CDC-Authored Genomics and Precision Health Publications Database

---

Last data update: Jan 21, 2025. (Total: 6495 publications)

All Cancer Diabetes Economic Environmental Equity FHH HLBS ID Implementation ND PGx PI Rare RCH dataset

Filtered By: Select to fine-tune your search Year Journal

Records 1-7 (of 7 Records)

Query Trace: den Bakker HC[original query]
Fasten: a toolkit for streaming operations on FASTQ files Katz LS , Phan J , den Bakker HC . J Open Source Softw 2024 9 (94) 6030
SneakerNet: A modular quality assurance and quality check workflow for primary genomic and metagenomic read data. Griswold T , Kapsak C , Chen JC , den Bakker HC , Williams G , Kelley A , Vidyaprakash E , Katz LS . J Open Source Softw 2021 6 (60)
Complete Genome Sequence of a Serotype 7 Listeria monocytogenes Strain, FSL R9-0915. Peters TL , Hudson LK , Bryan DW , Song Y , den Bakker HC , Kucerova Z , Denes TG . Microbiol Resour Announc 2021 10 (1)
SeqSero2: rapid and improved Salmonella serotype determination using whole genome sequencing data. Zhang S , Den-Bakker HC , Li S , Chen J , Dinsmore BA , Lane C , Lauer AC , Fields PI , Deng X . Appl Environ Microbiol 2019 85 (23)
Complete Genome Sequences of Four Salmonella enterica Strains (Including Those of Serotypes Montevideo, Mbandaka, and Lubbock) Isolated from Peripheral Lymph Nodes of Healthy Cattle. Bugarel M , Cook PW , den Bakker HC , Harhay D , Nightingale KK , Loneragan GH . Microbiol Resour Announc 2019 8 (2)
Evolutionary Relationships of Outbreak-associated Listeria monocytogenes Strains of Serotypes 1/2a and 1/2b Determined by Whole Genome Sequencing. Bergholz TM , den Bakker HC , Katz LS , Silk BJ , Jackson KA , Kucerova Z , Joseph LA , Turnsek M , Gladney LM , Halpin JL , Xavier K , Gossack J , Ward TJ , Frace M , Tarr CL . Appl Environ Microbiol 2015 82 (3) 928-38
Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages. Deng X , Desai PT , den Bakker HC , Mikoleit M , Tolar B , Trees E , Hendriksen RS , Frye JG , Porwollik S , Weimer BC , Wiedmann M , Weinstock GM , Fields PI , McClelland M . Emerg Infect Dis 2014 20 (9) 1481-9