CDC-Authored Genomics and Precision Health Publications Database
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Last data update: Dec 5, 2019. (Total: 2717 publications since 2011)
| Query Trace: all>>Lee S Katz[CDC Author] |
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| Genome wide characterization of enterotoxigenic Escherichia coli serogroup O6 isolates from multiple outbreaks and sporadic infections from 1975-2016. Vaishnavi Pattabiraman, Lee S Katz, Jessica C Chen, Andre E McCullough, and Eija Trees PloS one 2018 13(12) e0208735 |
| Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance. Ruth E Timme, Hugh Rand, Martin Shumway, Eija K Trees, Mustafa Simmons, Richa Agarwala, Steven Davis, Glenn E Tillman, Stephanie Defibaugh-Chavez, Heather A Carleton, William A Klimke, and Lee S Katz PeerJ 2017 e3893 |
| Comparison of classical multi-locus sequence typing software for next-generation sequencing data. Andrew J Page, Nabil-Fareed Alikhan, Heather A Carleton, Torsten Seemann, Jacqueline A Keane, and Lee S Katz Microbial genomics 2017 Aug (8) e000124 |
| SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology. Aaron Petkau, Philip Mabon, Cameron Sieffert, Natalie C Knox, Jennifer Cabral, Mariam Iskander, Mark Iskander, Kelly Weedmark, Rahat Zaheer, Lee S Katz, Celine Nadon, Aleisha Reimer, Eduardo Taboada, Robert G Beiko, William Hsiao, Fiona Brinkman, Morag Graham, and Gary Van Domselaar Microbial genomics 2017 Jun (6) e000116 |
| Whole genome and core genome multilocus sequence typing and single nucleotide polymorphism analyses of Listeria monocytogenes associated with an outbreak linked to cheese, United States, 2013. Yi Chen, Yan Luo, Heather Carleton, Ruth Timme, David Melka, Tim Muruvanda, Charles Wang, George Kastanis, Lee S Katz, Lauren Turner, Angela Fritzinger, Terence Moore, Robert Stones, Joseph Blankenship, Monique Salter, Mickey Parish, Thomas S Hammack, Peter S Evans, Cheryl L Tarr, Marc W Allard, Errol A Strain, and Eric W Brown Applied and environmental microbiology 2017 May |
| A Comparative Analysis of the Lyve-SET Phylogenomics Pipeline for Genomic Epidemiology of Foodborne Pathogens. Lee S Katz, Taylor Griswold, Amanda J Williams-Newkirk, Darlene Wagner, Aaron Petkau, Cameron Sieffert, Gary Van Domselaar, Xiangyu Deng, and Heather A Carleton Frontiers in microbiology 2017 375 |
| Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes. Alexandra Moura, Alexis Criscuolo, Hannes Pouseele, Mylène M Maury, Alexandre Leclercq, Cheryl Tarr, Jonas T Björkman, Timothy Dallman, Aleisha Reimer, Vincent Enouf, Elise Larsonneur, Heather Carleton, Hélène Bracq-Dieye, Lee S Katz, Louis Jones, Marie Touchon, Mathieu Tourdjman, Matthew Walker, Steven Stroika, Thomas Cantinelli, Viviane Chenal-Francisque, Zuzana Kucerova, Eduardo P C Rocha, Celine Nadon, Kathie Grant, Eva M Nielsen, Bruno Pot, Peter Gerner-Smidt, Marc Lecuit, and Sylvain Brisse Nature microbiology 2016 Oct 16185 |
| Implementation of Nationwide Real-time Whole-genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation. Brendan R Jackson, Cheryl Tarr, Errol Strain, Kelly A Jackson, Amanda Conrad, Heather Carleton, Lee S Katz, Steven Stroika, L Hannah Gould, Rajal K Mody, Benjamin J Silk, Jennifer Beal, Yi Chen, Ruth Timme, Matthew Doyle, Angela Fields, Matthew Wise, Glenn Tillman, Stephanie Defibaugh-Chavez, Zuzana Kucerova, Ashley Sabol, Katie Roache, Eija Trees, Mustafa Simmons, Jamie Wasilenko, Kristy Kubota, Hannes Pouseele, William Klimke, John Besser, Eric Brown, Marc Allard, and Peter Gerner-Smidt Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 63(3) 380-6 |
