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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Sep 27, 2022. (Total: 4031 publications since 2011)
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Records 1-22 (of 22 Records)
Query Trace: all>>Lee S Katz[CDC Author]
Benchmark datasets for SARS-CoV-2 surveillance bioinformatics.
Lingzi Xiaoli, Jill V Hagey, Daniel J Park, Christopher A Gulvik, Erin L Young, Nabil-Fareed Alikhan, Adrian Lawsin, Norman Hassell, Kristen Knipe, Kelly F Oakeson, Adam C Retchless, Migun Shakya, Chien-Chi Lo, Patrick Chain, Andrew J Page, Benjamin J Metcalf, Michelle Su, Jessica Rowell, Eshaw Vidyaprakash, Clinton R Paden, Andrew D Huang, Dawn Roellig, Ketan Patel, Kathryn Winglee, Michael R Weigand, and Lee S Katz
PeerJ 2022 10e13821
Molecular characterization of circulating Salmonella Typhi strains in an urban informal settlement in Kenya.
Caroline Ochieng, Jessica C Chen, Mike Powel Osita, Lee S Katz, Taylor Griswold, Victor Omballa, Eric Ng'eno, Alice Ouma, Newton Wamola, Christine Opiyo, Loicer Achieng, Patrick K Munywoki, Rene S Hendriksen, Molly Freeman, Matthew Mikoleit, Bonventure Juma, Godfrey Bigogo, Eric Mintz, Jennifer R Verani, Elizabeth Hunsperger, and Heather A Carleton
PLoS neglected tropical diseases 2022 16(8) e0010704
Software testing in microbial bioinformatics: a call to action.
Boas C L van der Putten, C I Mendes, Brooke M Talbot, Jolinda de Korne-Elenbaas, Rafael Mamede, Pedro Vila-Cerqueira, Luis Pedro Coelho, Christopher A Gulvik, Lee S Katz, and The Asm Ngs Hackathon Participants
Microbial genomics 2022 8(3)
The Use of Whole-Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States.
Eric L Stevens, Heather A Carleton, Jennifer Beal, Glenn E Tillman, Rebecca L Lindsey, A C Lauer, Arthur Pightling, Karen G Jarvis, Andrea Ottesen, Padmini Ramachandran, Leslie Hintz, Lee S Katz, Jason P Folster, Jean M Whichard, Eija Trees, Ruth E Timme, Patrick McDermott, Beverly Wolpert, Michael Bazaco, Shaohua Zhao, Sabina Lindley, Beau B Bruce, Patricia M Griffin, Eric Brown, Marc Allard, Sandra Tallent, Kari Irvin, Maria Hoffmann, Matt Wise, Robert Tauxe, Peter Gerner-Smidt, Mustafa Simmons, Bonnie Kissler, Stephanie Defibaugh-Chavez, William Klimke, Richa Agarwala, James Lindsay, Kimberly Cook, Suelee Robbe Austerman, David Goldman, Sherri McGarry, Kis Robertson Hale, Uday Dessai, Steven M Musser, and Chris Braden
Journal of food protection 2022
Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package.
Emma J Griffiths, Ruth E Timme, Catarina Inês Mendes, Andrew J Page, Nabil-Fareed Alikhan, Dan Fornika, Finlay Maguire, Josefina Campos, Daniel Park, Idowu B Olawoye, Paul E Oluniyi, Dominique Anderson, Alan Christoffels, Anders Gonçalves da Silva, Rhiannon Cameron, Damion Dooley, Lee S Katz, Allison Black, Ilene Karsch-Mizrachi, Tanya Barrett, Anjanette Johnston, Thomas R Connor, Samuel M Nicholls, Adam A Witney, Gregory H Tyson, Simon H Tausch, Amogelang R Raphenya, Brian Alcock, David M Aanensen, Emma Hodcroft, William W L Hsiao, Ana Tereza R Vasconcelos, and Duncan R MacCannell
GigaScience 2022 11
Clinical and Laboratory Findings in Patients with Potential SARS-CoV-2 Reinfection, May-July 2020.
