CDC-Authored Genomics and Precision Health Publications Database

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Last data update: May 22, 2023. (Total: 4299 publications since 2011)

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Records 1-30 (of 98 Records)

Query Trace: Antimicrobial resistance[original query]
Genomic analysis of 1710 surveillance-based Neisseria gonorrhoeae isolates from the USA in 2019 identifies predominant strain types and chromosomal antimicrobial-resistance determinants Reimche JL , Clemons AA , Chivukula VL , Joseph SJ , Schmerer MW , Pham CD , Schlanger K , StCyr SB , Kersh EN , Gernert KM . Microb Genom 2023 9 (5)
Antimicrobial-resistant nontyphoidal Salmonella infection following international travel - United States, 2018-2019 Ford L , Shah HJ , Eikmeier D , Hanna S , Chen J , Tagg KA , Langley G , Payne DC , Plumb ID . J Infect Dis 2023
Salmonella Outbreaks Linked to Beef, United States, 2012-2019. Canning M , Birhane MG , Dewey-Mattia D , Lawinger H , Cote A , Gieraltowski L , Schwensohn C , Tagg KA , FrancoisWatkins LK , ParkRobyn M , Marshall KE . J Food Prot 2023 86 (5) 100071
Key features of pneumococcal isolates recovered in Central and Northwestern Russia in 2011-2018 determined through whole-genome sequencing. Egorova E , Kumar N , Gladstone RA , Urban Y , Voropaeva E , Chaplin AV , Rumiantseva E , Svistunova TS , Hawkins PA , Klugman KP , Breiman RF , McGee L , Bentley SD , Lo SW . Microb Genom 2022 8 (9)
Molecular characterization of circulating Salmonella Typhi strains in an urban informal settlement in Kenya. Ochieng C , Chen JC , Osita MP , Katz LS , Griswold T , Omballa V , Ng'eno E , Ouma A , Wamola N , Opiyo C , Achieng L , Munywoki PK , Hendriksen RS , Freeman M , Mikoleit M , Juma B , Bigogo G , Mintz E , Verani JR , Hunsperger E , Carleton HA . PLoS Negl Trop Dis 2022 16 (8) e0010704
Genomic Diversity, Antimicrobial Resistance, and Virulence Gene Profiles of Salmonella Serovar Kentucky Isolated from Humans, Food, and Animal Ceca Content Sources in the United States. Tate H , Hsu CH , Chen JC , Han J , Foley SL , Folster JP , FrancoisWatkins LK , Reynolds J , Tillman GE , Nyirabahizi E , Zhao S . Foodborne Pathog Dis 2022 19 (8) 509-521
Sequencing of Enteric Bacteria: Library Preparation Procedure Matters for Accurate Identification and Characterization. Poates A , Truong J , Lindsey R , Griswold T , Williams-Newkirk AJ , Carleton H , Trees E . Foodborne Pathog Dis 2022 19 (8) 569-578
Clinical and Genomic Epidemiology of mcr-9-Carrying Carbapenem-Resistant Enterobacterales Isolates in Metropolitan Atlanta, 2012 to 2017. Babiker A , Bower C , Lutgring JD , Petit RA3rd , Howard-Anderson J , Ansari U , McAllister G , Adamczyk M , Breaker E , Satola SW , Jacob JT , Woodworth MH . Microbiol Spectr 2022 10 (4) e0252221
Phylogenomic Comparison of Neisseria gonorrhoeae Causing Disseminated Gonococcal Infections and Uncomplicated Gonorrhea in Georgia, United States. Cartee JC , Joseph SJ , Weston E , Pham CD , Thomas JCth , Schlanger K , StCyr SB , Farley MM , Moore AE , Tunali AK , Cloud C , Raphael BH . Open Forum Infect Dis 2022 9 (7) ofac247
Distinct Streptococcus pneumoniae cause invasive disease in Papua New Guinea. Mellor KC , Lo S , Yoannes M , Michael A , Orami T , Greenhill AR , Breiman RF , Hawkins P , McGee L , Bentley SD , Ford RL , Lehmann D . Microb Genom 2022 8 (7)
