CDC-Authored Genomics and Precision Health Publications Database

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Last data update: Mar 29, 2023. (Total: 4251 publications since 2011)

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Records 1-30 (of 42 Records)

Query Trace: all>>Yury Khudyakov[CDC Author]
A Novel Information-Theory-Based Genetic Distance That Approximates Phenotypic Differences. David S Campo, Alexander Mosa, and Yury Khudyakov Journal of computational biology : a journal of computational molecular cell biology 2023 Similar articles in PubMed DOI:10.1089/cmb.2022.0395
SOPHIE: Viral outbreak investigation and transmission history reconstruction in a joint phylogenetic and network theory framework. Pavel Skums, Fatemeh Mohebbi, Vyacheslav Tsyvina, Pelin Icer Baykal, Alina Nemira, Sumathi Ramachandran, and Yury Khudyakov Cell systems 2022 13(10) 844-856.e4 Similar articles in PubMed DOI:10.1016/j.cels.2022.07.005
Primary case inference in viral outbreaks through analysis of intra-host variant population. J Walker Gussler, David S Campo, Zoya Dimitrova, Pavel Skums, and Yury Khudyakov BMC bioinformatics 2022 23(1) 62 Similar articles in PubMed DOI:10.1186/s12859-022-04585-2
Changing Molecular Epidemiology of Hepatitis A Virus Infection, United States, 1996-2019. Sumathi Ramachandran, Guo-Liang Xia, Zoya Dimitrova, Yulin Lin, Martha Montgomery, Ryan Augustine, Saleem Kamili, and Yury Khudyakov Emerging infectious diseases 2021 27(6) 1742-1745 Similar articles in PubMed DOI:10.3201/eid2706.203036
Quantitative differences between intra-host HCV populations from persons with recently established and persistent infections. Pelin B Icer Baykal, James Lara, Yury Khudyakov, Alex Zelikovsky, and Pavel Skums Virus evolution 2021 Jan 7(1) veaa103 Similar articles in PubMed DOI:10.1093/ve/veaa103
Convex hulls in hamming space enable efficient search for similarity and clustering of genomic sequences. David S Campo, and Yury Khudyakov BMC bioinformatics 2020 Dec 21(Suppl 18) 482 Similar articles in PubMed DOI:10.1186/s12859-020-03811-z
Accurate spatiotemporal mapping of drug overdose deaths by machine learning of drug-related web-searches. David S Campo, Joseph W Gussler, Amanda Sue, Pavel Skums, and Yury Khudyakov PloS one 2020 15(12) e0243622 Similar articles in PubMed DOI:10.1371/journal.pone.0243622
Complex genetic encoding of the hepatitis B virus on-drug persistence. Hong Thai, James Lara, Xiaojun Xu, Kathryn Kitrinos, Anuj Gaggar, Henry Lik Yuen Chan, Guo-Liang Xia, Lilia Ganova-Raeva, and Yury Khudyakov Scientific reports 2020 Sep 10(1) 15574 Similar articles in PubMed DOI:10.1038/s41598-020-72467-9
Machine learning can accelerate discovery and application of cyber-molecular cancer diagnostics. David S Campo, and Yury Khudyakov Journal of medical artificial intelligence 2020 Mar 3(7) Similar articles in PubMed DOI:10.21037/jmai.2020.01.01
Entropy of mitochondrial DNA circulating in blood is associated with hepatocellular carcinoma. David S Campo, Vishal Nayak, Ganesh Srinivasamoorthy, and Yury Khudyakov BMC medical genomics 2019 Jun 12(Suppl 4) 74 Similar articles in PubMed DOI:10.1186/s12920-019-0506-7
HCV transmission in high-risk communities in Bulgaria. Lilia Ganova-Raeva, Zoya Dimitrova, Ivailo Alexiev, Lili Punkova, Amanda Sue, Guo-Liang Xia, Anna Gancheva, Reneta Dimitrova, Asya Kostadinova, Elitsa Golkocheva-Markova, and Yury Khudyakov PloS one 2019 14(3) e0212350 Similar articles in PubMed DOI:10.1371/journal.pone.0212350
