litvintseva, Shawn R Lockhart, Rory Welsh, Snigdha Vallabhaneni, and Tom Chiller Journal of fungi (Basel, Switzerland) 2019 Jul (3) |
| Candida auris : An Emerging Yeast Pathogen Posing Distinct Challenges for Laboratory Diagnostics, Treatment, and Infection Prevention. D Jane Hata, Romney Humphries, Shawn R Lockhart, and Archives of pathology & laboratory medicine 2019 Jun |
| GENOTYPES AND POPULATION GENETICS OF CRYPTOCOCCUS NEOFORMANS AND CRYPTOCOCCUS GATTII SPECIES COMPLEXES IN EUROPE AND THE MEDITERRANEAN AREA. Massimo Cogliati, Marie Desnos-Ollivier, Ilka McCormick-Smith, Volker Rickerts, Kennio Ferreira-Paim, Wieland Meyer, Teun Boekhout, Ferry Hagen, Bart Theelen, Joäo Inácio, Beatriz Alonso, Maria F Colom, Luciana Trilles, Maria Teresa Montagna, Antonella De Donno, Serdar Susever, Cagri Ergin, Aristea Velegraki, Mohamed S Ellabib, Simona Nardoni, Cristina Macci, Laura Trovato, Ludovico Dipineto, Sevim Akcaglar, Emilija Mlinaric-Missoni, Sebastien Bertout, Ana C F Vencá, Ana C Sampaio, Giuseppe Criseo, Stéphane Ranque, Nilgün Çerikçioglu, Anna Marchese, Luigi Vezzulli, Macit Ilkit, Vincenzo Pasquale, Itzhack Polacheck, and Shawn R Lockhart Fungal genetics and biology : FG & B 2019 Apr |
| A high-throughput and rapid method for accurate identification of emerging multidrug-resistant Candida auris. Ausaf Ahmad, Jonathan E Spencer, Shawn R Lockhart, Sabrina Singleton, David J Petway, Dennis A Bagarozzi, and Owen T Herzegh Mycoses 2019 Jun (6) 513-518 |
| Timing the Origin of Cryptococcus gattii sensu stricto, Southeastern United States. Shawn R Lockhart, Chandler C Roe, and David M Engelthaler Emerging infectious diseases 2018 Nov 24(11) 2095-2097 |
| Multiple introductions and subsequent transmission of multidrug-resistant Candida auris in the USA: a molecular epidemiological survey. Nancy A Chow, Lalitha Gade, Sharon V Tsay, Kaitlin Forsberg, Jane A Greenko, Karen L Southwick, Patricia M Barrett, Janna L Kerins, Shawn R Lockhart, Tom M Chiller, Anastasia P Litvintseva, and The Lancet. Infectious diseases 2018 Oct |
| Multidrug-Resistant Aspergillus fumigatus Carrying Mutations Linked to Environmental Fungicide Exposure - Three States, 2010-2017. Karlyn D Beer, Eileen C Farnon, Seema Jain, Carol Jamerson, Sarah Lineberger, Jeffrey Miller, Elizabeth L Berkow, Shawn R Lockhart, Tom Chiller, and Brendan R Jackson MMWR. Morbidity and mortality weekly report 2018 Sep (38) 1064-1067 |
| Molecular epidemiology of Candida auris in Colombia reveals a highly-related, country-wide colonization with regional patterns in Amphotericin B resistance. Patricia Escandón, Nancy A Chow, Diego H Caceres, Lalitha Gade, Elizabeth L Berkow, Paige Armstrong, Sandra Rivera, Elizabeth Misas, Carolina Duarte, Heather Moulton-Meissner, Rory M Welsh, Claudia Parra, Luz Angela Pescador, Nohora Villalobos, Soraya Salcedo, Indira Berrio, Carmen Varón, Andrés Espinosa-Bode, Shawn R Lockhart, Brendan R Jackson, Anastasia P Litvintseva, Mauricio Beltran, and Tom M Chiller Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2018 May |
