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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Jun 02, 2023. (Total: 4311 publications since 2011)
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Records 1-25 (of 25 Records)
Query Trace: all>>Lee S Katz[CDC Author]
Cronobacter sakazakii Infections in Two Infants Linked to Powdered Infant Formula and Breast Pump Equipment - United States, 2021 and 2022.
Haston JC , Miko S , Cope JR , McKeel H , Walters C , Joseph LA , Griswold T , Katz LS , Andjar AA , Tourdot L , Rounds J , Vagnone P , Medus C , Harris J , Geist R , Neises D , Wiggington A , Smith T , Im MS , Wheeler C , Smith P , Carleton HA , Lee CC .
MMWR Morb Mortal Wkly Rep 2023 72 (9) 223-226
Genome Sequences from a Reemergence of Vibrio cholerae in Haiti, 2022 Reveal Relatedness to Previously Circulating Strains.
Walters C , Chen J , Stroika S , Katz LS , Turnsek M , Compre V , Im MS , Gomez S , McCullough A , Landaverde C , Putney J , Caidi H , Folster J , Carleton HA , Boncy J , Lee CC .
J Clin Microbiol 2023 e0014223
Genome Sequences of Hemolytic and Nonhemolytic Listeria innocua Strains from Human, Food, and Environmental Sources.
McIntosh T , Kucerova Z , Katz LS , Lilley CM , Rowe LA , Unoarumhi Y , Batra D , Burnett E , Smikle M , Lee C .
Microbiol Resour Announc 2022 11 (12) e0072322
Benchmark datasets for SARS-CoV-2 surveillance bioinformatics.
Xiaoli L , Hagey JV , Park DJ , Gulvik CA , Young EL , Alikhan NF , Lawsin A , Hassell N , Knipe K , Oakeson KF , Retchless AC , Shakya M , Lo CC , Chain P , Page AJ , Metcalf BJ , Su M , Rowell J , Vidyaprakash E , Paden CR , Huang AD , Roellig D , Patel K , Winglee K , Weigand MR , Katz LS .
PeerJ 2022 10 e13821 type
Molecular characterization of circulating Salmonella Typhi strains in an urban informal settlement in Kenya.
Ochieng C , Chen JC , Osita MP , Katz LS , Griswold T , Omballa V , Ng'eno E , Ouma A , Wamola N , Opiyo C , Achieng L , Munywoki PK , Hendriksen RS , Freeman M , Mikoleit M , Juma B , Bigogo G , Mintz E , Verani JR , Hunsperger E , Carleton HA .
PLoS Negl Trop Dis 2022 16 (8) e0010704
The Use of Whole-Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States.
Stevens EL , Carleton HA , Beal J , Tillman GE , Lindsey RL , Lauer AC , Pightling A , Jarvis KG , Ottesen A , Ramachandran P , Hintz L , Katz LS , Folster JP , Whichard JM , Trees E , Timme RE , McDermott P , Wolpert B , Bazaco M , Zhao S , Lindley S , Bruce BB , Griffin PM , Brown E , Allard M , Tallent S , Irvin K , Hoffmann M , Wise M , Tauxe R , Gerner-Smidt P , Simmons M , Kissler B , Defibaugh-Chavez S , Klimke W , Agarwala R , Lindsay J , Cook K , Austerman SR , Goldman D , McGarry S , Hale KR , Dessai U , Musser SM , Braden C .
J Food Prot 2022 85 (5) 755-772
Software testing in microbial bioinformatics: a call to action.
vanderPutten BCL , Mendes CI , Talbot BM , deKorne-Elenbaas J , Mamede R , Vila-Cerqueira P , Coelho LP , Gulvik CA , Katz LS , TheAsmNgsHackathon Participants .
Microb Genom 2022 8 (3)
Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package.
Griffiths EJ , Timme RE , Mendes CI , Page AJ , Alikhan NF , Fornika D , Maguire F , Campos J , Park D , Olawoye IB , Oluniyi PE , Anderson D , Christoffels A , daSilva AG , Cameron R , Dooley D , Katz LS , Black A , Karsch-Mizrachi I , Barrett T , Johnston A , Connor TR , Nicholls SM , Witney AA , Tyson GH , Tausch SH , Raphenya AR , Alcock B , Aanensen DM , Hodcroft E , Hsiao WWL , Vasconcelos ATR , MacCannell DR .
Gigascience 2022 11 type
Clinical and Laboratory Findings in Patients with Potential SARS-CoV-2 Reinfection, May-July 2020.
