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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)

CDC-Authored Genomics and Precision Health Publications Database


Last data update: May 02, 2025. (Total: 6670 publications)
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Records 1-30 (of 474 Records)
Query Trace: Whole genome sequencing[original query]
An International Outbreak Investigation of Salmonella Enteritidis Infections in the United States and Canada Linked to Peaches - 2020
Madad A , Vasser M , Viazis S , Neil KP , Kirchner M , Blessington T , Pightling A , Ingram DT , Grunenfelder L , Hughes S , Bell RL , Wang H , Nork B , Fernandez E , Gerrity K , Ladines E , Hise K , Hummadi O , Barnes A , Grant K , Lowe AM , Kearney A , Gieraltowski L , Salter M , Bazaco M , Carstens CK .
J Food Prot 2025 100519
Short-Read and Long-Read Whole Genome Sequencing for SARS-CoV-2 Variants Identification
Peng M , Davis ML , Bentz ML , Burgin A , Burroughs M , Padilla J , Nobles S , Unoarumhi Y , Tang K .
Viruses 2025 17 (4)
Complete genome of an mpox clade 1b virus from Kenya
Langat SK , Gathii K , Limbaso K , Roba A , Ndia M , Mutai B , Pilarowski G , Ochieng M , Juma B , Onyango C , Nyunja A , Okunga E , Ofula V , Oluniyi P , Chepkorir E , Lutomiah J , Herman-Roloff A , Lucchi N , Limo H , Langat D , Khamadi S , Kiiru J , Amoth P , Waitumbi J , Songok E .
Microbiol Resour Announc 2025 e0005025 type
Development of a culture-independent whole-genome sequencing of Nipah virus using the MinION Oxford Nanopore platform
Rahman MM , Miah M , Hossain ME , Rahim S , Sultana S , Satter SM , Islam A , Whitmer SLM , Epstein JH , Spiropoulou CF , Klena JD , Shirin T , Montgomery JM , Kaczmarek ME , Rahman MZ , Jahid IK .
Microbiol Spectr 2025 e0249224 type
Invasive Group A Streptococcal Infections in 10 US States
Gregory CJ , Okaro JO , Reingold A , Chai S , Herlihy R , Petit S , Farley MM , Harrison LH , Como-Sabetti K , Lynfield R , Snippes Vagnone P , Sosin D , Anderson BJ , Burzlaff K , Martin T , Thomas A , Schaffner W , Talbot HK , Beall B , Chochua S , Chung Y , Park S , Van Beneden C , Li Y , Schrag SJ .
Jama 2025 type
Environmental and Health Care Personnel Sampling and Unobserved Clostridium difficile Transmission in ICU
Keegan LT , Tanner W , Orleans B , Slayton RB , Jernigan JA , McDonald LC , Noble-Wang J , Leecaster M , Haroldsen C , Khader K , Toth DJA , O'Sullivan T , Samore MH , Brazelton W , Rubin M .
JAMA Netw Open 2025 8 (4) e252787
Brucella suis Infection in Cardiac Implantable Device of Man Exposed to Feral Swine Meat, Florida, USA
Rodriguez JA , Joseph C , Gupte AA , Ritter AS , Goel R , Panna M , Zincke D , Norris MH , Blackburn JK , Barfield CB , Frison DM , Lee PA , Stanek DR , Kharod GA , Saile E , Tiller RV , Negrón ME , Beatty NL .
Emerg Infect Dis 2025 31 (4) 795-798
Attribution of Salmonella enterica to Food Sources by Using Whole-Genome Sequencing Data
Rose EB , Steele MK , Tolar B , Pettengill J , Batz M , Bazaco M , Tameru B , Cui Z , Lindsey RL , Simmons M , Chen J , Posny D , Carleton H , Bruce BB .
Emerg Infect Dis 2025 31 (4) 783-790 type
Investigating two decades of Streptococcus pneumoniae bacteraemia in the Gelderland area, the Netherlands, using whole-genome sequencing
Sanches Ferreira AD , King AC , Wolters F , Wertheim HFL , Mulder B , Swanink CMA , van der Gaast-de Jongh CE , Arends DW , van Sorge NM , Schaars C , Hung HCH , Hawkins PA , McGee L , Bentley SD , Veening JW , de Jonge MI , Lo SW , Cremers AJH .
