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Public Health Genomics and Precision Health Knowledge Base (v8.4)
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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB
CDC-Authored Genomics and Precision Health Publications Database
Last data update: Mar 29, 2023
. (Total: 4251 publications since 2011)
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Records 1-30 (of 42 Records)
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all>>Yury Khudyakov[CDC Author]
A Novel Information-Theory-Based Genetic Distance That Approximates Phenotypic Differences.
David S Campo
, Alexander Mosa, and
Yury Khudyakov
Journal of computational biology : a journal of computational molecular cell biology 2023
Similar articles in PubMed
DOI:
10.1089/cmb.2022.0395
SOPHIE: Viral outbreak investigation and transmission history reconstruction in a joint phylogenetic and network theory framework.
Pavel Skums, Fatemeh Mohebbi, Vyacheslav Tsyvina, Pelin Icer Baykal, Alina Nemira,
Sumathi Ramachandran
, and
Yury Khudyakov
Cell systems 2022 13(10) 844-856.e4
Similar articles in PubMed
DOI:
10.1016/j.cels.2022.07.005
Primary case inference in viral outbreaks through analysis of intra-host variant population.
J Walker Gussler,
David S Campo
,
Zoya Dimitrova
, Pavel Skums, and
Yury Khudyakov
BMC bioinformatics 2022 23(1) 62
Similar articles in PubMed
DOI:
10.1186/s12859-022-04585-2
Changing Molecular Epidemiology of Hepatitis A Virus Infection, United States, 1996-2019.
Sumathi Ramachandran
,
Guo-Liang Xia
,
Zoya Dimitrova
,
Yulin Lin
,
Martha Montgomery
,
Ryan Augustine
,
Saleem Kamili
, and
Yury Khudyakov
Emerging infectious diseases 2021 27(6) 1742-1745
Similar articles in PubMed
DOI:
10.3201/eid2706.203036
Quantitative differences between intra-host HCV populations from persons with recently established and persistent infections.
Pelin B Icer Baykal,
James Lara
,
Yury Khudyakov
, Alex Zelikovsky, and Pavel Skums
Virus evolution 2021 Jan 7(1) veaa103
Similar articles in PubMed
DOI:
10.1093/ve/veaa103
Convex hulls in hamming space enable efficient search for similarity and clustering of genomic sequences.
David S Campo
, and
Yury Khudyakov
BMC bioinformatics 2020 Dec 21(Suppl 18) 482
Similar articles in PubMed
DOI:
10.1186/s12859-020-03811-z
Accurate spatiotemporal mapping of drug overdose deaths by machine learning of drug-related web-searches.
David S Campo
, Joseph W Gussler,
Amanda Sue
, Pavel Skums, and
Yury Khudyakov
PloS one 2020 15(12) e0243622
Similar articles in PubMed
DOI:
10.1371/journal.pone.0243622
Complex genetic encoding of the hepatitis B virus on-drug persistence.
Hong Thai
,
James Lara
, Xiaojun Xu, Kathryn Kitrinos, Anuj Gaggar, Henry Lik Yuen Chan,
Guo-Liang Xia
,
Lilia Ganova-Raeva
, and
Yury Khudyakov
Scientific reports 2020 Sep 10(1) 15574
Similar articles in PubMed
DOI:
10.1038/s41598-020-72467-9
Machine learning can accelerate discovery and application of cyber-molecular cancer diagnostics.
David S Campo
, and
Yury Khudyakov
Journal of medical artificial intelligence 2020 Mar 3(7)
Similar articles in PubMed
DOI:
10.21037/jmai.2020.01.01
Entropy of mitochondrial DNA circulating in blood is associated with hepatocellular carcinoma.
David S Campo
, Vishal Nayak, Ganesh Srinivasamoorthy, and
Yury Khudyakov
BMC medical genomics 2019 Jun 12(Suppl 4) 74
Similar articles in PubMed
DOI:
10.1186/s12920-019-0506-7
HCV transmission in high-risk communities in Bulgaria.
Lilia Ganova-Raeva
,
Zoya Dimitrova
, Ivailo Alexiev,
Lili Punkova
,
Amanda Sue
,
Guo-Liang Xia
, Anna Gancheva, Reneta Dimitrova, Asya Kostadinova, Elitsa Golkocheva-Markova, and
Yury Khudyakov
PloS one 2019 14(3) e0212350
Similar articles in PubMed
DOI:
10.1371/journal.pone.0212350
A large HCV transmission network enabled a fast-growing HIV outbreak in rural Indiana, 2015.