Lee JT , Hesse EM , Paulin HN , Datta D , Katz LS , Talwar A , Chang G , Galang RR , Harcourt JL , Tamin A , Thornburg NJ , Wong KK , Stevens V , Kim K , Tong S , Zhou B , Queen K , Drobeniuc J , Folster JM , Sexton DJ , Ramachandran S , Browne H , Iskander J , Mitruka K .
Clin Infect Dis 2021 73 (12) 2217-2225 type
Implications of Mobile Genetic Elements for Salmonella enterica Single-Nucleotide Polymorphism Subtyping and Source Tracking Investigations.
Li S , Zhang S , Baert L , Jagadeesan B , Ngom-Bru C , Griswold T , Katz LS , Carleton HA , Deng X .
Appl Environ Microbiol 2019 85 (24)
Genome wide characterization of enterotoxigenic Escherichia coli serogroup O6 isolates from multiple outbreaks and sporadic infections from 1975-2016.
Pattabiraman V , Katz LS , Chen JC , McCullough AE , Trees E .
PLoS One 2018 13 (12) e0208735
SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology.
Petkau Aaron, Mabon Philip, Sieffert Cameron, Knox Natalie C, Cabral Jennifer, Iskander Mariam, Iskander Mark, Weedmark Kelly, Zaheer Rahat, Katz Lee S, Nadon Celine, Reimer Aleisha, Taboada Eduardo, Beiko Robert G, Hsiao William, Brinkman Fiona, Graham Morag, Van Domselaar Gary.Microbial genomics 2017 Jun (6) e000116 .
Microbial genomics 2017 Jun (6) e000116
Whole genome and core genome multilocus sequence typing and single nucleotide polymorphism analyses of Listeria monocytogenes associated with an outbreak linked to cheese, United States, 2013.
Chen Yi, Luo Yan, Carleton Heather, Timme Ruth, Melka David, Muruvanda Tim, Wang Charles, Kastanis George, Katz Lee S, Turner Lauren, Fritzinger Angela, Moore Terence, Stones Robert, Blankenship Joseph, Salter Monique, Parish Mickey, Hammack Thomas S, Evans Peter S, Tarr Cheryl L, Allard Marc W, Strain Errol A, Brown Eric W.Applied and environmental microbiology 2017 May .
Applied and environmental microbiology 2017 May
Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes.
Moura Alexandra, Criscuolo Alexis, Pouseele Hannes, Maury Mylène M, Leclercq Alexandre, Tarr Cheryl, Björkman Jonas T, Dallman Timothy, Reimer Aleisha, Enouf Vincent, Larsonneur Elise, Carleton Heather, Bracq-Dieye Hélène, Katz Lee S, Jones Louis, Touchon Marie, Tourdjman Mathieu, Walker Matthew, Stroika Steven, Cantinelli Thomas, Chenal-Francisque Viviane, Kucerova Zuzana, Rocha Eduardo P C, Nadon Celine, Grant Kathie, Nielsen Eva M, Pot Bruno, Gerner-Smidt Peter, Lecuit Marc, Brisse Sylvain.Nature microbiology 2016 Oct 16185 .
Nature microbiology 2016 Oct 16185
Implementation of Nationwide Real-time Whole-genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation.
Jackson Brendan R, Tarr Cheryl, Strain Errol, Jackson Kelly A, Conrad Amanda, Carleton Heather, Katz Lee S, Stroika Steven, Gould L Hannah, Mody Rajal K, Silk Benjamin J, Beal Jennifer, Chen Yi, Timme Ruth, Doyle Matthew, Fields Angela, Wise Matthew, Tillman Glenn, Defibaugh-Chavez Stephanie, Kucerova Zuzana, Sabol Ashley, Roache Katie, Trees Eija, Simmons Mustafa, Wasilenko Jamie, Kubota Kristy, Pouseele Hannes, Klimke William, Besser John, Brown Eric, Allard Marc, Gerner-Smidt Peter. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 63(3) 380-6 .
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 63(3) 380-6
Evolutionary Relationships of Outbreak-associated Listeria monocytogenes Strains of Serotypes 1/2a and 1/2b Determined by Whole Genome Sequencing.
Bergholz Teresa M, den Bakker Henk C, Katz Lee S, Silk Benjamin J, Jackson Kelly A, Kucerova Zuzana, Joseph Lavin A, Turnsek Maryann, Gladney Lori M, Halpin Jessica L, Xavier Karen, Gossack Joseph, Ward Todd J, Frace Michael, Tarr Cheryl L. Applied and environmental microbiology 2015 Nov .
Applied and environmental microbiology 2015 Nov
Phylodynamic analysis of clinical and environmental Vibrio cholerae isolates from Haiti reveals diversification driven by positive selection.
