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Public Health Genomics and Precision Health Knowledge Base (v9.0)
PHGKB
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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)
CDC-Authored Genomics and Precision Health Publications Database
Last data update: Mar 18, 2024
. (Total: 5445 publications)
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Records 1-30 (of 42 Records)
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all>>Yury Khudyakov[CDC Author]
Association of antigenic properties to structure of the hepatitis C virus NS3 protein.
Lara J
,
Khudyakov Y
.
In Silico Biol 2011 11 203-12
Hepatitis C virus antigenic convergence.
Campo DS
,
Dimitrova Z
,
Yokosawa J
,
Hoang D
,
Perez NO
,
Ramachandran S
,
Khudyakov Y
.
Sci Rep 2012 2 267
A Novel Information-Theory-Based Genetic Distance That Approximates Phenotypic Differences.
Campo DS
,
Mosa A ,
Khudyakov Y
.
J Comput Biol 2023 30 (4) 420-431
SOPHIE: Viral outbreak investigation and transmission history reconstruction in a joint phylogenetic and network theory framework.
Skums P , Mohebbi F , Tsyvina V , Baykal PI , Nemira A ,
Ramachandran S
,
Khudyakov Y
.
Cell Syst 2022 13 (10) 844-856.e4
Primary case inference in viral outbreaks through analysis of intra-host variant population.
Gussler JW
,
Campo DS ,
Dimitrova Z
,
Skums P
,
Khudyakov Y
.
BMC Bioinformatics 2022 23 (1) 62
Changing Molecular Epidemiology of Hepatitis A Virus Infection, United States, 1996-2019.
Ramachandran S
,
Xia GL
,
Dimitrova Z
,
Lin Y
,
Montgomery M
,
Augustine R
,
Kamili S
,
Khudyakov Y
.
Emerg Infect Dis 2021 27 (6) 1742-1745
Quantitative differences between intra-host HCV populations from persons with recently established and persistent infections.
Icer Baykal PB ,
Lara J
,
Khudyakov Y
,
Zelikovsky A , Skums P .
Virus Evol 2021 7 (1) veaa103
Convex hulls in hamming space enable efficient search for similarity and clustering of genomic sequences.
Campo DS
,
Khudyakov Y
.
BMC Bioinformatics 2020 21 482
Accurate spatiotemporal mapping of drug overdose deaths by machine learning of drug-related web-searches.
Campo DS
,
Gussler JW
,
Sue A
,
Skums P ,
Khudyakov Y
.
PLoS One 2020 15 (12) e0243622
Complex genetic encoding of the hepatitis B virus on-drug persistence.
Thai H
,
Lara J
,
Xu X
,
Kitrinos K , Gaggar A , Chan HLY ,
Xia GL
,
Ganova-Raeva L
,
Khudyakov Y
.
Sci Rep 2020 10 (1) 15574
Machine learning can accelerate discovery and application of cyber-molecular cancer diagnostics.
Campo DS
,
Khudyakov Y
.
J Med Artif Intell 2020 3 (7)
Entropy of mitochondrial DNA circulating in blood is associated with hepatocellular carcinoma.
Campo DS
,
Nayak V
,
Srinivasamoorthy G
,
Khudyakov Y
.
BMC Med Genomics 2019 12 74
HCV transmission in high-risk communities in Bulgaria.
Ganova-Raeva L
,
Dimitrova Z
,
Alexiev I ,
Punkova L
,
Sue A
,
Xia GL
,
Gancheva A , Dimitrova R , Kostadinova A , Golkocheva-Markova E ,
Khudyakov Y
.
PLoS One 2019 14 (3) e0212350
A large HCV transmission network enabled a fast-growing HIV outbreak in rural Indiana, 2015.
Ramachandran S
,
Thai H
,
Forbi JC
,
Galang RR
,
Dimitrova Z
,
Xia GL
,
Lin Y
,
Punkova LT
,
Pontones PR , Gentry J , Blosser SJ , Lovchik J ,
Switzer WM
,
Teshale E
,
Peters P
,
Ward J
,
Khudyakov Y
.
EBioMedicine 2018 37 374-381
Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants.
Tsyvina V ,
Campo DS
,
Sims S
,
Zelikovsky A ,
Khudyakov Y
,
Skums P
.
BMC Bioinformatics 2018 19 360
Automated quality control for a molecular surveillance system.
Sims S
,
Longmire AG
,
Campo DS
,
Ramachandran S
,
Medrzycki M
,
Ganova-Raeva L
,
Lin Y
,
Sue A
,
Thai H
,
Zelikovsky A ,
Khudyakov Y
.
BMC Bioinformatics 2018 19 358
HCV adaptation to HIV coinfection.
Lara J
,
Teka MA
,
Sims S
,
Xia GL
,
Ramachandran S
,
Khudyakov Y
.
Infect Genet Evol 2018 65 216-225
Reactivation of a Vaccine Escape Hepatitis B Virus Mutant in a Cambodian Patient During Anti-Hepatitis C Virus Therapy.