| Notes from the Field: Surveillance for Candida auris - Colombia, September 2016-May 2017. Patricia Escandón, Diego H Cáceres, Andres Espinosa-Bode, Sandra Rivera, Paige Armstrong, Snigdha Vallabhaneni, Elizabeth L Berkow, Shawn R Lockhart, Tom Chiller, Brendan R Jackson, and Carolina Duarte MMWR. Morbidity and mortality weekly report 2018 Apr (15) 459-460 |
| Dating the Cryptococcus gattii Dispersal to the North American Pacific Northwest. Chandler C Roe, Jolene Bowers, Hanna Oltean, Emilio DeBess, Philippe J Dufresne, Scott McBurney, David P Overy, Bodo Wanke, Colleen Lysen, Tom Chiller, Wieland Meyer, George R Thompson, Shawn R Lockhart, Crystal M Hepp, and David M Engelthaler mSphere (1) |
| Molecular characterization of Cryptococcus neoformans and Cryptococcus gattii from environmental sources and genetic comparison with clinical isolates in Apulia, Italy. Maria Teresa Montagna, Antonella De Donno, Giuseppina Caggiano, Francesca Serio, Osvalda De Giglio, Francesco Bagordo, R D'Amicis, Shawn R Lockhart, and Massimo Cogliati Environmental research 2018 Jan 347-352 |
| Thinking beyond the Common Candida Species: Need for Species-Level Identification of Candida Due to the Emergence of Multidrug-Resistant Candida auris. Shawn R Lockhart, Brendan R Jackson, Snigdha Vallabhaneni, Luis Ostrosky-Zeichner, Peter G Pappas, and Tom Chiller Journal of clinical microbiology 2017 Dec (12) 3324-3327 |
| Rapid and accurate molecular identification of the emerging multidrug resistant pathogen Candida auris. Milena Kordalewska, Yanan Zhao, Shawn R Lockhart, Anuradha Chowdhary, Indira Berrio, and David S Perlin Journal of clinical microbiology 2017 May |
| Notes from the Field: Ongoing Transmission of Candida auris in Health Care Facilities - United States, June 2016-May 2017. Sharon Tsay, Rory M Welsh, Eleanor H Adams, Nancy A Chow, Lalitha Gade, Elizabeth L Berkow, Eugenie Poirot, Emily Lutterloh, Monica Quinn, Sudha Chaturvedi, Janna Kerins, Stephanie R Black, Sarah K Kemble, Patricia M Barrett, , Kerri Barton, D J Shannon, Kristy Bradley, Shawn R Lockhart, Anastasia P Litvintseva, Heather Moulton-Meissner, Alicia Shugart, Alex Kallen, Snigdha Vallabhaneni, Tom M Chiller, and Brendan R Jackson MMWR. Morbidity and mortality weekly report 2017 May (19) 514-515 |
| Detection of neonatal unit clusters of Candida parapsilosis fungaemia by microsatellite genotyping: Results from laboratory-based sentinel surveillance, South Africa, 2009-2010. Rindidzani E Magobo, Serisha D Naicker, Jeannette Wadula, Maphoshane Nchabeleng, Yacoob Coovadia, Anwar Hoosen, Shawn R Lockhart, Nelesh P Govender, and Mycoses 2017 Jan |
| Simultaneous Emergence of Multidrug-Resistant Candida auris on 3 Continents Confirmed by Whole-Genome Sequencing and Epidemiological Analyses. Shawn R Lockhart, Kizee A Etienne, Snigdha Vallabhaneni, Joveria Farooqi, Anuradha Chowdhary, Nelesh P Govender, Arnaldo Lopes Colombo, Belinda Calvo, Christina A Cuomo, Christopher A Desjardins, Elizabeth L Berkow, Mariana Castanheira, Rindidzani E Magobo, Kauser Jabeen, Rana J Asghar, Jacques F Meis, Brendan Jackson, Tom Chiller, and Anastasia P Litvintseva Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 Jan 64(2) 134-140 |
