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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB

CDC-Authored Genomics and Precision Health Publications Database


Last data update: May 26, 2022. (Total: 3849 publications since 2011)
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Records 1-30 (of 107 Records)
Query Trace: Whole genome sequencing[original query]
Analysis of Salmonella enterica Isolated from a Mixed-Use Watershed in Georgia, USA: Antimicrobial Resistance, Serotype Diversity, and Genetic Relatedness to Human Isolates.
Sohyun Cho, Lari M Hiott, Sandra L House, Tiffanie A Woodley, Elizabeth A McMillan, Poonam Sharma, John B Barrett, Eric S Adams, Joshua M Brandenburg, Kelley B Hise, Jacob M Bateman McDonald, Elizabeth A Ottesen, Erin K Lipp, Charlene R Jackson, and Jonathan G Frye
Applied and environmental microbiology 2022 e0039322
Household Transmission and Symptomology of SARS-CoV-2 Alpha Variant Among Children-California and Colorado, 2021.
Michelle A Waltenburg, Melissa J Whaley, Rebecca J Chancey, Marisa A P Donnelly, Meagan R Chuey, Raymond Soto, Noah G Schwartz, Victoria T Chu, Sadia Sleweon, David W McCormick, Anna Uehara, Adam C Retchless, Suxiang Tong, Jennifer M Folster, Marla Petway, Natalie J Thornburg, Jan Drobeniuc, Brett Austin, Meghan M Hudziec, Ginger Stringer, Bernadette A Albanese, S E Totten, Shannon R Matzinger, J Erin Staples, Marie E Killerby, Laura J Hughes, Almea Matanock, Mark Beatty, Jacqueline E Tate, Hannah L Kirking, Christopher H Hsu, and
The Journal of pediatrics 2022
Selective Whole-Genome Amplification as a Tool to Enrich Specimens with Low Treponema pallidum Genomic DNA Copies for Whole-Genome Sequencing.
Charles M Thurlow, Sandeep J Joseph, Lilia Ganova-Raeva, Samantha S Katz, Lara Pereira, Cheng Chen, Alyssa Debra, Kendra Vilfort, Kimberly Workowski, Stephanie E Cohen, Hilary Reno, Yongcheng Sun, Mark Burroughs, Mili Sheth, Kai-Hua Chi, Damien Danavall, Susan S Philip, Weiping Cao, Ellen N Kersh, and Allan Pillay
mSphere 2022 e0000922
A Streptococcus pneumoniae lineage usually associated with pneumococcal conjugate vaccine (PCV) serotypes is the most common cause of serotype 35B invasive disease in South Africa, following routine use of PCV.
Kedibone M Ndlangisa, Mignon du Plessis, Stephanie Lo, Linda de Gouveia, Chrispin Chaguza, Martin Antonio, Brenda Kwambana-Adams, Jennifer Cornick, Dean B Everett, Ron Dagan, Paulina A Hawkins, Bernard Beall, Alejandra Corso, Samanta Cristine Grassi Almeida, Theresa J Ochoa, Stephen Obaro, Sadia Shakoor, Eric S Donkor, Rebecca A Gladstone, Pak Leung Ho, Metka Paragi, Sanjay Doiphode, Somporn Srifuengfung, Rebecca Ford, Jennifer Moïsi, Samir K Saha, Godfrey Bigogo, Betuel Sigauque, Özgen Köseoglu Eser, Naima Elmdaghri, Leonid Titov, Paul Turner, K L Ravi Kumar, Rama Kandasamy, Ekaterina Egorova, Margaret Ip, Robert F Breiman, Keith P Klugman, Lesley McGee, Stephen D Bentley, Anne von Gottberg, and The Global Pneumococcal Sequencing Consortium
Microbial genomics 2022 8(4)
Monkeypox in a Traveler Returning from Nigeria - Dallas, Texas, July 2021.
