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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Dec 02, 2024. (Total: 6432 publications)
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Records 1-30 (of 161 Records)
Query Trace: Antimicrobial resistance[original query]
Canine multidrug-resistant pseudomonas aeruginosa cases linked to human artificial tears-related outbreak
Price ER , McDermott D , Sherman A , Kelley L , Mehr J , Greeley R , Cole SD .
Emerg Infect Dis 2024 30 (12) 2689-2691 type
Characterization of carbapenem-resistant Enterobacterales and Pseudomonas aeruginosa carrying multiple carbapenemase genes-Antimicrobial Resistance Laboratory Network, 2018-2022
Sabour S , Harrington KRV , Martinson E , Bhatnagar AS , Huang JY , Duffy D , Bantle K , Lutgring JD , Karlsson M , Baca S .
J Clin Microbiol 2024 e0122024 type
Genomic cluster formation among invasive group A streptococcal infections in the USA: a whole-genome sequencing and population-based surveillance study
Li Y , Rivers J , Mathis S , Li Z , Chochua S , Metcalf BJ , Beall B , McGee L .
Lancet Microbe 2024 100927 type
Emergence and evolution of mosaic penA-60 and penA-237 alleles in a Neisseria gonorrhoeae core genogroup that was historically susceptible to extended spectrum cephalosporins
Thomas Iv JC , Cartee JC , Hebrank K , St Cyr SB , Schlanger K , Raphael BH , Kersh EN , Joseph SJ .
Front Microbiol 2024 15 1401303 type
Sentinel Surveillance reveals phylogenetic diversity and detection of linear plasmids harboring vanA and optrA among enterococci collected in the United States
Kent AG , Spicer LM , Campbell D , Breaker E , McAllister GA , Ewing TO , Longo C , Balbuena R , Burroughs M , Burgin A , Padilla J , Johnson JK , Halpin AL , McKay SL , Rasheed JK , Elkins CA , Karlsson M , Lutgring JD , Gargis AS .
Antimicrob Agents Chemother 2024 e0059124 type
Genomic epidemiology of extrapulmonary nontuberculous mycobacteria isolates at emerging infections program sites - United States, 2019-2020
Masters TL , Toney NC , Ewing TO , McAllister G , Mathis MH , Grigg C , Magill SS , Jackson KA , Byram R , See I , Salfinger M , Barter D , Johnston H , Lynfield R , Vagnone PS , Tourdot L , Anderson BJ , Dumyati G , Pierce R , Lutgring JD , Gargis A , McKay S .
J Infect Dis 2024 type
Machine learning to attribute the source of Campylobacter infections in the United States: a retrospective analysis of national surveillance data
Pascoe B , Futcher G , Pensar J , Bayliss SC , Mourkas E , Calland JK , Hitchings MD , Joseph LA , Lane CG , Greenlee T , Arning N , Wilson DJ , Jolley KA , Corander J , Maiden MCJ , Parker CT , Cooper KK , Rose EB , Hiett K , Bruce BB , Sheppard SK .
J Infect 2024 106265 type
Genetic diversity in Salmonella enterica in outbreaks of foodborne and zoonotic origin in the USA in 2006-2017
Trees E , Carleton HA , Folster JP , Gieraltowski L , Hise K , Leeper M , Nguyen TA , Poates A , Sabol A , Tagg KA , Tolar B , Vasser M , Webb HE , Wise M , Lindsey RL .
Microorganisms 2024 12 (8) type
Azithromycin-resistant mph(A)-positive Salmonella enterica serovar Typhi in the United States
Tagg KA , Kim JY , Henderson B , Birhane MG , Snyder C , Boutwell C , Lyo A , Li L , Weinstein E , Mercado Y , Peñil-Celis A , Mikoleit M , Folster JP , Watkins LKF .
J Glob Antimicrob Resist 2024 type
Neisseria gonorrhoeae ST-1901 in Rio de Janeiro from 2006 to 2022: phylogeny and antimicrobial resistance evolution of a well-succeeded pathogen
de Medeiros RC , Barros Dos Santos KT , Costa-Lourenço APR , Skaf LB , Mercadante AM , Rosa MHB , Fracalanzza SEL , Ferreira ALP , Reimche JL , Gernert KM , Kersh EN , Bonelli RR .
Int J Antimicrob Agents 2024 107299 type
Mobile genetic elements define the non-random structure of the Salmonella enterica serovar Typhi pangenome
Peñil-Celis A , Tagg KA , Webb HE , Redondo-Salvo S , Francois Watkins L , Vielva L , Griffin C , Kim JY , Folster JP , Garcillan-Barcia MP , de la Cruz F .
mSystems 2024 e0036524
Geographical migration and fitness dynamics of Streptococcus pneumoniae
Belman S , Lefrancq N , Nzenze S , Downs S , du Plessis M , Lo SW , McGee L , Madhi SA , von Gottberg A , Bentley SD , Salje H .
