CDC-Authored Genomics and Precision Health Publications Database
Last data update: Dec 02, 2024. (Total: 6432 publications)
| Query Trace: da Silva J[original query] |
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| The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotype 1 in North, Central, and East Africa
Orf GS , Bbosa N , Berg MG , Downing R , Weiss SL , Ssemwanga D , Ssekagiri A , Ashraf S , da Silva Filipe A , Kiiza R , Buule J , Namagembe HS , Nabirye SE , Kayiwa J , Deng LL , Wani G , Maror JA , Baguma A , Mogga JJH , Kamili S , Thomson EC , Kaleebu P , Cloherty GA . Infect Genet Evol 2024 105667 
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| HIV-1 pretreatment and acquired antiretroviral drug resistance before tenofovir/ /lamivudine /dolutegravir (TLD) roll-out in Mozambique
Ismael N , Gemusse H , Mahumane I , Laurindo O , Magul C , Baxter C , Wilkinson E , Hofstra LM , Wagar N , Bila D , Mabunda N , da Silva J , Oliveira T , Raizes E , Preiser W , Manuel P , Ramos A , Vúbil A . BMC Infect Dis 2024 24 (1) 748
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| Sources and prevalence of Cyclospora cayetanensis in southeastern U.S. Growing environments
Kahler AM , Hofstetter J , Arrowood M , Peterson A , Jacobson D , Barratt J , Luiz Biscaia Ribeiro da Silva A , Rodrigues C , Mattioli MC . J Food Prot 2024 100309
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| Molecular and Phenotypic Characterization of a Highly Evolved Type 2 Vaccine-Derived Poliovirus Isolated from Seawater in Brazil, 2014.
Cassemiro KM , Burlandy FM , Barbosa MR , Chen Q , Jorba J , Hachich EM , Sato MI , Burns CC , da Silva EE . PLoS One 2016 11 (3) e0152251 |
| Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes
Carey ME , Dyson ZA , Ingle DJ , Amir A , Aworh MK , Chattaway MA , Chew KL , Crump JA , Feasey NA , Howden BP , Keddy KH , Maes M , Parry CM , Van Puyvelde S , Webb HE , Afolayan AO , Alexander AP , Anandan S , Andrews JR , Ashton PM , Basnyat B , Bavdekar A , Bogoch II , Clemens JD , da Silva KE , De A , de Ligt J , Diaz Guevara PL , Dolecek C , Dutta S , Ehlers MM , Francois Watkins L , Garrett DO , Godbole G , Gordon MA , Greenhill AR , Griffin C , Gupta M , Hendriksen RS , Heyderman RS , Hooda Y , Hormazabal JC , Ikhimiukor OO , Iqbal J , Jacob JJ , Jenkins C , Jinka DR , John J , Kang G , Kanteh A , Kapil A , Karkey A , Kariuki S , Kingsley RA , Koshy RM , Lauer AC , Levine MM , Lingegowda RK , Luby SP , Mackenzie GA , Mashe T , Msefula C , Mutreja A , Nagaraj G , Nagaraj S , Nair S , Naseri TK , Nimarota-Brown S , Njamkepo E , Okeke IN , Perumal SPB , Pollard AJ , Pragasam AK , Qadri F , Qamar FN , Rahman SIA , Rambocus SD , Rasko DA , Ray P , Robins-Browne R , Rongsen-Chandola T , Rutanga JP , Saha SK , Saha S , Saigal K , Sajib MSI , Seidman JC , Shakya J , Shamanna V , Shastri J , Shrestha R , Sia S , Sikorski MJ , Singh A , Smith AM , Tagg KA , Tamrakar D , Tanmoy AM , Thomas M , Thomas MS , Thomsen R , Thomson NR , Tupua S , Vaidya K , Valcanis M , Veeraraghavan B , Weill FX , Wright J , Dougan G , Argimón S , Keane JA , Aanensen DM , Baker S , Holt KE . Elife 2023 12
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| Population structure and antimicrobial resistance patterns of Salmonella Typhi and Paratyphi A amid a phased municipal vaccination campaign in Navi Mumbai, India
da Silva KE , Date K , Hirani N , LeBoa C , Jayaprasad N , Borhade P , Warren J , Shimpi R , Hoffman SA , Mikoleit M , Bhatnagar P , Cao Y , Haldar P , Harvey P , Zhang C , Daruwalla S , Dharmapalan D , Gavhane J , Joshi S , Rai R , Rathod V , Shetty K , Warrier DS , Yadav S , Chakraborty D , Bahl S , Katkar A , Kunwar A , Yewale V , Dutta S , Luby SP , Andrews JR . mBio 2023 14 (4) e0117923
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| Targeted and whole-genome sequencing reveal a north-south divide in P. falciparum drug resistance markers and genetic structure in Mozambique
da Silva C , Boene S , Datta D , Rovira-Vallbona E , Aranda-Díaz A , Cisteró P , Hathaway N , Tessema S , Chidimatembue A , Matambisso G , Nhama A , Macete E , Pujol A , Nhamussua L , Galatas B , Guinovart C , Enosse S , De Carvalho E , Rogier E , Plucinski MM , Colborn J , Zulliger R , Saifodine A , Alonso PL , Candrinho B , Greenhouse B , Aide P , Saute F , Mayor A . Commun Biol 2023 6 (1) 619 |
| Model-based estimation of transmissibility and reinfection of SARS-CoV-2 P.1 variant.