A large HCV transmission network enabled a fast-growing HIV outbreak in rural Indiana, 2015. Sumathi Ramachandran, Hong Thai, Joseph C Forbi, Romeo Regi Galang, Zoya Dimitrova, Guo-Liang Xia, Yulin Lin, Lili T Punkova, Pamela R Pontones, Jessica Gentry, Sara J Blosser, Judith Lovchik, William M Switzer, Eyasu Teshale, Philip Peters, John Ward, Yury Khudyakov, and EBioMedicine 2018 Nov Similar articles in PubMed DOI:10.1016/j.ebiom.2018.10.007
Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants. Viachaslau Tsyvina, David S Campo, Seth Sims, Alex Zelikovsky, Yury Khudyakov, and Pavel Skums BMC bioinformatics 2018 Oct (Suppl 11) 360 Similar articles in PubMed DOI:10.1186/s12859-018-2333-9
Automated quality control for a molecular surveillance system. Seth Sims, Atkinson G Longmire, David S Campo, Sumathi Ramachandran, Magdalena Medrzycki, Lilia Ganova-Raeva, Yulin Lin, Amanda Sue, Hong Thai, Alexander Zelikovsky, and Yury Khudyakov BMC bioinformatics 2018 Oct (Suppl 11) 358 Similar articles in PubMed DOI:10.1186/s12859-018-2329-5
HCV adaptation to HIV coinfection. James Lara, Mahder A Teka, Seth Sims, Guo-Liang Xia, Sumathi Ramachandran, and Yury Khudyakov Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2018 Nov 65216-225 Similar articles in PubMed DOI:10.1016/j.meegid.2018.07.039
Reactivation of a Vaccine Escape Hepatitis B Virus Mutant in a Cambodian Patient During Anti-Hepatitis C Virus Therapy. Dahlene N Fusco, Lilia Ganova-Raeva, Yury Khudyakov, Lili Punkova, Aisha Mohamed, Scarlett Se Yun Cheon, Prapti Koirala, Karin L Andersson, Gonzague Jourdain, Camille Sureau, Raymond T Chung, and Georg Lauer Frontiers in medicine 2018 597 Similar articles in PubMed DOI:10.3389/fmed.2018.00097
QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data. Pavel Skums, Alex Zelikovsky, Rahul Singh, Walker Gussler, Zoya Dimitrova, Sergey Knyazev, Igor Mandric, Sumathi Ramachandran, David Campo, Deeptanshu Jha, Leonid Bunimovich, Elizabeth Costenbader, Connie Sexton, Siobhan O'Connor, Guo-Liang Xia, and Yury Khudyakov Bioinformatics (Oxford, England) 2018 Jan (1) 163-170 Similar articles in PubMed DOI:10.1093/bioinformatics/btx402
Transmissibility of intra-host hepatitis C virus variants. David S Campo, June Zhang, Sumathi Ramachandran, and Yury Khudyakov BMC genomics 2017 Dec (Suppl 10) 881 Similar articles in PubMed DOI:10.1186/s12864-017-4267-4
Identification of recent cases of hepatitis C virus infection using physical-chemical properties of hypervariable region 1 and a radial basis function neural network classifier. James Lara, Mahder Teka, and Yury Khudyakov BMC genomics 2017 Dec (Suppl 10) 880 Similar articles in PubMed DOI:10.1186/s12864-017-4269-2
Inference of genetic relatedness between viral quasispecies from sequencing data. Olga Glebova, Sergey Knyazev, Andrew Melnyk, Alexander Artyomenko, Yury Khudyakov, Alex Zelikovsky, and Pavel Skums BMC genomics 2017 Dec (Suppl 10) 918 Similar articles in PubMed DOI:10.1186/s12864-017-4274-5
GHOST: global hepatitis outbreak and surveillance technology. Atkinson G Longmire, Seth Sims, Inna Rytsareva, David S Campo, Pavel Skums, Zoya Dimitrova, Sumathi Ramachandran, Magdalena Medrzycki, Hong Thai, Lilia Ganova-Raeva, Yulin Lin, Lili T Punkova, Amanda Sue, Massimo Mirabito, Silver Wang, Robin Tracy, Victor Bolet, Thom Sukalac, Chris Lynberg, and Yury Khudyakov BMC genomics 2017 Dec (Suppl 10) 916 Similar articles in PubMed DOI:10.1186/s12864-017-4268-3