Nature 2024 631 (8020) 386-392 type
A one health approach for monitoring antimicrobial resistance: developing a national freshwater pilot effort
Franklin AM , Weller DL , Durso LM , Bagley M , Davis BC , Frye JG , Grim CJ , Ibekwe AM , Jahne MA , Keely SP , Kraft AL , McConn BR , Mitchell RM , Ottesen AR , Sharma M , Strain EA , Tadesse DA , Tate H , Wells JE , Williams CF , Cook KL , Kabera C , McDermott PF , Garland JL .
Front Water 2024 6 type
Outbreak of multidrug-resistant Salmonella infections in people linked to pig ear pet treats, United States, 2015–2019: results of a multistate investigation
Nichols M , Stapleton GS , Rotstein DS , Gollarza L , Adams J , Caidi H , Chen J , Hodges A , Glover M , Peloquin S , Payne L , Norris A , DeLancey S , Donovan D , Dietrich S , Glaspie S , McWilliams K , Burgess E , Holben B , Pietrzen K , Benko S , Feldpausch E , Orel S , Neises D , Kline KE , Tobin B , Caron G , Viveiros B , Miller A , Turner C , Holmes-Talbot K , Mank L , Nishimura C , Nguyen TN , Hale S , Francois Watkins LK .
Lancet Reg Health - Am 2024 34 type
Genetic basis of clarithromycin resistance in Bacillus anthracis
Maxson T , Overholt WA , Chivukula V , Caban-Figueroa V , Kongphet-Tran T , Medina Cordoba LK , Cherney B , Rishishwar L , Conley A , Sue D .
Microbiol Spectr 2024 e0418023 type
Hormonal steroids induce multidrug resistance and stress response genes in Neisseria gonorrhoeae by binding to MtrR
Hooks GM , Ayala JC , Holley CL , Dhulipala V , Beggs GA , Perfect JR , Schumacher MA , Shafer WM , Brennan RG .
Nat Commun 2024 15 (1) 1153 type
A genetic locus in Elizabethkingia anophelis associated with elevated vancomycin resistance and multiple antibiotic reduced susceptibility
Johnson WL , Gupta SK , Maharjan S , Morgenstein RM , Nicholson AC , McQuiston JR , Gustafson JE .
Antibiotics (Basel) 2024 13 (1) type
Multistate nontyphoidal Salmonella and Shiga toxin-producing Escherichia coli outbreaks linked to international travel - United States, 2017-2020
Habrun CA , Birhane MG , François Watkins LK , Benedict K , Bottichio L , Nemechek K , Tolar B , Schroeder MN , Chen JC , Caidi H , Robyn M , Nichols M .
Epidemiol Infect 2024 1-33 type
Differentiation of hypervirulent and classical Klebsiella pneumoniae with acquired drug resistance
Russo TA , Alvarado CL , Davies CJ , Drayer ZJ , Carlino-MacDonald U , Hutson A , Luo TL , Martin MJ , Corey BW , Moser KA , Rasheed JK , Halpin AL , McGann PT , Lebreton F .
mBio 2024 e0286723 type
Descriptive analysis of targeted carbapenemase genes and antibiotic susceptibility profiles among carbapenem-resistant Acinetobacter baumannii tested in the Antimicrobial Resistance Laboratory Network-United States, 2017-2020
Sabour S , Bantle K , Bhatnagar A , Huang JY , Biggs A , Bodnar J , Dale JL , Gleason R , Klein L , Lasure M , Lee R , Nazarian E , Schneider E , Smith L , Snippes Vagnone P , Therrien M , Tran M , Valley A , Wang C , Young EL , Lutgring JD , Brown AC .
Microbiol Spectr 2024 e0282823 type
Antimicrobial resistance in multistate outbreaks of nontyphoidal Salmonella infections linked to animal contact-United States, 2015-2018
Frey E , Stapleton GS , Nichols MC , Gollarza LM , Birhane M , Chen JC , McCullough A , Carleton HA , Trees E , Hise KB , Tolar B , Francois Watkins L .
J Clin Microbiol 2023 e0098123 type
Evidence review and recommendations for the implementation of genomics for antimicrobial resistance surveillance: reports from an international expert group
Baker KS , Jauneikaite E , Nunn JG , Midega JT , Atun R , Holt KE , Walia K , Howden BP , Tate H , Okeke IN , Carattoli A , Hsu LY , Hopkins KL , Muloi DM , Wheeler NE , Aanensen DM , Mason LCE , Rodgus J , Hendriksen RS , Essack SY , Egyir B , Halpin AL , MacCannell DR , Campos J , Srikantiah P , Feasey NA , Peacock SJ .
Lancet Microbe 2023 4 (12) e1035-e1039 type
Genomics for antimicrobial resistance surveillance to support infection prevention and control in health-care facilities
Jauneikaite E , Baker KS , Nunn JG , Midega JT , Hsu LY , Singh SR , Halpin AL , Hopkins KL , Price JR , Srikantiah P , Egyir B , Okeke IN , Holt KE , Peacock SJ , Feasey NA .