James T Lee, Elisabeth M Hesse, Heather N Paulin, Deblina Datta, Lee S Katz, Amish Talwar, Gregory Chang, Romeo R Galang, Jennifer L Harcourt, Azaibi Tamin, Natalie J Thornburg, Karen K Wong, Valerie Stevens, Kaylee Kim, Suxiang Tong, Bin Zhou, Krista Queen, Jan Drobeniuc, Jennifer M Folster, D Joseph Sexton, Sumathi Ramachandran, Hannah Browne, John Iskander, and Kiren Mitruka
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2021 2
Implications of Mobile Genetic Elements for Salmonella enterica Single-Nucleotide Polymorphism Subtyping and Source Tracking Investigations.
Shaoting Li, Shaokang Zhang, Leen Baert, Balamurugan Jagadeesan, Catherine Ngom-Bru, Taylor Griswold, Lee S Katz, Heather A Carleton, and Xiangyu Deng
Applied and environmental microbiology 2019 Dec 85(24)
Implementation of Nationwide Real-time Whole-genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation.
Brendan R Jackson, Cheryl Tarr, Errol Strain, Kelly A Jackson, Amanda Conrad, Heather Carleton, Lee S Katz, Steven Stroika, L Hannah Gould, Rajal K Mody, Benjamin J Silk, Jennifer Beal, Yi Chen, Ruth Timme, Matthew Doyle, Angela Fields, Matthew Wise, Glenn Tillman, Stephanie Defibaugh-Chavez, Zuzana Kucerova, Ashley Sabol, Katie Roache, Eija Trees, Mustafa Simmons, Jamie Wasilenko, Kristy Kubota, Hannes Pouseele, William Klimke, John Besser, Eric Brown, Marc Allard, and Peter Gerner-Smidt
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 63(3) 380-6
Genome wide characterization of enterotoxigenic Escherichia coli serogroup O6 isolates from multiple outbreaks and sporadic infections from 1975-2016.
Vaishnavi Pattabiraman, Lee S Katz, Jessica C Chen, Andre E McCullough, and Eija Trees
PloS one 2018 13(12) e0208735
SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology.
Aaron Petkau, Philip Mabon, Cameron Sieffert, Natalie C Knox, Jennifer Cabral, Mariam Iskander, Mark Iskander, Kelly Weedmark, Rahat Zaheer, Lee S Katz, Celine Nadon, Aleisha Reimer, Eduardo Taboada, Robert G Beiko, William Hsiao, Fiona Brinkman, Morag Graham, and Gary Van Domselaar
Microbial genomics 2017 Jun (6) e000116
Whole genome and core genome multilocus sequence typing and single nucleotide polymorphism analyses of Listeria monocytogenes associated with an outbreak linked to cheese, United States, 2013.
Yi Chen, Yan Luo, Heather Carleton, Ruth Timme, David Melka, Tim Muruvanda, Charles Wang, George Kastanis, Lee S Katz, Lauren Turner, Angela Fritzinger, Terence Moore, Robert Stones, Joseph Blankenship, Monique Salter, Mickey Parish, Thomas S Hammack, Peter S Evans, Cheryl L Tarr, Marc W Allard, Errol A Strain, and Eric W Brown
Applied and environmental microbiology 2017 May
Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes.
Alexandra Moura, Alexis Criscuolo, Hannes Pouseele, Mylène M Maury, Alexandre Leclercq, Cheryl Tarr, Jonas T Björkman, Timothy Dallman, Aleisha Reimer, Vincent Enouf, Elise Larsonneur, Heather Carleton, Hélène Bracq-Dieye, Lee S Katz, Louis Jones, Marie Touchon, Mathieu Tourdjman, Matthew Walker, Steven Stroika, Thomas Cantinelli, Viviane Chenal-Francisque, Zuzana Kucerova, Eduardo P C Rocha, Celine Nadon, Kathie Grant, Eva M Nielsen, Bruno Pot, Peter Gerner-Smidt, Marc Lecuit, and Sylvain Brisse
Nature microbiology 2016 Oct 16185
Evolutionary Relationships of Outbreak-associated Listeria monocytogenes Strains of Serotypes 1/2a and 1/2b Determined by Whole Genome Sequencing.