Agam K Rao, Joann Schulte, Tai-Ho Chen, Christine M Hughes, Whitni Davidson, Justin M Neff, Mary Markarian, Kristin C Delea, Suzanne Wada, Allison Liddell, Shane Alexander, Brittany Sunshine, Philip Huang, Heidi Threadgill Honza, Araceli Rey, Benjamin Monroe, Jeffrey Doty, Bryan Christensen, Lisa Delaney, Joel Massey, Michelle Waltenburg, Caroline A Schrodt, David Kuhar, Panayampalli S Satheshkumar, Ashley Kondas, Yu Li, Kimberly Wilkins, Kylie M Sage, Yon Yu, Patricia Yu, Amanda Feldpausch, Jennifer McQuiston, Inger K Damon, Andrea M McCollum, and
MMWR. Morbidity and mortality weekly report 2022 71(14) 509-516
SneakerNet: A modular quality assurance and quality check workflow for primary genomic and metagenomic read data.
Taylor Griswold, Curtis Kapsak, Jessica C Chen, Henk C den Bakker, Grant Williams, Alyssa Kelley, Eshaw Vidyaprakash, and Lee S Katz
Journal of open source software 2022 6(60)
PulseNet International Survey on the Implementation of Whole Genome Sequencing in Low and Middle-Income Countries for Foodborne Disease Surveillance.
Taylor Davedow, Heather Carleton, Kristy Kubota, Daniel Palm, Morgan Schroeder, Peter Gerner-Smidt, Amina Al-Jardani, Isabel Chinen, Kai Man Kam, Anthony M Smith, and Celine Nadon
Foodborne pathogens and disease 2022
Association of Persistent Rubella Virus With Idiopathic Skin Granulomas in Clinically Immunocompetent Adults.
Karolyn A Wanat, Ludmila Perelygina, Min-Hsin Chen, Lijuan Hao, Emily Abernathy, Nicole R Bender, Bridget E Shields, Barbara D Wilson, David Crosby, John Routes, Sara S Samimi, Paul L Haun, Olayemi Sokumbi, Joseph P Icenogle, Kathleen E Sullivan, Misha Rosenbach, and Beth A Drolet
JAMA dermatology 2022
Enhancing meningococcal genomic surveillance in the meningitis belt using high-resolution culture-free whole genome sequencing.
Mark Itsko, Nadav Topaz, Sani Ousmane, Micheal Popoola, Rasmata Ouedraogo, Kadidja Gamougam, Adodo Yao Sadji, Abass Abdul-Karim, Christine Lascols, and Xin Wang
The Journal of infectious diseases 2022
Characterization of a Neisseria gonorrhoeae Ciprofloxacin panel for an antimicrobial resistant Isolate Bank.
Hsi Liu, Kevin Tang, Cau D Pham, Matthew Schmerer, Ellen N Kersh, and Brian H Raphael
PloS one 2022 17(3) e0264149
Antimicrobial Susceptibility Survey of Invasive Neisseria meningitidis, United States 2012-2016.
Caelin C Potts, Lorraine D Rodriguez-Rivera, Adam C Retchless, Fang Hu, Henju Marjuki, Amy E Blain, Lucy A McNamara, and Xin Wang
The Journal of infectious diseases 2022
Clinical severity of, and effectiveness of mRNA vaccines against, covid-19 from omicron, delta, and alpha SARS-CoV-2 variants in the United States: prospective observational study.
