CDC-Authored Genomics and Precision Health Publications Database
Last data update: Sep 25, 2023. (Total: 4424 publications since 2011)
| Query Trace: Switzer W[original query] |
|---|
| Transmitted HIV drug resistance in Bulgaria occurs in clusters of individuals from different transmission groups and various subtypes (2012-2020)
Alexiev I , Shankar A , Pan Y , Grigorova L , Partsuneva A , Dimitrova R , Gancheva A , Kostadinova A , Elenkov I , Yancheva N , Grozdeva R , Strashimirov D , Stoycheva M , Baltadzhiev I , Doichinova T , Pekova L , Kosmidis M , Emilova R , Nikolova M , Switzer WM . Viruses 2023 15 (4) |
| MicrobeTrace: Retooling molecular epidemiology for rapid public health response.
Campbell EM , Boyles A , Shankar A , Kim J , Knyazev S , Cintron R , Switzer WM . PLoS Comput Biol 2021 17 (9) e1009300 
|
| Evolutionary history of orangutan plasmodia revealed by phylogenetic analysis of complete mtDNA genomes and new biogeographical divergence dating calibration models.
Reid MJC , Switzer WM , Alonso SK , Lowenberger CA , Schillaci MA . Am J Primatol 2021 84 e23298 |
| Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction.
Knyazev S , Tsyvina V , Shankar A , Melnyk A , Artyomenko A , Malygina T , Porozov YB , Campbell EM , Switzer WM , Skums P , Mangul S , Zelikovsky A . Nucleic Acids Res 2021 49 (17) e102 |
| The CDC HIV Outbreak Coordination Unit: Developing a Standardized, Collaborative Approach to HIV Outbreak Assessment and Response.
Oster AM , France AM , McClung RP , Buchacz K , Lyss SB , Peters PJ , Weidle PJ , Switzer WM , Phillip SAJr , Brooks JT , Hernandez AL . Public Health Rep 2021 137 (4) 333549211018678 |
| Increasing Capacity to Detect Clusters of Rapid HIV Transmission in Varied Populations-United States.
Oster AM , Panneer N , Lyss SB , McClung RP , Watson M , Saduvala N , Ocfemia MCB , Linley L , Switzer WM , Wertheim JO , Campbell E , Hernandez AL , France AM . Viruses 2021 13 (4) |
| CD4 receptor diversity represents an ancient protection mechanism against primate lentiviruses.
Russell RM , Bibollet-Ruche F , Liu W , Sherrill-Mix S , Li Y , Connell J , Loy DE , Trimboli S , Smith AG , Avitto AN , Gondim MVP , Plenderleith LJ , Wetzel KS , Collman RG , Ayouba A , Esteban A , Peeters M , Kohler WJ , Miller RA , Franois-Souquiere S , Switzer WM , Hirsch VM , Marx PA , Piel AK , Stewart FA , Georgiev AV , Sommer V , Bertolani P , Hart JA , Hart TB , Shaw GM , Sharp PM , Hahn BH . Proc Natl Acad Sci U S A 2021 118 (13) |
| Human T-cell lymphotropic virus type 1 transmission dynamics in rural villages in the democratic republic of the congo with high nonhuman primate exposure.
Halbrook M , Gadoth A , Shankar A , Zheng H , Campbell EM , Hoff NA , Muyembe JJ , Wemakoy EO , Rimoin AW , Switzer WM . PLoS Negl Trop Dis 2021 15 (1) e0008923 |
| Molecular Epidemiological Analysis of the Origin and Transmission Dynamics of the HIV-1 CRF01_AE Sub-Epidemic in Bulgaria.
Alexiev I , Campbell EM , Knyazev S , Pan Y , Grigorova L , Dimitrova R , Partsuneva A , Gancheva A , Kostadinova A , Seguin-Devaux C , Elenkov I , Yancheva N , Switzer WM . Viruses 2021 13 (1) |
| Identification of an HIV-1 and Neurosyphilis Cluster in Vermont.
Singh D , Switzer WM , Belcher R , Daltry D , Read JS . Clin Infect Dis 2020 73 (9) e3244-e3249 |
| Koala retrovirus diversity, transmissibility, and disease associations.
Zheng H , Pan Y , Tang S , Pye GW , Stadler CK , Vogelnest L , Herrin KV , Rideout BA , Switzer WM . Retrovirology 2020 17 (1) 34 |
| Employing Molecular Phylodynamic Methods to Identify and Forecast HIV Transmission Clusters in Public Health Settings: A Qualitative Study.
Rich SN , Richards VL , Mavian CN , Switzer WM , RifeMagalis B , Poschman K , Geary S , Broadway SE , Bennett SB , Blanton J , Leitner T , Boatwright JL , Stetten NE , Cook RL , Spencer EC , Salemi M , Prosperi M . Viruses 2020 12 (9) |
| Human Immunodeficiency Virus (HIV) Outbreak Investigation Among Persons Who Inject Drugs in Massachusetts Enhanced by HIV Sequence Data.
Tumpney M , John B , Panneer N , McClung RP , Campbell EM , Roosevelt K , DeMaria A , Buchacz K , Switzer WM , Lyss S , Cranston K . J Infect Dis 2020 222 S259-s267 |
| Complete Genome Sequence of a Baboon Simian Foamy Virus Isolated from an Infected Human.
Shankar A , Shanmugam V , Switzer WM . Microbiol Resour Announc 2020 9 (27) |
| Molecular Epidemiology of the HIV-1 Subtype B Sub-Epidemic in Bulgaria.