Microb Genom 2025 11 (3) type
Household Transmission and Genomic Diversity of Respiratory Syncytial Virus (RSV) in the United States, 2022-2023
Cox SN , Roychoudhury P , Frivold C , Acker Z , Babu TM , Boisvert CL , Carone M , Ehmen B , Englund JA , Feldstein LR , Gamboa L , Grindstaff S , Grioni HM , Han PD , Hoffman KL , Kim HG , Kuntz JL , Lo NK , Lockwood CM , McCaffrey K , Mularski RA , Hatchie TL , Reich SL , Schmidt MA , Smith N , Starita LM , Varga A , Yetz N , Naleway AL , Weil AA , Chu HY .
Clin Infect Dis 2025 type
Emergence and spread of clostridioides difficile isolates with reduced fidaxomicin susceptibility in an acute care hospital
Redmond SN , Cadnum JL , Jencson AL , Kaple CE , Wilson BM , Skinner AM , Gargis AS , Hwang M , Choi H , Chatterjee P , Jinadatha C , Donskey CJ .
Clin Infect Dis 2025
Salmonella serotypes in the genomic era: simplified Salmonella serotype interpretation from DNA sequence data
Deng X , Li S , Xu T , Zhou Z , Moore MM , Timme R , Zhao S , Lane C , Dinsmore BA , Weill F , Fields PI .
Appl Environ Microbiol 2025 e0260024 type
Phenotypic and genotypic characterization of Mycobacterium tuberculosis pyrazinamide resistance-India, 2018-2020
Tamilzhalagan S , Justin ES , Selvaraj A , Venkateswaran K , Sivakumar AK , Chittibabu S , McLaughlin HP , Moonan PK , Smith JP , Suba S , Sathya Narayanan MK , Ho CS , Kumar N , Tripathy SP , Shanmugam SK , Hall-Eidson PJ , Ranganathan UD .
Front Microbiol 2024 15 1515627 type
Study protocol for COVID-19 breakthrough infections and vaccine-induced immune response among a cohort of healthcare workers, Bangladesh
Hassan MZ , Basher AK , Rahman MZ , Bhuiyan TR , Chowdhury F , Hossain MK , Rahman A , Islam MN , MDuca L , Kaydos-Daniels SC , Dahl BA , Qadri F , Ortiz N .
PLoS One 2024 19 (12) e0316121
Genomic analysis of DS-1-like human rotavirus A strains uncovers genetic relatedness of NSP4 gene with animal strains in Manhiça District, Southern Mozambique
Manjate F , João ED , Mwangi P , Chirinda P , Mogotsi M , Garrine M , Messa A Jr , Vubil D , Nobela N , Kotloff K , Nataro JP , Nhampossa T , Acácio S , Weldegebriel G , Tate JE , Parashar U , Mwenda JM , Alonso PL , Cunha C , Nyaga M , Mandomando I .
Sci Rep 2024 14 (1) 30705 type
Molecular epidemiology of invasive group B Streptococcus in South Africa, 2019-2020
Ntozini B , Walaza S , Metcalf B , Hazelhurst S , de Gouveia L , Meiring S , Mogale D , Mtshali S , Ismail A , Ndlangisa K , Du Plessis M , Quan V , Chochua S , McGee L , von Gottberg A , Wolter N .
J Infect Dis 2024 type
Respiratory syncytial virus disease burden and nirsevimab effectiveness in young children from 2023-2024
Moline HL , Toepfer AP , Tannis A , Weinberg GA , Staat MA , Halasa NB , Boom JA , Klein EJ , Williams JV , Schuster JE , Goldstein L , McKeever ER , Kalman C , Paden C , Atherton L , Aggarwal M , Roychoudhury P , Piedra PA , Sahni LC , Stewart LS , Selvarangan R , Michaels MG , Schlaudecker EP , Szilagyi PG , Englund JA , Clopper BR , Thornburg NJ , Derado G , McMorrow ML , Dawood FS .
JAMA Pediatr 2024
Genomic analysis of the early COVID-19 pandemic in Haiti reveals Caribbean-specific variant dynamics
Mushegian A , Kreitman A , Nelson MI , Chung M , Mederos C , Roder A , Banakis S , Desormeaux AM , Jean Charles NL , Grant-Greene Y , Marseille S , Pierre K , Lafontant D , Boncy J , Journel I , Buteau J , Juin S , Ghedin E .
PLOS Glob Public Health 2024 4 (11) e0003536 type
primerForge: a Python program for identifying primer pairs capable of distinguishing groups of genomes from each other
Wirth JS , Katz LS , Williams GM , Chen JC .