Adam S Lauring, Mark W Tenforde, James D Chappell, Manjusha Gaglani, Adit A Ginde, Tresa McNeal, Shekhar Ghamande, David J Douin, H Keipp Talbot, Jonathan D Casey, Nicholas M Mohr, Anne Zepeski, Nathan I Shapiro, Kevin W Gibbs, D Clark Files, David N Hager, Arber Shehu, Matthew E Prekker, Heidi L Erickson, Matthew C Exline, Michelle N Gong, Amira Mohamed, Nicholas J Johnson, Vasisht Srinivasan, Jay S Steingrub, Ithan D Peltan, Samuel M Brown, Emily T Martin, Arnold S Monto, Akram Khan, Catherine L Hough, Laurence W Busse, Caitlin C Ten Lohuis, Abhijit Duggal, Jennifer G Wilson, Alexandra June Gordon, Nida Qadir, Steven Y Chang, Christopher Mallow, Carolina Rivas, Hilary M Babcock, Jennie H Kwon, Natasha Halasa, Carlos G Grijalva, Todd W Rice, William B Stubblefield, Adrienne Baughman, Kelsey N Womack, Jillian P Rhoads, Christopher J Lindsell, Kimberly W Hart, Yuwei Zhu, Katherine Adams, Stephanie J Schrag, Samantha M Olson, Miwako Kobayashi, Jennifer R Verani, Manish M Patel, Wesley H Self, and
BMJ (Clinical research ed.) 2022 376e069761
Genomic Insights on Variation Underlying Capsule Expression in Meningococcal Carriage Isolates From University Students, United States, 2015-2016.
Melissa J Whaley, Jeni T Vuong, Nadav Topaz, How-Yi Chang, Jennifer Dolan Thomas, Laurel T Jenkins, Fang Hu, Susanna Schmink, Evelene Steward-Clark, Marsenia Mathis, Lorraine D Rodriguez-Rivera, Adam C Retchless, Sandeep J Joseph, Alexander Chen, Anna M Acosta, Lucy McNamara, Heidi M Soeters, Sarah Mbaeyi, Henju Marjuki, and Xin Wang
Frontiers in microbiology 2022 13815044
The Use of Whole-Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States.
Eric L Stevens, Heather A Carleton, Jennifer Beal, Glenn E Tillman, Rebecca L Lindsey, A C Lauer, Arthur Pightling, Karen G Jarvis, Andrea Ottesen, Padmini Ramachandran, Leslie Hintz, Lee S Katz, Jason P Folster, Jean M Whichard, Eija Trees, Ruth E Timme, Patrick McDermott, Beverly Wolpert, Michael Bazaco, Shaohua Zhao, Sabina Lindley, Beau B Bruce, Patricia M Griffin, Eric Brown, Marc Allard, Sandra Tallent, Kari Irvin, Maria Hoffmann, Matt Wise, Robert Tauxe, Peter Gerner-Smidt, Mustafa Simmons, Bonnie Kissler, Stephanie Defibaugh-Chavez, William Klimke, Richa Agarwala, James Lindsay, Kimberly Cook, Suelee Robbe Austerman, David Goldman, Sherri McGarry, Kis Robertson Hale, Uday Dessai, Steven M Musser, and Chris Braden
Journal of food protection 2022
Use of Serial Testing to Interrupt a SARS-CoV-2 Outbreak on a Hospital Medical Floor - Minnesota, October-December 2020.
Rajesh M Prabhu, Melanie J Firestone, Kari Bergman, Amanda Beaudoin, Tammy Hale, Alexandra Lorentz, Jacob Garfin, Xiong Wang, and Stacy Holzbauer
Infection control and hospital epidemiology 2022 1-16
Correlation between Phenotypic and In Silico Detection of Antimicrobial Resistance in Salmonella enterica in Canada Using Staramr.
Amrita Bharat, Aaron Petkau, Brent P Avery, Jessica C Chen, Jason P Folster, Carolee A Carson, Ashley Kearney, Celine Nadon, Philip Mabon, Jeffrey Thiessen, David C Alexander, Vanessa Allen, Sameh El Bailey, Sadjia Bekal, Greg J German, David Haldane, Linda Hoang, Linda Chui, Jessica Minion, George Zahariadis, Gary Van Domselaar, Richard J Reid-Smith, and Michael R Mulvey
Microorganisms 2022 10(2)
Invasive pneumococcal disease clusters disproportionally impact persons experiencing homelessness, injecting drug users, and the western United States.