Azarian Taj, Ali Afsar, Johnson Judith A, Mohr David, Prosperi Mattia, Veras Nazle M, Jubair Mohammed, Strickland Samantha L, Rashid Mohammad H, Alam Meer T, Weppelmann Thomas A, Katz Lee S, Tarr Cheryl L, Colwell Rita R, Morris J Glenn, Salemi Marco. MBio 2014 5(6) .
MBio 2014 5(6)
Genome Sequences of Vibrio navarrensis, a Potential Human Pathogen.
Gladney Lori M, Katz Lee S, Knipe Kristen M, Rowe Lori A, Conley Andrew B, Rishishwar Lavanya, Mariño-Ramírez Leonardo, Jordan I King, Tarr Cheryl L. Genome Announc 2014 2(6) .
Genome Announc 2014 2(6)
Environmental surveillance for toxigenic Vibrio cholerae in surface waters of Haiti.
Kahler Amy M, Haley Bradd J, Chen Arlene, Mull Bonnie J, Tarr Cheryl L, Turnsek Maryann, Katz Lee S, Humphrys Michael S, Derado Gordana, Freeman Nicole, Boncy Jacques, Colwell Rita R, Huq Anwar, Hill Vincent R. Am. J. Trop. Med. Hyg. 2015 Jan 92(1) 118-25 .
Am. J. Trop. Med. Hyg. 2015 Jan 92(1) 118-25
Draft Genome Sequence of Environmental Vibrio cholerae 2012EL-1759 with Similarities to the V. cholerae O1 Classical Biotype.
Katz Lee S, Turnsek Maryann, Kahler Amy, Hill Vincent R, Boyd E Fidelma, Tarr Cheryl L. Genome Announc 2014 2(4) .
Genome Announc 2014 2(4)
Genomic basis of a polyagglutinating isolate of Neisseria meningitidis.
Rishishwar Lavanya, Katz Lee S, Sharma Nitya V, Rowe Lori, Frace Michael, Dolan Thomas Jennifer, Harcourt Brian H, Mayer Leonard W, Jordan I King. J. Bacteriol. 2012 Oct 194(20) 5649-56 .
J. Bacteriol. 2012 Oct 194(20) 5649-56
Genome sequences for six Rhodanobacter strains, isolated from soils and the terrestrial subsurface, with variable denitrification capabilities.
Kostka Joel E, Green Stefan J, Rishishwar Lavanya, Prakash Om, Katz Lee S, Mariño-Ramírez Leonardo, Jordan I King, Munk Christine, Ivanova Natalia, Mikhailova Natalia, Watson David B, Brown Steven D, Palumbo Anthony V, Brooks Scott C. J. Bacteriol. 2012 Aug 194(16) 4461-2 .
J. Bacteriol. 2012 Aug 194(16) 4461-2
Evaluation of new biomarker genes for differentiating Haemophilus influenzae from Haemophilus haemolyticus.
Theodore M Jordan, Anderson Raydel D, Wang Xin, Katz Lee S, Vuong Jeni T, Bell Melissa E, Juni Billie A, Lowther Sara A, Lynfield Ruth, MacNeil Jessica R, Mayer Leonard W. J. Clin. Microbiol. 2012 Apr 50(4) 1422-4 .
J. Clin. Microbiol. 2012 Apr 50(4) 1422-4
Genome sequences for five strains of the emerging pathogen Haemophilus haemolyticus.
Jordan I King, Conley Andrew B, Antonov Ivan V, Arthur Robert A, Cook Erin D, Cooper Guy P, Jones Bernard L, Knipe Kristen M, Lee Kevin J, Liu Xing, Mitchell Gabriel J, Pande Pushkar R, Petit Robert A, Qin Shaopu, Rajan Vani N, Sarda Shruti, Sebastian Aswathy, Tang Shiyuyun, Thapliyal Racchit, Varghese Neha J, Ye Tianjun, Katz Lee S, Wang Xin, Rowe Lori, Frace Michael, Mayer Leonard W. J. Bacteriol. 2011 Oct 193(20) 5879-80 .
J. Bacteriol. 2011 Oct 193(20) 5879-80
Using single-nucleotide polymorphisms to discriminate disease-associated from carried genomes of Neisseria meningitidis.
Katz Lee S, Sharma Nitya V, Harcourt Brian H, Thomas Jennifer Dolan, Wang Xin, Mayer Leonard W, Jordan I King. J. Bacteriol. 2011 Jul 193(14) 3633-41 .
J. Bacteriol. 2011 Jul 193(14) 3633-41
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