Use of Large-Scale Genomics to Identify the Role of Animals and Foods as Potential Sources of Extraintestinal Pathogenic Escherichia coli That Cause Human Illness. Harrison L , Tyson GH , Strain E , Lindsey RL , Strockbine N , Ceric O , Fortenberry GZ , Harris B , Shaw S , Tillman G , Zhao S , Dessai U . Foods 2022 11 (13)
Genetic background of Cambodian pneumococcal carriage isolates following pneumococcal conjugate vaccine 13. Belman S , Soeng S , Soputhy C , Gladstone R , Hawkins PA , Breiman RF , McGee L , Bentley SD , Lo SW , Turner P . Microb Genom 2022 8 (6)
Continued Increase of Erythromycin- and Clindamycin-Nonsusceptibility among Invasive Group A Streptococci Driven by Genomic Clusters, USA, 2018-2019. Li Y , Rivers J , Mathis S , Li Z , McGee L , Chochua S , Metcalf BJ , Fleming-Dutra KE , Nanduri SA , Beall B . Clin Infect Dis 2022 76 (3) e1266-e1269
Analysis of Salmonella enterica Isolated from a Mixed-Use Watershed in Georgia, USA: Antimicrobial Resistance, Serotype Diversity, and Genetic Relatedness to Human Isolates. Cho S , Hiott LM , House SL , Woodley TA , McMillan EA , Sharma P , Barrett JB , Adams ES , Brandenburg JM , Hise KB , BatemanMcDonald JM , Ottesen EA , Lipp EK , Jackson CR , Frye JG . Appl Environ Microbiol 2022 88 (10) e0039322
Antimicrobial Susceptibility Survey of Invasive Haemophilus influenzae in the United States in 2016. Potts CC , Rodriguez-Rivera LD , Retchless AC , Buono SA , Chen AT , Marjuki H , Blain AE , Wang X . Microbiol Spectr 2022 10 (3) e0257921
Selective Whole-Genome Amplification as a Tool to Enrich Specimens with Low Treponema pallidum Genomic DNA Copies for Whole-Genome Sequencing. Thurlow CM , Joseph SJ , Ganova-Raeva L , Katz SS , Pereira L , Chen C , Debra A , Vilfort K , Workowski K , Cohen SE , Reno H , Sun Y , Burroughs M , Sheth M , Chi KH , Danavall D , Philip SS , Cao W , Kersh EN , Pillay A . mSphere 2022 7 (3) e0000922
Phylogenetic Structure and Comparative Genomics of Multi-National Invasive Haemophilus influenzae Serotype a Isolates. Topaz N , Tsang R , Deghmane AE , Claus H , Lm TT , Litt D , Bajanca-Lavado MP , Prez-Vzquez M , Vestrheim D , Giufr M , VanDerEnde A , Gaillot O , Kuch A , McElligott M , Taha MK , Wang X . Front Microbiol 2022 13 856884
Litter Commensal Bacteria Can Limit the Horizontal Gene Transfer of Antimicrobial Resistance to Salmonella in Chickens. Oladeinde A , Abdo Z , Zwirzitz B , Woyda R , Lakin SM , Press MO , Cox NA , Thomas JCth , Looft T , Rothrock MJJr , Zock G , PlumbleeLawrence J , Cudnik D , Ritz C , Aggrey SE , Liachko I , Grove JR , Wiersma C . Appl Environ Microbiol 2022 88 (9) e0251721
Antimicrobial Susceptibility Survey of Invasive Neisseria meningitidis, United States 2012-2016. Potts CC , Rodriguez-Rivera LD , Retchless AC , Hu F , Marjuki H , Blain AE , McNamara LA , Wang X . J Infect Dis 2022 225 (11) 1871-1875
Characterization of a Neisseria gonorrhoeae Ciprofloxacin panel for an antimicrobial resistant Isolate Bank. Liu H , Tang K , Pham CD , Schmerer M , Kersh EN , Raphael BH . PLoS One 2022 17 (3) e0264149
