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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Jun 02, 2023. (Total: 4301 publications since 2011)
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Records 1-30 (of 305 Records)
Query Trace: Whole genome sequencing[original query]
Genomic analysis of Clostridioides difficile in two regions of the United States reveals a diversity of strains and limited transmission.
Pecora N , Holzbauer S , Wang X , Gu Y , Taffner S , Hatwar T , Hardy D , Dziejman M , D'Heilly P , Pung K , Guh A , Qiu X , Gill S , Dumyati G .
J Infect Dis 2022 225 (1) 121-129
Outbreak of Acute Respiratory Illness Associated with Human Adenovirus Type 4 at the U.S. Coast Guard Academy, 2019.
Chu VT , Simon E , Lu X , Rockwell P , Abedi GR , Gardner C , Kujawski SA , Schneider E , Gentile M , Ramsey LA , Liu R , Jones S , Janik C , Siniscalchi A , Landry ML , Christopher J , Lindstrom S , Steiner S , Thomas D , Gerber SI , Biggs HM .
J Infect Dis 2022 225 (1) 55-64
O-antigen diversification masks identification of highly pathogenic shiga toxin-producing Escherichia coli O104:H4-like strains
Lang C , Fruth A , Campbell IW , Jenkins C , Smith P , Strockbine N , Weill FX , Nbel U , Grad YH , Waldor MK , Flieger A .
Microbiol Spectr 2023 e0098723
Characterization of a nonagglutinating toxigenic vibrio cholerae isolate
Gladney LM , Griswold T , Turnsek M , Im MS , Parsons MMB , Katz LS , Tarr CL , Lee CC .
Microbiol Spectr 2023 e0018223
Containment of a Verona integron-encoded metallo-beta-lactamase-producing pseudomonas aeruginosa outbreak associated with an acute care hospital sink-Tennessee, 2018-2020
Chan A , Thure K , Tobey K , Shugart A , Schmedes S , Burks JAth , Hardin H , Moore C , Carpenter T , Brooks S , Gable P , MoultonMeissner H , McAllister G , Lawsin A , LauferHalpin A , SpaldingWalters M , Keaton A .
Open Forum Infect Dis 2023 10 (5) ofad194
Use of high-resolution geospatial and genomic data to characterize recent tuberculosis transmission, Botswana
Baker CR , Barilar I , deAraujo LS , Rimoin AW , Parker DM , Boyd R , Tobias JL , Moonan PK , Click ES , Finlay A , Oeltmann JE , Minin VN , Modongo C , Zetola NM , Niemann S , Shin SS .
Emerg Infect Dis 2023 29 (5) 977-987
Evaluation of core genome and whole genome multilocus sequence typing schemes for Campylobacter jejuni and Campylobacter coli outbreak detection in the USA
Joseph LA , Griswold T , Vidyaprakash E , Im SB , Williams GM , Pouseele HA , Hise KB , Carleton HA .
Microb Genom 2023 9 (5)
An Overview of Foodborne Sample-Initiated Retrospective Outbreak Investigations and Interagency Collaboration in the United States.
Wellman A , Bazaco M , Blessington T , Pightling A , Dwarka A , Hintz L , Wise ME , Gieraltowski L , Conrad A , Nguyen TA , Hise K , Viazis S , Beal J .
J Food Prot 2023 100089
Patterns of within-host spread of Chlamydia trachomatis between vagina, endocervix and rectum revealed by comparative genomic analysis
Joseph SJ , Bommana S , Ziklo N , Kama M , Dean D , Read TD .
Front Microbiol 2023 14 1154664
Use of Serial Testing to Interrupt a SARS-CoV-2 Outbreak on a Hospital Medical Floor - Minnesota, October-December 2020.
Prabhu RM , Firestone MJ , Bergman KL , Beaudoin AL , Hale T , Lorentz AJ , Garfin J , Wang X , Holzbauer SM .
Infect Control Hosp Epidemiol 2023 44 (3) 427-432 type
An Outbreak Investigation of Vibrio parahaemolyticus Infections in the United States Linked to Crabmeat Imported from Venezuela: 2018.