| Investigation of the First Seven Reported Cases of Candida auris, a Globally Emerging Invasive, Multidrug-Resistant Fungus - United States, May 2013-August 2016. Snigdha Vallabhaneni, Alex Kallen, Sharon Tsay, Nancy Chow, Rory Welsh, Janna Kerins, Sarah K Kemble, Massimo Pacilli, Stephanie R Black, Emily Landon, Jessica Ridgway, Tara N Palmore, Adrian Zelzany, Eleanor H Adams, Monica Quinn, Sudha Chaturvedi, Jane Greenko, Rafael Fernandez, Karen Southwick, E Yoko Furuya, David P Calfee, Camille Hamula, Gopi Patel, Patricia Barrett, , Patricia Lafaro, Elizabeth L Berkow, Heather Moulton-Meissner, Judith Noble-Wang, Ryan P Fagan, Brendan R Jackson, Shawn R Lockhart, Anastasia P Litvintseva, and Tom M Chiller MMWR. Morbidity and mortality weekly report 2016 Nov (44) 1234-1237 |
| Detection of mucormycetes and other pathogenic fungi in formalin fixed paraffin embedded and fresh tissues using the extended region of 28S rDNA. Lalitha Gade, Steven Hurst, S Arunmozhi Balajee, Shawn R Lockhart, and Anastasia P Litvintseva Medical mycology 2016 Sep |
| Population Genetic Analysis Reveals a High Genetic Diversity in the Brazilian Cryptococcus gattii VGII Population and Shifts the Global Origin from the Amazon Rainforest to the Semi-arid Desert in the Northeast of Brazil. Ana C P Souto, Lucas X Bonfietti, Kennio Ferreira-Paim, Luciana Trilles, Marilena Martins, Marcelo Ribeiro-Alves, Cau D Pham, Liline Martins, Wallace Dos Santos, Marilene Chang, Fabio Brito-Santos, Dayane C S Santos, Silvana Fortes, Shawn R Lockhart, Bodo Wanke, Márcia S C Melhem, Márcia S Lazéra, and Wieland Meyer PLoS neglected tropical diseases 2016 Aug (8) e0004885 |
| MLST and Whole-Genome-Based Population Analysis of Cryptococcus gattii VGIII Links Clinical, Veterinary and Environmental Strains, and Reveals Divergent Serotype Specific Sub-populations and Distant Ancestors. Carolina Firacative, Chandler C Roe, Richard Malik, Kennio Ferreira-Paim, Patricia Escandón, Jane E Sykes, Laura Rocío Castañón-Olivares, Cudberto Contreras-Peres, Blanca Samayoa, Tania C Sorrell, Elizabeth Castañeda, Shawn R Lockhart, David M Engelthaler, and Wieland Meyer PLoS neglected tropical diseases 2016 Aug (8) e0004861 |
| An integrated genomic and transcriptomic survey of mucormycosis-causing fungi. Marcus C Chibucos, Sameh Soliman, Teclegiorgis Gebremariam, Hongkyu Lee, Sean Daugherty, Joshua Orvis, Amol C Shetty, Jonathan Crabtree, Tracy H Hazen, Kizee A Etienne, Priti Kumari, Timothy D O'Connor, David A Rasko, Scott G Filler, Claire M Fraser, Shawn R Lockhart, Christopher D Skory, Ashraf S Ibrahim, and Vincent M Bruno Nature communications 2016 12218 |
| Whole-Genome Analysis of Cryptococcus gattii, Southeastern United States. Shawn R Lockhart, Chandler C Roe, and David M Engelthaler Emerging infectious diseases 2016 Jun 22(6) 1098-101 |
| Prevalent mutator genotype identified in fungal pathogen Candida glabrata promotes multi-drug resistance. Kelley R Healey, Yanan Zhao, Winder B Perez, Shawn R Lockhart, Jack D Sobel, Dimitrios Farmakiotis, Dimitrios P Kontoyiannis, Dominique Sanglard, Saad J Taj-Aldeen, Barbara D Alexander, Cristina Jimenez-Ortigosa, Erika Shor, and David S Perlin Nature communications 2016 11128 |
| Development of a Multi-Locus Sequence Typing System for Medically Relevant Bipolaris Species. Cau D Pham, Anne E Purfield, Robert Fader, Neil Pascoe, and Shawn R Lockhart J. Clin. Microbiol. 2015 Jul 22. |