The Use of Whole-Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States. Stevens EL , Carleton HA , Beal J , Tillman GE , Lindsey RL , Lauer AC , Pightling A , Jarvis KG , Ottesen A , Ramachandran P , Hintz L , Katz LS , Folster JP , Whichard JM , Trees E , Timme RE , McDermott P , Wolpert B , Bazaco M , Zhao S , Lindley S , Bruce BB , Griffin PM , Brown E , Allard M , Tallent S , Irvin K , Hoffmann M , Wise M , Tauxe R , Gerner-Smidt P , Simmons M , Kissler B , Defibaugh-Chavez S , Klimke W , Agarwala R , Lindsay J , Cook K , Austerman SR , Goldman D , McGarry S , Hale KR , Dessai U , Musser SM , Braden C . J Food Prot 2022 85 (5) 755-772
Correlation between Phenotypic and In Silico Detection of Antimicrobial Resistance in Salmonella enterica in Canada Using Staramr. Bharat A , Petkau A , Avery BP , Chen J , Folster J , Carson CA , Kearney A , Nadon C , Mabon P , Thiessen J , Alexander DC , Allen V , ElBailey S , Bekal S , German GJ , Haldane D , Hoang L , Chui L , Minion J , Zahariadis G , VanDomselaar G , Reid-Smith RJ , Mulvey MR . Microorganisms 2022 10 (2)
Shotgun metagenome sequencing of a Sudanese toombak snuff tobacco: Genetic attributes of a high tobacco-specific nitrosamine (TSNA) containing smokeless tobacco product. Tyx RE , Rivera AJ , Stanfill SB , Zaatari GS , Watson CH . Lett Appl Microbiol 2021 74 (3) 444-451
A global repository of novel antimicrobial emergence events. Mendelsohn E , Daszak P , Ross N , White AM , Whiting K , Basaraba C , WatsonMadubuonwu B , Johnson E , Dualeh M , Matson Z , Dattaray S , Ezeokoli N , KirshenbaumLieberman M , Kotcher J , Maher S , Zambrana-Torrelio C . F1000Res 2021 9 1320
Genotypic and Phenotypic Characterization of Antimicrobial Resistance Profiles in Non-typhoidal Salmonella enterica Strains Isolated From Cambodian Informal Markets. Schwan CL , Lomonaco S , Bastos LM , Cook PW , Maher J , Trinetta V , Bhullar M , Phebus RK , Gragg S , Kastner J , Vipham JL . Front Microbiol 2021 12 711472
Genomic surveillance of invasive Streptococcus pneumoniae isolates in the period pre-PCV10 and post-PCV10 introduction in Brazil. Almeida SCG , Lo SW , Hawkins PA , Gladstone RA , Cassiolato AP , Klugman KP , Breiman RF , Bentley SD , McGee L , Brandileone MC . Microb Genom 2021 7 (10)
Population genetic structure, serotype distribution and antibiotic resistance of Streptococcus pneumoniae causing invasive disease in children in Argentina. Gagetti P , Lo SW , Hawkins PA , Gladstone RA , Regueira M , Faccone D , Sireva-ArgentinaGroup , Klugman KP , Breiman RF , McGee L , Bentley SD , Corso A . Microb Genom 2021 7 (9)
Streptococcus pneumoniae serotypes that frequently colonise the human nasopharynx are common recipients of penicillin-binding protein gene fragments from Streptococcus mitis. Kalizang'oma A , Chaguza C , Gori A , Davison C , Beleza S , Antonio M , Beall B , Goldblatt D , Kwambana-Adams B , Bentley SD , Heyderman RS . Microb Genom 2021 7 (9)
Escaping the fate of Sisyphus: assessing resistome hybridization baits for antimicrobial resistance gene capture. Beaudry MS , Thomas JC , Baptista RP , Sullivan AH , Norfolk W , Devault A , Enk J , Kieran TJ , Rhodes OEJr , Perry-Dow KA , Rose LJ , Bayona-Vsquez NJ , Oladeinde A , Lipp EK , Sanchez S , Glenn TC . Environ Microbiol 2021 23 (12) 7523-7537
Assessment of Genetic Stability During Serial In Vitro Passage and In Vivo Carriage. Sabol A , Joung YJ , VanTubbergen C , Ale J , Ribot EM , Trees E . Foodborne Pathog Dis 2021 18 (12) 894-901