Seelman SL , Whitney BM , Stokes EK , Elliot EL , Griswold T , Patel K , Bloodgood S , Jones JL , Cripe J , Cornell J , Luo Y , Williams DL , Boyle MM , Cahoon J , Brennan C , Wildey LM , Grover VM , Simonson S , Crosby AJ , Bazaco MC , Viazis S .
Foodborne Pathog Dis 2023
Tuberculosis Outbreak in a State Prison System - Washington, 2021-2022.
Stalter RM , Pecha M , Dov L , Miller D , Ghazal Z , Wortham J , Althomsons S , Deutsch-Feldman M , Stewart R , Felix D , Hsu S , Strick LB .
MMWR Morb Mortal Wkly Rep 2023 72 (12) 309-312
Fatal Human Rabies Infection with Suspected Host-mediated Failure of Post-Exposure Prophylaxis Following a Recognized Zoonotic Exposure-Minnesota, 2021.
Holzbauer SM , Schrodt CA , Prabhu RM , Asch-Kendrick RJ , Ireland M , Klumb C , Firestone MJ , Liu G , Harry K , Ritter JM , Levine MZ , Orciari LA , Wilkins K , Yager P , Gigante CM , Ellison JA , Zhao H , Niezgoda M , Li Y , Levis R , Scott D , Satheshkumar PS , Petersen BW , Rao AK , Bell WR , Bjerk SM , Forrest S , Gao W , Dasheiff R , Russell K , Pappas M , Kiefer J , Bickler W , Wiseman A , Jurantee J , Reichard RR , Smith KE , Lynfield R , Scheftel J , Wallace RM , Bonwitt J .
Clin Infect Dis 2023
First Known Report of mcr-Harboring Enterobacteriaceae in the Dominican Republic.
Perdomo A , Webb HE , Bugarel M , Friedman CR , FrancoisWatkins LK , Loneragan GH , Calle A .
Int J Environ Res Public Health 2023 20 (6)
Travel history among persons infected with SARS-CoV-2 variants of concern in the United States, December 2020-February 2021.
Dunajcik A , Haire K , Thomas JD , Moriarty LF , Springer Y , Villanueva JM , MacNeil A , Silk B , Nemhauser JB , Byrkit R , Taylor M , Queen K , Tong S , Lee J , Batra D , Paden C , Henderson T , Kunkes A , Ojo M , Firestone M , MartinWebb L , Freeland M , Brown CM , Williams T , Allen K , Kauerauf J , Wilson E , Jain S , McDonald E , Silver E , Stous S , Wadford D , Radcliffe R , Marriott C , Owes JP , Bart SM , Sosa LE , Oakeson K , Wodniak N , Shaffner J , Brown Q , Westergaard R , Salinas A , Hallyburton S , Ogale Y , Offutt-Powell T , Bonner K , Tubach S , VanHouten C , Hughes V , Reeb V , Galeazzi C , Khuntia S , McGee S , Hicks JT , DineshPatel D , Krueger A , Hughes S , Jeanty F , Wang JC , Lee EH , Assanah-Deane T , Tompkins M , Dougherty K , Naqvi O , Donahue M , Frederick J , Abdalhamid B , Powers AM , Anderson M .
PLOS Glob Public Health 2023 3 (3) e0001252 type
Whole-Genome Sequencing of Candida haemulonii species complex from Brazil and the United States: genetic diversity and antifungal susceptibility.
deBarrosRodrigues DK , Lockhart SR , Berkow EL , Gade L , Bonfietti LX , Gimenes VMF , Ruiz LS , Macioni MB , deSouzaCarvalhoMelhem M .
Med Mycol 2023
Emerging issues in probiotic safety: 2023 perspectives.
Merenstein D , Pot B , Leyer G , Ouwehand AC , Preidis GA , Elkins CA , Hill C , Lewis ZT , Shane AL , Zmora N , Petrova MI , Collado MC , Morelli L , Montoya GA , Szajewska H , Tancredi DJ , Sanders ME .
Gut Microbes 2023 15 (1) 2185034
Cronobacter sakazakii Infections in Two Infants Linked to Powdered Infant Formula and Breast Pump Equipment - United States, 2021 and 2022.