Bernard Beall, Sopio Chochua, Zhongya Li, Theresa Tran, Jasmine Varghese, Lesley McGee, Yuan Li, and Benjamin Metcalf
The Journal of infectious diseases 2022
Bluetongue Research at a Crossroads: Modern Genomics Tools Can Pave the Way to New Insights.
Jennifer Kopanke, Molly Carpenter, Justin Lee, Kirsten Reed, Case Rodgers, Mollie Burton, Kierra Lovett, Joseph A Westrich, Erin McNulty, Emily McDermott, Carly Barbera, Sean Cavany, Jason R Rohr, T Alex Perkins, Candace K Mathiason, Mark Stenglein, and Christie Mayo
Annual review of animal biosciences 2022 10303-324
Molecular Characterization of Carbapenem-Resistant Enterobacterales Collected in the United States.
Maria Karlsson, Joseph D Lutgring, Uzma Ansari, Adrian Lawsin, Valerie Albrecht, Gillian McAllister, Jonathan Daniels, David Lonsway, Susannah McKay, Zintars Beldavs, Chris Bower, Ghinwa Dumyati, Annastasia Gross, Jesse Jacob, Sarah Janelle, Marion A Kainer, Ruth Lynfield, Erin C Phipps, Kyle Schutz, Lucy Wilson, Medora L Witwer, Sandra N Bulens, Maroya Spalding Walters, Nadezhda Duffy, Alexander J Kallen, Christopher A Elkins, and J Kamile Rasheed
Microbial drug resistance (Larchmont, N.Y.) 2022
Epidemiology of extended-spectrum β-lactamase-producing Enterobacterales in five US sites participating in the Emerging Infections Program, 2017.
Nadezhda Duffy, Maria Karlsson, Hannah E Reses, Davina Campbell, Jonathan Daniels, Richard A Stanton, Sarah J Janelle, Kyle Schutz, Wendy Bamberg, Paulina A Rebolledo, Chris Bower, Rebekah Blakney, Jesse T Jacob, Erin C Phipps, Kristina G Flores, Ghinwa Dumyati, Hannah Kopin, Rebecca Tsay, Marion A Kainer, Daniel Muleta, Benji Byrd-Warner, Julian E Grass, Joseph D Lutgring, J Kamile Rasheed, Christopher A Elkins, Shelley S Magill, and Isaac See
Infection control and hospital epidemiology 2022 1-9
Household transmission of SARS-CoV-2 Alpha variant - United States, 2021.
Marisa A P Donnelly, Meagan R Chuey, Raymond Soto, Noah G Schwartz, Victoria T Chu, Stacey L Konkle, Sadia Sleweon, Jasmine Ruffin, Dana L Haberling, Sarah Anne J Guagliardo, Robyn A Stoddard, Raydel D Anderson, Clint N Morgan, Rebecca Rossetti, David W McCormick, Reed Magleby, Sarah W Sheldon, Elizabeth A Dietrich, Anna Uehara, Adam C Retchless, Suxiang Tong, Jennifer M Folster, Jan Drobeniuc, Marla E Petway, Brett Austin, Sarah Stous, Eric McDonald, Seema Jain, Meghan M Hudziec, Ginger Stringer, Bernadette A Albanese, Sarah E Totten, J Erin Staples, Marie E Killerby, Laura Hughes, Almea Matanock, Mark Beatty, Jacqueline E Tate, Hannah L Kirking, Christopher H Hsu, and
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2022
Model-based analysis of tuberculosis genotype clusters in the United States reveals high degree of heterogeneity in transmission, and state-level differences across California, Florida, New York, and Texas.
Sourya Shrestha, Kathryn Winglee, Andrew Hill, Tambi Shaw, Jonathan Smith, J Steve Kammerer, Benjamin J Silk, Suzanne Marks, and David Dowdy
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2022
CYP2C8, CYP2C9 and CYP2C19 characterization using Next Generation Sequencing and Haplotype Analysis: A GeT-RM Collaborative Project.