Teresa M Bergholz, Henk C den Bakker, Lee S Katz, Benjamin J Silk, Kelly A Jackson, Zuzana Kucerova, Lavin A Joseph, Maryann Turnsek, Lori M Gladney, Jessica L Halpin, Karen Xavier, Joseph Gossack, Todd J Ward, Michael Frace, and Cheryl L Tarr
Applied and environmental microbiology 2015 Nov
Draft Genome Sequence of Environmental Vibrio cholerae 2012EL-1759 with Similarities to the V. cholerae O1 Classical Biotype.
Lee S Katz, Maryann Turnsek, Amy Kahler, Vincent R Hill, E Fidelma Boyd, and Cheryl L Tarr
Genome Announc 2014 2(4)
Environmental surveillance for toxigenic Vibrio cholerae in surface waters of Haiti.
Amy M Kahler, Bradd J Haley, Arlene Chen, Bonnie J Mull, Cheryl L Tarr, Maryann Turnsek, Lee S Katz, Michael S Humphrys, Gordana Derado, Nicole Freeman, Jacques Boncy, Rita R Colwell, Anwar Huq, and Vincent R Hill
Am. J. Trop. Med. Hyg. 2015 Jan 92(1) 118-25
Genome Sequences of Vibrio navarrensis, a Potential Human Pathogen.
Lori M Gladney, Lee S Katz, Kristen M Knipe, Lori A Rowe, Andrew B Conley, Lavanya Rishishwar, Leonardo Mariño-Ramírez, I King Jordan, and Cheryl L Tarr
Genome Announc 2014 2(6)
Phylodynamic analysis of clinical and environmental Vibrio cholerae isolates from Haiti reveals diversification driven by positive selection.
Taj Azarian, Afsar Ali, Judith A Johnson, David Mohr, Mattia Prosperi, Nazle M Veras, Mohammed Jubair, Samantha L Strickland, Mohammad H Rashid, Meer T Alam, Thomas A Weppelmann, Lee S Katz, Cheryl L Tarr, Rita R Colwell, J Glenn Morris, and Marco Salemi
MBio 2014 5(6)
Evaluation of new biomarker genes for differentiating Haemophilus influenzae from Haemophilus haemolyticus.
M Jordan Theodore, Raydel D Anderson, Xin Wang, Lee S Katz, Jeni T Vuong, Melissa E Bell, Billie A Juni, Sara A Lowther, Ruth Lynfield, Jessica R MacNeil, and Leonard W Mayer
J. Clin. Microbiol. 2012 Apr 50(4) 1422-4
Genomic basis of a polyagglutinating isolate of Neisseria meningitidis.
Lavanya Rishishwar, Lee S Katz, Nitya V Sharma, Lori Rowe, Michael Frace, Jennifer Dolan Thomas, Brian H Harcourt, Leonard W Mayer, and I King Jordan
J. Bacteriol. 2012 Oct 194(20) 5649-56
Genome sequences for six Rhodanobacter strains, isolated from soils and the terrestrial subsurface, with variable denitrification capabilities.
Joel E Kostka, Stefan J Green, Lavanya Rishishwar, Om Prakash, Lee S Katz, Leonardo Mariño-Ramírez, I King Jordan, Christine Munk, Natalia Ivanova, Natalia Mikhailova, David B Watson, Steven D Brown, Anthony V Palumbo, and Scott C Brooks
J. Bacteriol. 2012 Aug 194(16) 4461-2
Using single-nucleotide polymorphisms to discriminate disease-associated from carried genomes of Neisseria meningitidis.
Lee S Katz, Nitya V Sharma, Brian H Harcourt, Jennifer Dolan Thomas, Xin Wang, Leonard W Mayer, and I King Jordan
J. Bacteriol. 2011 Jul 193(14) 3633-41
Genome sequences for five strains of the emerging pathogen Haemophilus haemolyticus.
I King Jordan, Andrew B Conley, Ivan V Antonov, Robert A Arthur, Erin D Cook, Guy P Cooper, Bernard L Jones, Kristen M Knipe, Kevin J Lee, Xing Liu, Gabriel J Mitchell, Pushkar R Pande, Robert A Petit, Shaopu Qin, Vani N Rajan, Shruti Sarda, Aswathy Sebastian, Shiyuyun Tang, Racchit Thapliyal, Neha J Varghese, Tianjun Ye, Lee S Katz, Xin Wang, Lori Rowe, Michael Frace, and Leonard W Mayer
J. Bacteriol. 2011 Oct 193(20) 5879-80
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