Coutinho RM , Marquitti FMD , Ferreira LS , Borges ME , da Silva RLP , Canton O , Portella TP , Poloni S , Franco C , Plucinski MM , Lessa FC , da Silva AAM , Kraenkel RA , de Sousa Mascena Veras MA , Prado PI . Commun Med (Lond) 2021 1 48 |
| Drug resistance and use of long-acting ART.
daSilva J , Siedner M , McCluskey S , Chandiwana N , Venter F , Raizes E . Lancet HIV 2022 9 (6) e374-e375
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| Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package.
Griffiths EJ , Timme RE , Mendes CI , Page AJ , Alikhan NF , Fornika D , Maguire F , Campos J , Park D , Olawoye IB , Oluniyi PE , Anderson D , Christoffels A , da Silva AG , Cameron R , Dooley D , Katz LS , Black A , Karsch-Mizrachi I , Barrett T , Johnston A , Connor TR , Nicholls SM , Witney AA , Tyson GH , Tausch SH , Raphenya AR , Alcock B , Aanensen DM , Hodcroft E , Hsiao WWL , Vasconcelos ATR , MacCannell DR . Gigascience 2022 11
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| Monitoring emerging HIV drug resistance in sub-Saharan Africa in the era of dolutegravir.
da Silva J , Pals S , Chang J , Hackett S , Godfrey C , Raizes E . J Infect Dis 2021 225 (3) 364-366
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| Epidemiologic, immunologic, and virus characteristics in patients with paired SARS-CoV-2 serology and reverse transcription polymerase chain reaction testing.
Shragai T , Smith-Jeffcoat SE , Koh M , Schechter MC , Rebolledo PA , Kasinathan V , Wang Y , Hoffman A , Miller H , Tejada-Strop A , Jain S , Tamin A , Harcourt JL , Thornburg NJ , Wong P , Medrzycki M , Folster JM , Semenova V , Steward-Clark E , Drobenuic J , Biedron C , Stewart RJ , da Silva J , Kirking HL , Tate JE . J Infect Dis 2021 225 (2) 229-237 |
| Predictors at admission of mechanical ventilation and death in an observational cohort of adults hospitalized with COVID-19.
Jackson BR , Gold JAW , Natarajan P , Rossow J , Neblett Fanfair R , da Silva J , Wong KK , Browning SD , Bamrah Morris S , Rogers-Brown J , Hernandez-Romieu AC , Szablewski CM , Oosmanally N , Tobin-D'Angelo M , Drenzek C , Murphy DJ , Hollberg J , Blum JM , Jansen R , Wright DW , SeweSll WM , Owens JD , Lefkove B , Brown FW , Burton DC , Uyeki TM , Bialek SR , Patel PR , Bruce BB . Clin Infect Dis 2020 73 (11) e4141-e4151 |
| High prevalence of Hepatitis C Virus infection among people who use crack cocaine in an important international drug trafficking route in Central-West Region Brazil.
Castro VOL , Kamili S , Forbi JC , Stabile AC , da Silva EF , do Valle Leone de Oliveira SM , de Carvalho PRT , Puga MAM , Tanaka TSO , do Lago BV , Ibanhes ML , Araujo A , Tejada-Strop A , Lin Y , Xia GL , Sue A , Teles SA , Motta-Castro ARC . Infect Genet Evol 2020 85 104488
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| Molecular typing of Cyclospora cayetanensis in produce and clinical samples using targeted enrichment of complete mitochondrial genomes and next-generation sequencing.
Cinar HN , Gopinath G , Murphy HR , Almeria S , Durigan M , Choi D , Jang A , Kim E , Kim R , Choi S , Lee J , Shin Y , Lee J , Qvarnstrom Y , Benedict TK , Bishop HS , da Silva A . Parasit Vectors 2020 13 (1) 122 |
| Zika Virus Surveillance at the Human-Animal Interface in West-Central Brazil, 2017-2018.