| Investigating fungal outbreaks in the 21st century. Anastasia P Litvintseva, Mary E Brandt, Rajal K Mody, and Shawn R Lockhart PLoS pathogens 2015 May (5) e1004804 |
| The genome sequence of four isolates from the family Lichtheimiaceae. Marcus C Chibucos, Kizee A Etienne, Joshua Orvis, Hongkyu Lee, Sean Daugherty, Shawn R Lockhart, Ashraf S Ibrahim, and Vincent M Bruno Pathog Dis 2015 Jul 73(5) |
| Molecular mechanisms of fluconazole resistance in Candida parapsilosis isolates from a U.S. surveillance system. Nina T Grossman, Cau D Pham, Angela A Cleveland, and Shawn R Lockhart Antimicrob. Agents Chemother. 2015 Feb 59(2) 1030-7 |
| Cryptococcus gattii in North American Pacific Northwest: whole-population genome analysis provides insights into species evolution and dispersal. David M Engelthaler, Nathan D Hicks, John D Gillece, Chandler C Roe, James M Schupp, Elizabeth M Driebe, Felix Gilgado, Fabian Carriconde, Luciana Trilles, Carolina Firacative, Popchai Ngamskulrungroj, Elizabeth Castañeda, Marcia dos Santos Lazera, Marcia S C Melhem, Asa Pérez-Bercoff, Gavin Huttley, Tania C Sorrell, Kerstin Voelz, Robin C May, Matthew C Fisher, George R Thompson, Shawn R Lockhart, Paul Keim, and Wieland Meyer MBio 2014 5(4) e01464-14 |
| Whole-genome analysis of Exserohilum rostratum from an outbreak of fungal meningitis and other infections. Anastasia P Litvintseva, Steven Hurst, Lalitha Gade, Michael A Frace, Remy Hilsabeck, James M Schupp, John D Gillece, Chandler Roe, David Smith, Paul Keim, Shawn R Lockhart, Shankar Changayil, M Ryan Weil, Duncan R MacCannell, Mary E Brandt, and David M Engelthaler J. Clin. Microbiol. 2014 Sep 52(9) 3216-22 |
| Draft Genome Sequence of Mortierella alpina Isolate CDC-B6842. Kizee A Etienne, Marcus C Chibucos, Qi Su, Joshua Orvis, Sean Daugherty, Sandra Ott, Naomi A Sengamalay, Claire M Fraser, Shawn R Lockhart, and Vincent M Bruno Genome Announc 2014 2(1) |
| Whole genome sequence typing to investigate the Apophysomyces outbreak following a tornado in Joplin, Missouri, 2011. Kizee A Etienne, John Gillece, Remy Hilsabeck, Jim M Schupp, Rebecca Colman, Shawn R Lockhart, Lalitha Gade, Elizabeth H Thompson, Deanna A Sutton, Robyn Neblett-Fanfair, Benjamin J Park, George Turabelidze, Paul Keim, Mary E Brandt, Eszter Deak, and David M Engelthaler PLoS ONE 2012 7(11) e49989 |
| Genotyping of Candida parapsilosis from three neonatal intensive care units (NICUs) using a panel of five multilocus microsatellite markers: broad genetic diversity and a cluster of related strains in one NICU. Errol Reiss, Brent A Lasker, Timothy J Lott, Catherine M Bendel, David A Kaufman, Kevin C Hazen, Kelly C Wade, Karin L McGowan, and Shawn R Lockhart Infect. Genet. Evol. 2012 Dec 12(8) 1654-60 |
| Azole resistance in Aspergillus fumigatus isolates from the ARTEMIS global surveillance study is primarily due to the TR/L98H mutation in the cyp51A gene. Shawn R Lockhart, João P Frade, Kizee A Etienne, Michael A Pfaller, Daniel J Diekema, and S Arunmozhi Balajee Antimicrob. Agents Chemother. 2011 Sep 55(9) 4465-8 |
- Page last reviewed:Jul 30, 2019
- Page last updated:Oct 10, 2019
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