| Evolutionary Relationships of Outbreak-associated Listeria monocytogenes Strains of Serotypes 1/2a and 1/2b Determined by Whole Genome Sequencing. Teresa M Bergholz, Henk C den Bakker, Lee S Katz, Benjamin J Silk, Kelly A Jackson, Zuzana Kucerova, Lavin A Joseph, Maryann Turnsek, Lori M Gladney, Jessica L Halpin, Karen Xavier, Joseph Gossack, Todd J Ward, Michael Frace, and Cheryl L Tarr Applied and environmental microbiology 2015 Nov |
| Phylodynamic analysis of clinical and environmental Vibrio cholerae isolates from Haiti reveals diversification driven by positive selection. Taj Azarian, Afsar Ali, Judith A Johnson, David Mohr, Mattia Prosperi, Nazle M Veras, Mohammed Jubair, Samantha L Strickland, Mohammad H Rashid, Meer T Alam, Thomas A Weppelmann, Lee S Katz, Cheryl L Tarr, Rita R Colwell, J Glenn Morris, and Marco Salemi MBio 2014 5(6) |
| Genome Sequences of Vibrio navarrensis, a Potential Human Pathogen. Lori M Gladney, Lee S Katz, Kristen M Knipe, Lori A Rowe, Andrew B Conley, Lavanya Rishishwar, Leonardo Mariño-Ramírez, I King Jordan, and Cheryl L Tarr Genome Announc 2014 2(6) |
| Environmental surveillance for toxigenic Vibrio cholerae in surface waters of Haiti. Amy M Kahler, Bradd J Haley, Arlene Chen, Bonnie J Mull, Cheryl L Tarr, Maryann Turnsek, Lee S Katz, Michael S Humphrys, Gordana Derado, Nicole Freeman, Jacques Boncy, Rita R Colwell, Anwar Huq, and Vincent R Hill Am. J. Trop. Med. Hyg. 2015 Jan 92(1) 118-25 |
| Draft Genome Sequence of Environmental Vibrio cholerae 2012EL-1759 with Similarities to the V. cholerae O1 Classical Biotype. Lee S Katz, Maryann Turnsek, Amy Kahler, Vincent R Hill, E Fidelma Boyd, and Cheryl L Tarr Genome Announc 2014 2(4) |
| Genomic basis of a polyagglutinating isolate of Neisseria meningitidis. Lavanya Rishishwar, Lee S Katz, Nitya V Sharma, Lori Rowe, Michael Frace, Jennifer Dolan Thomas, Brian H Harcourt, Leonard W Mayer, and I King Jordan J. Bacteriol. 2012 Oct 194(20) 5649-56 |
| Genome sequences for six Rhodanobacter strains, isolated from soils and the terrestrial subsurface, with variable denitrification capabilities. Joel E Kostka, Stefan J Green, Lavanya Rishishwar, Om Prakash, Lee S Katz, Leonardo Mariño-Ramírez, I King Jordan, Christine Munk, Natalia Ivanova, Natalia Mikhailova, David B Watson, Steven D Brown, Anthony V Palumbo, and Scott C Brooks J. Bacteriol. 2012 Aug 194(16) 4461-2 |
| Evaluation of new biomarker genes for differentiating Haemophilus influenzae from Haemophilus haemolyticus. M Jordan Theodore, Raydel D Anderson, Xin Wang, Lee S Katz, Jeni T Vuong, Melissa E Bell, Billie A Juni, Sara A Lowther, Ruth Lynfield, Jessica R MacNeil, and Leonard W Mayer J. Clin. Microbiol. 2012 Apr 50(4) 1422-4 |
| Genome sequences for five strains of the emerging pathogen Haemophilus haemolyticus. I King Jordan, Andrew B Conley, Ivan V Antonov, Robert A Arthur, Erin D Cook, Guy P Cooper, Bernard L Jones, Kristen M Knipe, Kevin J Lee, Xing Liu, Gabriel J Mitchell, Pushkar R Pande, Robert A Petit, Shaopu Qin, Vani N Rajan, Shruti Sarda, Aswathy Sebastian, Shiyuyun Tang, Racchit Thapliyal, Neha J Varghese, Tianjun Ye, Lee S Katz, Xin Wang, Lori Rowe, Michael Frace, and Leonard W Mayer J. Bacteriol. 2011 Oct 193(20) 5879-80 |
| Using single-nucleotide polymorphisms to discriminate disease-associated from carried genomes of Neisseria meningitidis. Lee S Katz, Nitya V Sharma, Brian H Harcourt, Jennifer Dolan Thomas, Xin Wang, Leonard W Mayer, and I King Jordan J. Bacteriol. 2011 Jul 193(14) 3633-41 |
- Page last reviewed:Jul 30, 2019
- Page last updated:Dec 5, 2019
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