Efficient detection of viral transmissions with Next-Generation Sequencing data. Inna Rytsareva, David S Campo, Yueli Zheng, Seth Sims, Sharma V Thankachan, Cansu Tetik, Jain Chirag, Sriram P Chockalingam, Amanda Sue, Srinivas Aluru, and Yury Khudyakov BMC genomics 2017 May (Suppl 4) 372 Similar articles in PubMed DOI:10.1186/s12864-017-3732-4
Increased Mitochondrial Genetic Diversity in Persons Infected With Hepatitis C Virus. David S Campo, Ha-Jung Roh, Brian L Pearlman, Daniel S Fierer, Sumathi Ramachandran, Gilberto Vaughan, Andrew Hinds, Zoya Dimitrova, Pavel Skums, and Yury Khudyakov Cellular and molecular gastroenterology and hepatology 2016 Sep (5) 676-684 Similar articles in PubMed DOI:10.1016/j.jcmgh.2016.05.012
Modeling the functional state of the reverse transcriptase of hepatitis B virus and its application to probing drug-protein interaction. Xiaojun Xu, Hong Thai, Kathryn M Kitrinos, Guoliang Xia, Anuj Gaggar, Matthew Paulson, Lilia Ganova-Raeva, Yury Khudyakov, and James Lara BMC bioinformatics 2016 17 Suppl 8280 Similar articles in PubMed DOI:10.1186/s12859-016-1116-4
HIV Infection Linked to Injection Use of Oxymorphone in Indiana, 2014-2015. Philip J Peters, Pamela Pontones, Karen W Hoover, Monita R Patel, Romeo R Galang, Jessica Shields, Sara J Blosser, Michael W Spiller, Brittany Combs, William M Switzer, Caitlin Conrad, Jessica Gentry, Yury Khudyakov, Dorothy Waterhouse, S Michele Owen, Erika Chapman, Jeremy C Roseberry, Veronica McCants, Paul J Weidle, Dita Broz, Taraz Samandari, Jonathan Mermin, Jennifer Walthall, John T Brooks, Joan M Duwve, and The New England journal of medicine 2016 Jul 375(3) 229-39 Similar articles in PubMed DOI:10.1056/NEJMoa1515195
The spread of hepatitis C virus genotype 1a in North America: a retrospective phylogenetic study. Jeffrey B Joy, Rosemary M McCloskey, Thuy Nguyen, Richard H Liang, Yury Khudyakov, Andrea Olmstead, Mel Krajden, John W Ward, P Richard Harrigan, Julio S G Montaner, and Art F Y Poon The Lancet. Infectious diseases 2016 Mar Similar articles in PubMed DOI:10.1016/S1473-3099(16)00124-9
Accurate genetic detection of hepatitis C virus transmissions in outbreak settings. David S Campo, Guo-Liang Xia, Zoya Dimitrova, Yulin Lin, Joseph C Forbi, Lilia Ganova-Raeva, Lili Punkova, Sumathi Ramachandran, Hong Thai, Pavel Skums, Seth Sims, Inna Rytsareva, Gilberto Vaughan, Ha-Jung Roh, Michael A Purdy, Amanda Sue, and Yury Khudyakov The Journal of infectious diseases 2015 Nov Similar articles in PubMed DOI:10.1093/infdis/jiv542
Cryptic Hepatitis B and E in Patients With Acute Hepatitis of Unknown Etiology. Lilia Ganova-Raeva, Lili Punkova, David S Campo, Zoya Dimitrova, Pavel Skums, Nga H Vu, Do T Dat, Harry R Dalton, and Yury Khudyakov J. Infect. Dis. 2015 Jun 8. Similar articles in PubMed DOI:10.1093/infdis/jiv315
Antigenic cooperation among intrahost HCV variants organized into a complex network of cross-immunoreactivity. Pavel Skums, Leonid Bunimovich, and Yury Khudyakov Proc. Natl. Acad. Sci. U.S.A. 2015 May 4. Similar articles in PubMed DOI:10.1073/pnas.1422942112
A molecular phylogenetics-based approach for identifying recent hepatitis C virus transmission events. Andrea D Olmstead, Jeffrey B Joy, Vincent Montoya, Iris Luo, Art F Y Poon, Brendan Jacka, François Lamoury, Tanya Applegate, Julio Montaner, Yury Khudyakov, Jason Grebely, Darrel Cook, P Richard Harrigan, and Mel Krajden Infect. Genet. Evol. 2015 Jul 33101-9 Similar articles in PubMed DOI:10.1016/j.meegid.2015.04.017