Sumathi Ramachandran
,
Hong Thai
,
Joseph C Forbi
,
Romeo Regi Galang
,
Zoya Dimitrova
,
Guo-Liang Xia
,
Yulin Lin
,
Lili T Punkova
, Pamela R Pontones, Jessica Gentry, Sara J Blosser, Judith Lovchik,
William M Switzer
,
Eyasu Teshale
,
Philip Peters
,
John Ward
,
Yury Khudyakov
, and
EBioMedicine 2018 Nov
Similar articles in PubMed
DOI:
10.1016/j.ebiom.2018.10.007
Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants.
Viachaslau Tsyvina,
David S Campo
,
Seth Sims
, Alex Zelikovsky,
Yury Khudyakov
, and
Pavel Skums
BMC bioinformatics 2018 Oct (Suppl 11) 360
Similar articles in PubMed
DOI:
10.1186/s12859-018-2333-9
Automated quality control for a molecular surveillance system.
Seth Sims, Atkinson G Longmire,
David S Campo
,
Sumathi Ramachandran
,
Magdalena Medrzycki
,
Lilia Ganova-Raeva
,
Yulin Lin
,
Amanda Sue
,
Hong Thai
, Alexander Zelikovsky, and
Yury Khudyakov
BMC bioinformatics 2018 Oct (Suppl 11) 358
Similar articles in PubMed
DOI:
10.1186/s12859-018-2329-5
HCV adaptation to HIV coinfection.
James Lara
,
Mahder A Teka
,
Seth Sims
,
Guo-Liang Xia
,
Sumathi Ramachandran
, and
Yury Khudyakov
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2018 Nov 65216-225
Similar articles in PubMed
DOI:
10.1016/j.meegid.2018.07.039
Reactivation of a Vaccine Escape Hepatitis B Virus Mutant in a Cambodian Patient During Anti-Hepatitis C Virus Therapy.
Dahlene N Fusco,
Lilia Ganova-Raeva
,
Yury Khudyakov
,
Lili Punkova
, Aisha Mohamed, Scarlett Se Yun Cheon, Prapti Koirala, Karin L Andersson, Gonzague Jourdain, Camille Sureau, Raymond T Chung, and Georg Lauer
Frontiers in medicine 2018 597
Similar articles in PubMed
DOI:
10.3389/fmed.2018.00097
QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data.
Pavel Skums
, Alex Zelikovsky, Rahul Singh,
Walker Gussler
,
Zoya Dimitrova
, Sergey Knyazev, Igor Mandric,
Sumathi Ramachandran
,
David Campo
, Deeptanshu Jha, Leonid Bunimovich, Elizabeth Costenbader,
Connie Sexton
,
Siobhan O'Connor
,
Guo-Liang Xia
, and
Yury Khudyakov
Bioinformatics (Oxford, England) 2018 Jan (1) 163-170
Similar articles in PubMed
DOI:
10.1093/bioinformatics/btx402
Transmissibility of intra-host hepatitis C virus variants.
David S Campo
, June Zhang,
Sumathi Ramachandran
, and
Yury Khudyakov
BMC genomics 2017 Dec (Suppl 10) 881
Similar articles in PubMed
DOI:
10.1186/s12864-017-4267-4
Identification of recent cases of hepatitis C virus infection using physical-chemical properties of hypervariable region 1 and a radial basis function neural network classifier.
James Lara
,
Mahder Teka
, and
Yury Khudyakov
BMC genomics 2017 Dec (Suppl 10) 880
Similar articles in PubMed
DOI:
10.1186/s12864-017-4269-2
Inference of genetic relatedness between viral quasispecies from sequencing data.
Olga Glebova, Sergey Knyazev, Andrew Melnyk, Alexander Artyomenko,
Yury Khudyakov
, Alex Zelikovsky, and
Pavel Skums
BMC genomics 2017 Dec (Suppl 10) 918
Similar articles in PubMed
DOI:
10.1186/s12864-017-4274-5
GHOST: global hepatitis outbreak and surveillance technology.
Atkinson G Longmire
,
Seth Sims
,
Inna Rytsareva
,
David S Campo
,
Pavel Skums
,
Zoya Dimitrova
,
Sumathi Ramachandran
,
Magdalena Medrzycki
,
Hong Thai
,
Lilia Ganova-Raeva
,
Yulin Lin
,
Lili T Punkova
,
Amanda Sue
,
Massimo Mirabito
,
Silver Wang
,
Robin Tracy
,
Victor Bolet
,
Thom Sukalac
,
Chris Lynberg
, and
Yury Khudyakov
BMC genomics 2017 Dec (Suppl 10) 916
Similar articles in PubMed
DOI:
10.1186/s12864-017-4268-3
Efficient detection of viral transmissions with Next-Generation Sequencing data.