Lancet Microbe 2023 4 (12) e1040-e1046 type
Comparison of carbapenem-susceptible and carbapenem-resistant Enterobacterales at nine sites in the USA, 2013-2016: a resource for antimicrobial resistance investigators
Lutgring JD , Kent AG , Bowers JR , Jasso-Selles DE , Albrecht V , Stevens VA , Pfeiffer A , Barnes R , Engelthaler DM , Johnson JK , Gargis AS , Rasheed JK , Limbago BM , Elkins CA , Karlsson M , Halpin AL .
Microb Genom 2023 9 (11) type
Genomic epidemiology of Streptococcus pneumoniae serotype 16F lineages
Mokaya J , Mellor KC , Murray GGR , Kalizang'oma A , Lekhuleni C , Zar HJ , Nicol MP , McGee L , Bentley SD , Lo SW , Dube F .
Microb Genom 2023 9 (11) type
Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes
Carey ME , Dyson ZA , Ingle DJ , Amir A , Aworh MK , Chattaway MA , Chew KL , Crump JA , Feasey NA , Howden BP , Keddy KH , Maes M , Parry CM , Van Puyvelde S , Webb HE , Afolayan AO , Alexander AP , Anandan S , Andrews JR , Ashton PM , Basnyat B , Bavdekar A , Bogoch II , Clemens JD , da Silva KE , De A , de Ligt J , Diaz Guevara PL , Dolecek C , Dutta S , Ehlers MM , Francois Watkins L , Garrett DO , Godbole G , Gordon MA , Greenhill AR , Griffin C , Gupta M , Hendriksen RS , Heyderman RS , Hooda Y , Hormazabal JC , Ikhimiukor OO , Iqbal J , Jacob JJ , Jenkins C , Jinka DR , John J , Kang G , Kanteh A , Kapil A , Karkey A , Kariuki S , Kingsley RA , Koshy RM , Lauer AC , Levine MM , Lingegowda RK , Luby SP , Mackenzie GA , Mashe T , Msefula C , Mutreja A , Nagaraj G , Nagaraj S , Nair S , Naseri TK , Nimarota-Brown S , Njamkepo E , Okeke IN , Perumal SPB , Pollard AJ , Pragasam AK , Qadri F , Qamar FN , Rahman SIA , Rambocus SD , Rasko DA , Ray P , Robins-Browne R , Rongsen-Chandola T , Rutanga JP , Saha SK , Saha S , Saigal K , Sajib MSI , Seidman JC , Shakya J , Shamanna V , Shastri J , Shrestha R , Sia S , Sikorski MJ , Singh A , Smith AM , Tagg KA , Tamrakar D , Tanmoy AM , Thomas M , Thomas MS , Thomsen R , Thomson NR , Tupua S , Vaidya K , Valcanis M , Veeraraghavan B , Weill FX , Wright J , Dougan G , Argimón S , Keane JA , Aanensen DM , Baker S , Holt KE .
Elife 2023 12 type
Enterobacterales draft genome sequences: 15 historical (1998-2004) and 30 contemporary (2015-2016) clinical isolates from Pakistan
Crawford MA , Lascols C , Lomonaco S , Timme RE , Fisher DJ , Anderson K , Hodge DR , Morse SA , Pillai SP , Sharma SK , Khan E , Allard MW , Hughes MA .
Microbiol Resour Announc 2023 12 (9) e0016323
Population structure and antimicrobial resistance patterns of Salmonella Typhi and Paratyphi A amid a phased municipal vaccination campaign in Navi Mumbai, India
da Silva KE , Date K , Hirani N , LeBoa C , Jayaprasad N , Borhade P , Warren J , Shimpi R , Hoffman SA , Mikoleit M , Bhatnagar P , Cao Y , Haldar P , Harvey P , Zhang C , Daruwalla S , Dharmapalan D , Gavhane J , Joshi S , Rai R , Rathod V , Shetty K , Warrier DS , Yadav S , Chakraborty D , Bahl S , Katkar A , Kunwar A , Yewale V , Dutta S , Luby SP , Andrews JR .
mBio 2023 14 (4) e0117923 type
Investigation of multidrug-resistant plasmids from carbapenemase-producing Klebsiella pneumoniae clinical isolates from Pakistan
Lascols C , Cherney B , Conley AB , Rishishwar L , Crawford MA , Morse SA , Fisher DJ , Anderson K , Hodge DR , Pillai SP , Hughes MA , Khan E , Sue D .
Front Microbiol 2023 14 1192097
A global genomic analysis of Salmonella Concord reveals lineages with high antimicrobial resistance in Ethiopia
Cuypers WL , Meysman P , Weill FX , Hendriksen RS , Beyene G , Wain J , Nair S , Chattaway MA , Perez-Sepulveda BM , Ceyssens PJ , de Block T , Lee WWY , Pardos de la Gandara M , Kornschober C , Moran-Gilad J , Veldman KT , Cormican M , Torpdahl M , Fields PI , Černý T , Hardy L , Tack B , Mellor KC , Thomson N , Dougan G , Deborggraeve S , Jacobs J , Laukens K , Van Puyvelde S .
Nat Commun 2023 14 (1) 3517 type
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