J Open Source Softw 2024 9 (101) type
Investigating anthrax-associated virulence genes among archival and contemporary bacillus cereus group genomes
Sabin SJ , Beesley CA , Marston CK , Paisie TK , Gulvik CA , Sprenger GA , Gee JE , Traxler RM , Bell ME , McQuiston JR , Weiner ZP .
Pathogens 2024 13 (10) type
Epidemiological and clinical features of a large blastomycosis outbreak at a paper mill in Michigan
Hennessee I , Palmer S , Reik R , Miles-Jay A , Nawaz MY , Blankenship HM , Kramer R , Hughes A , Snyder M , Yin RL , Litvintseva AP , Parnell LA , Gade L , Chiller T , de Perio MA , Stobierski MG , McFadden J , Toda M .
Clin Infect Dis 2024 type
Genomic cluster formation among invasive group A streptococcal infections in the USA: a whole-genome sequencing and population-based surveillance study
Li Y , Rivers J , Mathis S , Li Z , Chochua S , Metcalf BJ , Beall B , McGee L .
Lancet Microbe 2024 100927 type
Rickettsia rickettsii subsp. californica subsp. nov., the etiologic agent of Pacific Coast tick fever
Paddock CD , Karpathy SE , Henry A , Ryle L , Hecht JA , Hacker JK , Padgett KA , Kjemtrup AM , Bullock H , Lane RS , Ladner JT .
J Infect Dis 2024 type
Sentinel Surveillance reveals phylogenetic diversity and detection of linear plasmids harboring vanA and optrA among enterococci collected in the United States
Kent AG , Spicer LM , Campbell D , Breaker E , McAllister GA , Ewing TO , Longo C , Balbuena R , Burroughs M , Burgin A , Padilla J , Johnson JK , Halpin AL , McKay SL , Rasheed JK , Elkins CA , Karlsson M , Lutgring JD , Gargis AS .
Antimicrob Agents Chemother 2024 e0059124 type
Genomic epidemiology of extrapulmonary nontuberculous mycobacteria isolates at emerging infections program sites - United States, 2019-2020
Masters TL , Toney NC , Ewing TO , McAllister G , Mathis MH , Grigg C , Magill SS , Jackson KA , Byram R , See I , Salfinger M , Barter D , Johnston H , Lynfield R , Vagnone PS , Tourdot L , Anderson BJ , Dumyati G , Pierce R , Lutgring JD , Gargis A , McKay S .
J Infect Dis 2024 type
Burkholderia multivorans infections associated with use of ice and water from ice machines for patient care activities - four hospitals, California and Colorado, 2020-2024
Vazquez Deida AA , Spicer KB , McNamara KX , Arduino MJ , Gable P , Halpin AL , Caverly LJ , LiPuma JJ , Bardach B , Mayle C , Baird SN , Czaja CA , Chinn R , Siegel JD , Perkins KM .
MMWR Morb Mortal Wkly Rep 2024 73 (39) 883-887 type
Whole-genome sequencing resolves biochemical misidentification of Neisseria species from urogenital specimens
Smith AC , Shrivastava A , Cartee JC , Bélanger M , Sharpe S , Lewis J , Budionno S , Gomez R , Khubbar MK , Pham CD , Gernert KM , Schmerer MW , Raphael BH , Learner ER , Kersh EN , Joseph SJ .
J Clin Microbiol 2024 e0070424 type
A multi-provincial outbreak of Salmonella Newport infections associated with red onions: A report of the largest Salmonella outbreak in Canada in over 20 years
Denich L , Cheng JM , Smith CR , Taylor M , Atkinson R , Boyd E , Chui L , Honish L , Isaac L , Kearney A , Liang JJ , Mah V , Manore AJW , McCormic ZD , Misfeldt C , Nadon C , Patel K , Sharma D , Todd A , Hexemer A .
Epidemiol Infect 2024 152 e106 type
An outbreak investigation of Salmonella Weltevreden illnesses in the United States linked to frozen precooked shrimp imported from India - 2021
Jenkins E , Cripe J , Whitney BM , Greenlee T , Schneider B , Nguyen TA , Pightling A , Manetas J , Abraham A , Fox T , Mickelsen N , Priddy C , McMullen S , Crosby A , Viazis S .
J Food Prot 2024 100360 type
Genetic diversity in Salmonella enterica in outbreaks of foodborne and zoonotic origin in the USA in 2006-2017
Trees E , Carleton HA , Folster JP , Gieraltowski L , Hise K , Leeper M , Nguyen TA , Poates A , Sabol A , Tagg KA , Tolar B , Vasser M , Webb HE , Wise M , Lindsey RL .
Microorganisms 2024 12 (8) type
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