Pauvolid-Correa A , Goncalves Dias H , Marina Siqueira Maia L , Porfirio G , Oliveira Morgado T , Sabino-Santos G , Helena Santa Rita P , Teixeira Gomes Barreto W , Carvalho de Macedo G , Marinho Torres J , Arruda Gimenes Nantes W , Martins Santos F , Oliveira de Assis W , Castro Rucco A , Mamoru Dos Santos Yui R , Bosco Vilela Campos J , Rodrigues Leandro ESilva R , da Silva Ferreira R , Aparecido da Silva Neves N , Charlles de Souza Costa M , Ramos Martins L , Marques de Souza E , Dos Santos Carvalho M , Goncalves Lima M , de Cassia Goncalves Alves F , Humberto Guimaraes Riquelme-Junior L , Luiz Batista Figueiro L , Fernandes Gomes de Santana M , Gustavo Rodrigues Oliveira Santos L , Serra Medeiros S , Lopes Seino L , Hime Miranda E , Henrique Rezende Linhares J , de Oliveira Santos V , Almeida da Silva S , Araujo Lucio K , Silva Gomes V , de Araujo Oliveira A , Dos Santos Silva J , de Almeida Marques W , Schafer Marques M , Junior Franca de Barros J , Campos L , Couto-Lima D , Coutinho Netto C , Strussmann C , Panella N , Hannon E , Cristina de Macedo B , Ramos de Almeida J , Ramos Ribeiro K , Carolina Barros de Castro M , Pratta Campos L , Paula Rosa Dos Santos A , Marino de Souza I , de Assis Bianchini M , Helena Ramiro Correa S , Ordones Baptista Luz R , Dos Santos Vieira A , Maria de Oliveira Pinto L , Azeredo E , Tadeu Moraes Figueiredo L , Augusto Fonseca Alencar J , Maria Barbosa de Lima S , Miraglia Herrera H , Dezengrini Shlessarenko R , Barreto Dos Santos F , Maria Bispo de Filippis A , Salyer S , Montgomery J , Komar N . Viruses 2019 11 (12)
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| Development of a World Health Organization International Reference Panel for different genotypes of hepatitis E virus for nucleic acid amplification testing.
Baylis SA , Hanschmann KO , Matsubayashi K , Sakata H , Roque-Afonso AM , Kaiser M , Corman VM , Kamili S , Aggarwal R , Trehanpati N , Gartner T , Thomson EC , Davis CA , da Silva Filipe A , Abdelrahman TT , Blumel J , Terao E . J Clin Virol 2019 119 60-67 |
| Molecular detection of Cyclospora cayetanensis in human stool specimens using UNEX-based DNA extraction and real-time PCR.
Qvarnstrom Y , Benedict T , Marcet PL , Wiegand RE , Herwaldt BL , da Silva AJ . Parasitology 2017 145 (7) 1-6
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| Interlaboratory validation of an improved method for detection of Cyclospora cayetanensis in produce using a real-time PCR assay.
Murphy HR , Cinar HN , Gopinath G , Noe KE , Chatman LD , Miranda NE , Wetherington JH , Neal-McKinney J , Pires GS , Sachs E , Stanya KJ , Johnson CL , Nascimento FS , Santin M , Molokin A , Samadpour M , Janagama H , Kahler A , Miller C , da Silva AJ . Food Microbiol 2018 69 170-178 |
| Impact of Larger Sputum Volume on Xpert(®) MTB/RIF Assay Detection of Mycobacterium tuberculosis in Smear-Negative Individuals with Suspected Tuberculosis.
Badal-Faesen S , Firnhaber C , Kendall MA , Wu X , Grinsztejn B , Escada Rods , Fernandez M , Hogg E , Sanne I , Johnson P , Alland D , Mazurek GH , Benator DA , Luetkemeyer AF . J Clin Med 2017 6 (8) |
| Patients with Primary Immunodeficiencies Are a Reservoir of Poliovirus and a Risk to Polio Eradication.