Inna Rytsareva
,
David S Campo
,
Yueli Zheng
,
Seth Sims
, Sharma V Thankachan, Cansu Tetik, Jain Chirag, Sriram P Chockalingam,
Amanda Sue
, Srinivas Aluru, and
Yury Khudyakov
BMC genomics 2017 May (Suppl 4) 372
Similar articles in PubMed
DOI:
10.1186/s12864-017-3732-4
Increased Mitochondrial Genetic Diversity in Persons Infected With Hepatitis C Virus.
David S Campo
,
Ha-Jung Roh
, Brian L Pearlman, Daniel S Fierer,
Sumathi Ramachandran
,
Gilberto Vaughan
, Andrew Hinds,
Zoya Dimitrova
,
Pavel Skums
, and
Yury Khudyakov
Cellular and molecular gastroenterology and hepatology 2016 Sep (5) 676-684
Similar articles in PubMed
DOI:
10.1016/j.jcmgh.2016.05.012
Modeling the functional state of the reverse transcriptase of hepatitis B virus and its application to probing drug-protein interaction.
Xiaojun Xu
,
Hong Thai
, Kathryn M Kitrinos,
Guoliang Xia
, Anuj Gaggar, Matthew Paulson,
Lilia Ganova-Raeva
,
Yury Khudyakov
, and
James Lara
BMC bioinformatics 2016 17 Suppl 8280
Similar articles in PubMed
DOI:
10.1186/s12859-016-1116-4
HIV Infection Linked to Injection Use of Oxymorphone in Indiana, 2014-2015.
Philip J Peters
, Pamela Pontones,
Karen W Hoover
,
Monita R Patel
,
Romeo R Galang
, Jessica Shields, Sara J Blosser,
Michael W Spiller
, Brittany Combs, William M Switzer, Caitlin Conrad, Jessica Gentry,
Yury Khudyakov
,
Dorothy Waterhouse
,
S Michele Owen
, Erika Chapman, Jeremy C Roseberry,
Veronica McCants
,
Paul J Weidle
, Dita Broz,
Taraz Samandari
,
Jonathan Mermin
, Jennifer Walthall,
John T Brooks
, Joan M Duwve, and
The New England journal of medicine 2016 Jul 375(3) 229-39
Similar articles in PubMed
DOI:
10.1056/NEJMoa1515195
The spread of hepatitis C virus genotype 1a in North America: a retrospective phylogenetic study.
Jeffrey B Joy, Rosemary M McCloskey, Thuy Nguyen, Richard H Liang,
Yury Khudyakov
, Andrea Olmstead, Mel Krajden,
John W Ward
, P Richard Harrigan, Julio S G Montaner, and Art F Y Poon
The Lancet. Infectious diseases 2016 Mar
Similar articles in PubMed
DOI:
10.1016/S1473-3099(16)00124-9
Accurate genetic detection of hepatitis C virus transmissions in outbreak settings.
David S Campo
,
Guo-Liang Xia
,
Zoya Dimitrova
,
Yulin Lin
,
Joseph C Forbi
,
Lilia Ganova-Raeva
,
Lili Punkova
,
Sumathi Ramachandran
,
Hong Thai
,
Pavel Skums
,
Seth Sims
,
Inna Rytsareva
,
Gilberto Vaughan
,
Ha-Jung Roh
,
Michael A Purdy
,
Amanda Sue
, and
Yury Khudyakov
The Journal of infectious diseases 2015 Nov
Similar articles in PubMed
DOI:
10.1093/infdis/jiv542
Cryptic Hepatitis B and E in Patients With Acute Hepatitis of Unknown Etiology.
Lilia Ganova-Raeva
,
Lili Punkova
,
David S Campo
,
Zoya Dimitrova
,
Pavel Skums
, Nga H Vu, Do T Dat, Harry R Dalton, and
Yury Khudyakov
J. Infect. Dis. 2015 Jun 8.
Similar articles in PubMed
DOI:
10.1093/infdis/jiv315
Antigenic cooperation among intrahost HCV variants organized into a complex network of cross-immunoreactivity.
Pavel Skums
, Leonid Bunimovich, and
Yury Khudyakov
Proc. Natl. Acad. Sci. U.S.A. 2015 May 4.
Similar articles in PubMed
DOI:
10.1073/pnas.1422942112
A molecular phylogenetics-based approach for identifying recent hepatitis C virus transmission events.
Andrea D Olmstead, Jeffrey B Joy, Vincent Montoya, Iris Luo, Art F Y Poon, Brendan Jacka, François Lamoury, Tanya Applegate, Julio Montaner,
Yury Khudyakov
, Jason Grebely, Darrel Cook, P Richard Harrigan, and Mel Krajden
Infect. Genet. Evol. 2015 Jul 33101-9
Similar articles in PubMed
DOI:
10.1016/j.meegid.2015.04.017
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Page last updated:
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