Haston JC , Miko S , Cope JR , McKeel H , Walters C , Joseph LA , Griswold T , Katz LS , Andjar AA , Tourdot L , Rounds J , Vagnone P , Medus C , Harris J , Geist R , Neises D , Wiggington A , Smith T , Im MS , Wheeler C , Smith P , Carleton HA , Lee CC .
MMWR Morb Mortal Wkly Rep 2023 72 (9) 223-226
Results from the second WHO external quality assessment for the molecular detection of respiratory syncytial virus, 2019-2020.
Thomas Williams, Sandra Jackson, Ian Barr, Shabana Bi, Jinal Bhiman, Joanna Ellis, Anne von Gottberg, Stephen Lindstrom, Teresa Peret, Sanjiv Rughooputh, Mariana Viegas, Siddhivinayak Hirve, Maria Zambon, Wenqing Zhang, , Ndongo Dia, Norosoa Razanazatovo, Ajaeb Dakhilalla M H Al-Nabet, Abdinasir Abubakar, Almiro Tivane, Amal Barakat, Amel Naguib, Ammar Aziz, Andrea Vicari, Ann Moen, Arunkumar Govindakarnavar, Aron Hall, Badarch Darmaa, Bastien Nathalie, Belinda Herring, Braulia C Caetano, Brett Whittaker, Elsa Baumeister, Emmanuel Nakouné, Erica Guthrie, Francis Inbanathan, Harish Nair, Harry Campbell, Herve A Kadjo, Hicham Oumzil, Jean-Michel Heraud, Joshua A Mott, Joyce Namulondo, Juliana Leite, Karen Nahapetyan, Lubna Al Ariqi, Mahmoud Hamad Ibraheem Gazo, Mandeep Chadha, Maria Pisareva, Marietjie Venter, Marilda M Siqueira, Mayan Lumandas, Mbayame Niang, Mona Albuaini, Muhammad Salman, Steve Oberste, Padmini Srikantiah, Patrick Tang, Paula Couto, Peter Smith, Peter Valentine Coyle, Philippe Dussart, Phuong Nam Nguyen, Pilailuk Akkapaiboon Okada, Pushpa Ranjan Wijesinghe, Reuben Samuel, Richard Brown, Richard Pebody, Rodrigo Fasce, Runa Jha, Stephen Lindstrom, Sue Gerber, Varsha Potdar, Xiaomin Dong, Yi Mo Deng .
Influenza and other respiratory viruses 2023 17(1) e13073
Investigation of SARS-CoV-2 Transmission in The Tabernacle Choir at Temple Square in the Context of Prevention Protocols, Utah, September-November 2021.
Lanier WA , Palmer DK , Willmore DK , Oakeson KF , Young EL , Nolen LD .
Public Health Rep 2023 333549231152198 type
Genomic description of human clinical Aspergillus fumigatus isolates, California, 2020.
Misas E , Deng JZ , Gold JAW , Gade L , Nunnally NS , Georgacopoulos O , Bentz M , Berkow EL , Litvintseva AP , Chiller TM , Klausner JD , Chow NA .
Med Mycol 2023
Epidemiology of invasive nontypeable Haemophilus influenzae disease-United States, 2008-2019.
Oliver SE , Rubis AB , Soeters HM , Reingold A , Barnes M , Petit S , Farley MM , Harrison LH , Como-Sabetti K , Khanlian SA , Wester R , Thomas A , Schaffner W , Marjuki H , Wang X , Hariri S .
Clin Infect Dis 2023
One Health Investigation of SARS-CoV-2 in People and Animals on Multiple Mink Farms in Utah.
Cossaboom CM , Wendling NM , Lewis NM , Rettler H , Harvey RR , Amman BR , Towner JS , Spengler JR , Erickson R , Burnett C , Young EL , Oakeson K , Carpenter A , Kainulainen MH , Chatterjee P , Flint M , Uehara A , Li Y , Zhang J , Kelleher A , Lynch B , Retchless AC , Tong S , Ahmad A , Bunkley P , Godino C , Herzegh O , Drobeniuc J , Rooney J , Taylor D , BartonBehravesh C .