Aghamohammadi A , Abolhassani H , Kutukculer N , Wassilak SG , Pallansch MA , Kluglein S , Quinn J , Sutter RW , Wang X , Sanal O , Latysheva T , Ikinciogullari A , Bernatowska E , Tuzankina IA , Costa-Carvalho BT , Franco JL , Somech R , Karakoc-Aydiner E , Singh S , Bezrodnik L , Espinosa-Rosales FJ , Shcherbina A , Lau YL , Nonoyama S , Modell F , Modell V , Ozen A , Berlin A , Chouikha A , Partida-Gaytán A , Kiykim A , Prakash C , Suri D , Ayvaz DC , Peláez D , da Silva EE , Deordieva E , Pérez-Sánchez EE , Ulusoy E , Dogu F , Seminario G , Cuzcanci H , Triki H , Shimizu H , Tezcan I , Ben-Mustapha I , Sun J , Mazzucchelli JTL , Orrego JC , Pac M , Bolkov M , Giraldo M , Belhaj-Hmida N , Mekki N , Kuzmenko N , Karaca NE , Rezaei N , Diop OM , Baris S , Chan SM , Shahmahmoodi S , Haskologlu S , Ying W , Wang Y , Barbouche MR , McKinlay MA . Front Immunol 2017 8 685 |
| Comparative sequence analysis of Cyclospora cayetanensis apicoplast genomes originating from diverse geographical regions.
Cinar HN , Qvarnstrom Y , Wei-Pridgeon Y , Li W , Nascimento FS , Arrowood MJ , Murphy HR , Jang A , Kim E , Kim R , da Silva A , Gopinath GR . Parasit Vectors 2016 9 (1) 611 |
| Detection and Differentiation of Leishmania spp. in Clinical Specimens Using a SYBR Green-Based Real-Time PCR Assay.
de Almeida ME , Koru O , Steurer F , Herwaldt BL , da Silva AJ . J Clin Microbiol 2016 55 (1) 281-290 |
| Evaluation of library preparation methods for Illumina next generation sequencing of small amounts of DNA from foodborne parasites.
Nascimento FS , Wei-Pridgeon Y , Arrowood MJ , Moss D , da Silva AJ , Talundzic E , Qvarnstrom Y . J Microbiol Methods 2016 130 23-26 |
| Real-Time Polymerase Chain Reaction Detection of Angiostrongylus cantonensis DNA in Cerebrospinal Fluid from Patients with Eosinophilic Meningitis.
Qvarnstrom Y , Xayavong M , Aramburu da Silva AC , Park SY , Whelen AC , Calimlim PS , Sciulli RH , Honda SA , Higa K , Kitsutani P , Chea N , Heng S , Johnson S , Graeff-Teixeira C , Fox LM , da Silva AJ . Am J Trop Med Hyg 2015 94 (1) 176-81
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| Performance of a Real Time PCR for leishmaniasis diagnosis using a L. (L.) infantum hypothetical protein as target in canine samples.
Colombo FA , Pereira-Chioccola VL , da Silva Meira C , Motoie G , Gava R , Hiramoto RM , de Almeida ME , da Silva AJ , Cutolo AA , Menz I . Exp Parasitol 2015 157 156-62 |
| Good laboratory practice for clinical next-generation sequencing informatics pipelines.
Gargis AS , Kalman L , Bick DP , da Silva C , Dimmock DP , Funke BH , Gowrisankar S , Hegde MR , Kulkarni S , Mason CE , Nagarajan R , Voelkerding KV , Worthey EA , Aziz N , Barnes J , Bennett SF , Bisht H , Church DM , Dimitrova Z , Gargis SR , Hafez N , Hambuch T , Hyland FC , Luna RA , MacCannell D , Mann T , McCluskey MR , McDaniel TK , Ganova-Raeva LM , Rehm HL , Reid J , Campo DS , Resnick RB , Ridge PG , Salit ML , Skums P , Wong LJ , Zehnbauer BA , Zook JM , Lubin IM . Nat Biotechnol 2015 33 (7) 689-93 |
| A linear mitochondrial genome of Cyclospora cayetanensis (Eimeriidae, Eucoccidiorida, Coccidiasina, Apicomplexa) suggests the ancestral start position within mitochondrial genomes of eimeriid coccidia.
Ogedengbe ME , Qvarnstrom Y , da Silva AJ , Arrowood MJ , Barta JR . Int J Parasitol 2015 45 (6) 361-5 |
| Using mitochondrial genome sequences to track the origin of imported Plasmodium vivax infections diagnosed in the United States.
Rodrigues PT , Alves JM , Santamaria AM , Calzada JE , Xayavong M , Parise M , da Silva AJ , Ferreira MU . Am J Trop Med Hyg 2014 90 (6) 1102-8 |
| The current status of laboratory diagnosis of Angiostrongylus cantonensis infections in humans using serologic and molecular methods.
Wilkins PP , Qvarnstrom Y , Whelen AC , Saucier C , da Silva AJ , Eamsobhana P . Hawaii J Med Public Health 2013 2 55-57 |
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