Andrea Gaedigk, Erin C Boone, Steven E Scherer, Seung-Been Lee, Ibrahim Numanagic, Cenk Sahinalp, Joshua D Smith, Sean McGee, Aparna Radhakrishnan, Xiang Qin, Wendy Y Wang, Emily G Farrow, Nina Gonzaludo, Aaron L Halpern, Deborah A Nickerson, Neil A Miller, Victoria M Pratt, and Lisa V Kalman
The Journal of molecular diagnostics : JMD 2022
Mutation of Mycobacterium tuberculosis and Implications for Using Whole-Genome Sequencing for Investigating Recent Tuberculosis Transmission.
Kristin N Nelson, Sarah Talarico, Shameer Poonja, Clinton J McDaniel, Martin Cilnis, Alicia H Chang, Kala Raz, Wendy S Noboa, Lauren Cowan, Tambi Shaw, James Posey, and Benjamin J Silk
Frontiers in public health 2022 9790544
Evaluating a Cluster and the Overall Trend of Invasive Haemophilus influenzae Serotype b in Alaska 2005-2019.
Leisha D Nolen, Nadav Topaz, Karen Miernyk, Sara Bressler, Stephanie C Massay, Mary Geist, Tammy Zulz, and Rosalyn Singleton
The Pediatric infectious disease journal 2022
Outbreak of Multidrug-Resistant Salmonella Heidelberg Infections Linked to Dairy Calf Exposure, United States, 2015-2018.
Megin Nichols, Lauren Gollarza, Donald Sockett, Nicole Aulik, Elisabeth Patton, Louise K Francois Watkins, Kelly J Gambino-Shirley, Jason P Folster, Jessica C Chen, Kaitlin A Tagg, Gregory Sean Stapleton, Eija Trees, Zachary Ellison, Jason Lombard, Brenda Morningstar-Shaw, Linda Schlater, Lina Elbadawi, and Rachel Klos
Foodborne pathogens and disease 2022
Extensively Drug-Resistant Carbapenemase-Producing Pseudomonas aeruginosa and Medical Tourism from the United States to Mexico, 2018-2019.
Ian Kracalik, D Cal Ham, Gillian McAllister, Amanda R Smith, Maureen Vowles, Kelly Kauber, Melba Zambrano, Gretchen Rodriguez, Kelley Garner, Kaitlyn Chorbi, P Maureen Cassidy, Shannon McBee, Rhett J Stoney, Kathleen Moser, Margarita E Villarino, Oscar E Zazueta, Amelia Bhatnagar, Erisa Sula, Richard A Stanton, Allison C Brown, Alison L Halpin, Lauren Epstein, Maroya Spalding Walters, and
Emerging infectious diseases 2021 28(1) 51-61
Whole-Genome Sequencing to Identify Missed Rifampicin and Isoniazid Resistance Among Tuberculosis Isolates-Chennai, India, 2013-2016.
Sembulingam Tamilzhalagan, Sivakumar Shanmugam, Ashok Selvaraj, Sakthi Suba, Chittibabu Suganthi, Patrick K Moonan, Diya Surie, Mukesh Kumar Sathyanarayanan, Narayanan Shivaram Gomathi, Lavanya Jayabal, Kuldeep Singh Sachdeva, Sriram Selvaraju, Soumya Swaminathan, Srikanth Prasad Tripathy, Patricia J Hall, and Uma Devi Ranganathan
Frontiers in microbiology 2021 12720436
Comparative genomic analysis of clinical Candida glabrata isolates identifies multiple polymorphic loci that can improve existing multilocus sequence typing strategy.
A Arastehfar, M Marcet-Houben, F Daneshnia, S J Taj-Aldeen, D Batra, S R Lockhart, E Shor, T Gabaldón, and D S Perlin
Studies in mycology 2021 100100133
Evaluating whole-genome sequencing quality metrics for enteric pathogen outbreaks.
Darlene D Wagner, Heather A Carleton, Eija Trees, and Lee S Katz
PeerJ 2021 9e12446
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