Viruses 2022 15 (1) type
Probable vertical transmission of Alpha variant of concern (B.1.1.7) with evidence of SARS-CoV-2 infection in the syncytiotrophoblast, a case report.
Bullock HA , Fuchs E , Martines RB , Lush M , Bollweg B , Rutan A , Nelson A , Brisso M , Owusu-Ansah A , Sitzman C , Ketterl L , Timmons T , Lopez P , Mitchell E , McCutchen E , Figliomeni J , Iwen P , Uyeki TM , Reagan-Steiner S , Donahue M .
Front Med (Lausanne) 2022 9 1099408 type
Results from a test-and-treat study for influenza among residents of homeless shelters in King County, WA: A stepped-wedge cluster-randomized trial.
Rogers JH , Casto AM , Nwanne G , Link AC , Martinez MA , Nackviseth C , Wolf CR , Hughes JP , Englund JA , Sugg N , Uyeki TM , Han PD , Pfau B , Shendure J , Chu HY .
Influenza Other Respir Viruses 2023
Transmission potential of vaccinated and unvaccinated persons infected with the SARS-CoV-2 Delta variant in a federal prison, July-August 2021.
Salvatore PP , Lee CC , Sleweon S , McCormick DW , Nicolae L , Knipe K , Dixon T , Banta R , Ogle I , Young C , Dusseau C , Salmonson S , Ogden C , Godwin E , Ballom T , Rhodes T , Wynn NT , David E , Bessey TK , Kim G , Suppiah S , Tamin A , Harcourt JL , Sheth M , Lowe L , Browne H , Tate JE , Kirking HL , Hagan LM .
Vaccine 2022 type
Leptospira borgpetersenii serovar Hardjo and Leptospira santarosai serogroup Pyrogenes isolated from bovine dairy herds in Puerto Rico.
Hamond C , Dirsmith KL , LeCount K , Soltero FV , Rivera-Garcia S , Camp P , Anderson T , Hicks JA , Galloway R , Sutherland G , Schafer IJ , Goris MGA , vanderLinden H , Stuber T , Bayles DO , Schlater LK , Nally JE .
Front Vet Sci 2022 9 1025282
SARS-CoV-2 Genomic Diversity in Households Highlights the Challenges of Sequence-Based Transmission Inference.
Bendall EE , Paz-Bailey G , Santiago GA , Porucznik CA , Stanford JB , Stockwell MS , Duque J , Jeddy Z , Veguilla V , Major C , Rivera-Amill V , Rolfes MA , Dawood FS , Lauring AS .
mSphere 2022 7 (6) e0040022 type
Meningococcal disease in North America: Updates from the Global Meningococcal Initiative.
Asturias EJ , Bai X , Bettinger JA , Borrow R , Castillo DN , Caugant DA , Chacon GC , Dinleyici EC , Aviles GE , Garcia L , Glennie L , Harrison LH , Howie RL , Itsko M , Lucidarme J , Marin JEO , Marjuki H , McNamara LA , Mustapha MM , Robinson JL , Romeu B , Sadarangani M , Sez-Llorens X , Sfadi MAP , Stephens DS , Stuart JM , Taha MK , Tsang RSW , Vazquez J , DeWals P .
J Infect 2022 85 (6) 611-622 type
Association of mRNA Vaccination With Clinical and Virologic Features of COVID-19 Among US Essential and Frontline Workers.
Thompson MG , Yoon SK , Naleway AL , Meece J , Fabrizio TP , Caban-Martinez AJ , Burgess JL , Gaglani M , Olsho LEW , Bateman A , Lundgren J , Grant L , Phillips AL , Groom HC , Stefanski E , Solle NS , Ellingson K , Lutrick K , Dunnigan K , Wesley MG , Guenther K , Hunt A , Mak J , Hegmann KT , Kuntz JL , Bissonnette A , Hollister J , Rose S , Morrill TC , Respet K , Fowlkes AL , Thiese MS , Rivers P , Herring MK , Odean MJ , Yoo YM , Brunner M , Bedrick EJ , Fleary DE , Jones JT , Praggastis J , Romine J , Dickerson M , Khan SM , Lamberte JM , Beitel S , Webby RJ , Tyner HL .
JAMA 2022 328 (15) 1523-1533 type
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