Fusco DN ,
Ganova-Raeva L
,
Khudyakov Y
,
Punkova L
,
Mohamed A , Cheon SSY , Koirala P , Andersson KL , Jourdain G , Sureau C , Chung RT , Lauer G .
Front Med (Lausanne) 2018 5 97
QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data.
Skums P
,
Zelikovsky A , Singh R ,
Gussler W
,
Dimitrova Z
,
Knyazev S , Mandric I ,
Ramachandran S
,
Campo D
,
Jha D , Bunimovich L , Costenbader E ,
Sexton C
,
O'Connor S
,
Xia GL
,
Khudyakov Y
.
Bioinformatics 2018 34 (1) 163-170
Transmissibility of intra-host hepatitis C virus variants.
Campo DS
,
Zhang J
,
Ramachandran S
,
Khudyakov Y
.
BMC Genomics 2017 18 881
Identification of recent cases of hepatitis C virus infection using physical-chemical properties of hypervariable region 1 and a radial basis function neural network classifier.
Lara J
,
Teka M
,
Khudyakov Y
.
BMC Genomics 2017 18 880
Inference of genetic relatedness between viral quasispecies from sequencing data.
Glebova O , Knyazev S , Melnyk A , Artyomenko A ,
Khudyakov Y
,
Zelikovsky A ,
Skums P
.
BMC Genomics 2017 18 918
GHOST: global hepatitis outbreak and surveillance technology.
Longmire AG
,
Sims S
,
Rytsareva I
,
Campo DS
,
Skums P
,
Dimitrova Z
,
Ramachandran S
,
Medrzycki M
,
Thai H
,
Ganova-Raeva L
,
Lin Y
,
Punkova LT
,
Sue A
,
Mirabito M , Wang S , Tracy R ,
Bolet V
,
Sukalac T , Lynberg C ,
Khudyakov Y
.
BMC Genomics 2017 18 916
Efficient detection of viral transmissions with Next-Generation Sequencing data.
Rytsareva I
,
Campo DS
,
Zheng Y
,
Sims S
,
Thankachan SV , Tetik C , Chirag J , Chockalingam SP ,
Sue A
,
Aluru S ,
Khudyakov Y
.
BMC Genomics 2017 18 372
Increased Mitochondrial Genetic Diversity in Persons Infected With Hepatitis C Virus.
Campo DS
,
Roh HJ
,
Pearlman BL , Fierer DS ,
Ramachandran S
,
Vaughan G
,
Hinds A ,
Dimitrova Z
,
Skums P
,
Khudyakov Y
.
Cell Mol Gastroenterol Hepatol 2016 2 (5) 676-684
Modeling the functional state of the reverse transcriptase of hepatitis B virus and its application to probing drug-protein interaction.
Xu X
,
Thai H
,
Kitrinos KM ,
Xia G
,
Gaggar A , Paulson M ,
Ganova-Raeva L
,
Khudyakov Y
,
Lara J
.
BMC Bioinformatics 2016 17 Suppl 8 280
HIV Infection Linked to Injection Use of Oxymorphone in Indiana, 2014-2015.
Peters PJ
,
Pontones P ,
Hoover KW
,
Patel MR
,
Galang RR
,
Shields J , Blosser SJ ,
Spiller MW
,
Combs B ,
Switzer WM
,
Conrad C , Gentry J ,
Khudyakov Y
,
Waterhouse D ,
Owen SM
,
Chapman E , Roseberry JC ,
McCants V
,
Weidle PJ
,
Broz D
,
Samandari T
,
Mermin J
,
Walthall J ,
Brooks JT
,
Duwve JM .
N Engl J Med 2016 375 (3) 229-39
The spread of hepatitis C virus genotype 1a in North America: a retrospective phylogenetic study.
Joy JB , McCloskey RM , Nguyen T , Liang RH ,
Khudyakov Y
,
Olmstead A , Krajden M ,
Ward JW
,
Harrigan PR , Montaner JS , Poon AF .
Lancet Infect Dis 2016 16 (6) 698-702
Accurate genetic detection of hepatitis C virus transmissions in outbreak settings.
Campo DS
,
Xia GL
,
Dimitrova Z
,
Lin Y
,
Forbi JC
,
Ganova-Raeva L
,
Punkova L
,
Ramachandran S
,
Thai H
,
Skums P
,
Sims S
,
Rytsareva I
,
Vaughan G
,
Roh HJ
,
Purdy MA
,
Sue A
,
Khudyakov Y
.
J Infect Dis 2015 213 (6) 957-65
Cryptic Hepatitis B and E in Patients With Acute Hepatitis of Unknown Etiology.
Ganova-Raeva L
,
Punkova L
,
Campo DS
,
Dimitrova Z
,
Skums P
,
Vu NH , Dat DT , Dalton HR ,
Khudyakov Y
.
J Infect Dis 2015 212 (12) 1962-9
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Page last reviewed:
Feb 1, 2024
Page last updated:
Mar 18, 2024
Content source:
Public Health Genomics Branch in the Division of Blood Disorders and Public Health Genomics
,
National Center on Birth Defects and Developmental Disabilities
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