Alexiev I , Campbell EM , Knyazev S , Pan Y , Grigorova L , Dimitrova R , Partsuneva A , Gancheva A , Kostadinova A , Seguin-Devaux C , Switzer WM . Viruses 2020 12 (4) |
| Using an Established Outbreak Response Plan and Molecular Epidemiology Methods in an HIV Transmission Cluster Investigation, Tennessee, January-June 2017.
Sizemore L , Fill MM , Mathieson SA , Black J , Brantley M , Cooper K , Garrett J , Switzer WM , Peters PJ , Wester C . Public Health Rep 2020 135 (3) 33354920915445 |
| Phylodynamic Analysis Complements Partner Services by Identifying Acute and Unreported HIV Transmission.
Campbell EM , Patala A , Shankar A , Li JF , Johnson JA , Westheimer E , Gay CL , Cohen SE , Switzer WM , Peters PJ . Viruses 2020 12 (2) |
| Natural selection favoring more transmissible HIV detected in United States molecular transmission network.
Wertheim JO , Oster AM , Switzer WM , Zhang C , Panneer N , Campbell E , Saduvala N , Johnson JA , Heneine W . Nat Commun 2019 10 (1) 5788 |
| Opioid Use Fueling HIV Transmission in an Urban Setting: An Outbreak of HIV Infection Among People Who Inject Drugs-Massachusetts, 2015-2018.
Alpren C , Dawson EL , John B , Cranston K , Panneer N , Fukuda HD , Roosevelt K , Klevens RM , Bryant J , Peters PJ , Lyss SB , Switzer W , Burrage A , Murray A , Agnew-Brune C , Stiles T , McClung P , Campbell EM , Breen C , Randall LM , Dasgupta S , Onofrey S , Bixler D , Hampton K , Jaeger JL , Hsu KK , Adih W , Callis B , Goldman LR , Danner SP , Jia H , Tumpney M , Board A , Brown C , DeMaria A Jr , Buchacz K . Am J Public Health 2019 110 (1) e1-e8 |
| Molecular Analysis of the Complete Genome of a Simian Foamy Virus Infecting Hylobates pileatus (pileated gibbon) Reveals Ancient Co-Evolution with Lesser Apes.
Shankar A , Sibley SD , Goldberg TL , Switzer WM . Viruses 2019 11 (7) |
| Genome-wide patterns of gene expression in a wild primate indicate species-specific mechanisms associated with tolerance to natural simian immunodeficiency virus infection.
Simons ND , Eick GN , Ruiz-Lopez MJ , Hyeroba D , Omeja PA , Weny G , Chapman CA , Goldberg TL , Zheng H , Shankar A , Switzer WM , Frost SDW , Jones JH , Sterner KN , Ting N . Genome Biol Evol 2019 11 (6) 1630-1643 |
| Clinical and Molecular Features of Feline Foamy Virus and Feline Leukemia Virus Co-Infection in Naturally-Infected Cats.
Cavalcante LTF , Muniz CP , Jia H , Augusto AM , Troccoli F , Medeiros SO , Dias CGA , Switzer WM , Soares MA , Santos AF . Viruses 2018 10 (12) |
| Maintenance and reappearance of extremely divergent intra-host HIV-1 variants.
Wertheim JO , Oster AM , Murrell B , Saduvala N , Heneine W , Switzer WM , Johnson JA . Virus Evol 2018 4 (2) vey030 |
| A large HCV transmission network enabled a fast-growing HIV outbreak in rural Indiana, 2015.
Ramachandran S , Thai H , Forbi JC , Galang RR , Dimitrova Z , Xia GL , Lin Y , Punkova LT , Pontones PR , Gentry J , Blosser SJ , Lovchik J , Switzer WM , Teshale E , Peters P , Ward J , Khudyakov Y . EBioMedicine 2018 37 374-381 |
| Identifying Clusters of Recent and Rapid HIV Transmission Through Analysis of Molecular Surveillance Data.
Oster AM , France AM , Panneer N , BanezOcfemia MC , Campbell E , Dasgupta S , Switzer WM , Wertheim JO , Hernandez AL . J Acquir Immune Defic Syndr 2018 79 (5) 543-550 |
| Detailed Transmission Network Analysis of a Large Opiate-Driven Outbreak of HIV Infection in the United States.
Campbell Ellsworth M, Jia Hongwei, Shankar Anupama, Hanson Debra, Luo Wei, Masciotra Silvina, Owen S Michele, Oster Alexandra M, Galang Romeo R, Spiller Michael W, Blosser Sara J, Chapman Erika, Roseberry Jeremy C, Gentry Jessica, Pontones Pamela, Duwve Joan, Peyrani Paula, Kagan Ron M, Whitcomb Jeannette M, Peters Philip J, Heneine Walid, Brooks John T, Switzer William M. The Journal of infectious diseases 2017 Oct . The Journal of infectious diseases 2017 Oct |
| Zoonotic infection of Brazilian primate workers with New World simian foamy virus.
Muniz Cláudia P, Cavalcante Liliane T F, Jia Hongwei, Zheng HaoQiang, Tang Shaohua, Augusto Anderson M, Pissinatti Alcides, Fedullo Luiz P, Santos André F, Soares Marcelo A, Switzer William M. PloS one 2017 12(9) e0184502 . PloS one 2017 12(9) e0184502 |
| A non-invasive specimen collection method and a novel simian foamy virus (SFV) DNA quantification assay in New World primates reveal aspects of tissue tropism and improved SFV detection.
Muniz Cláudia P, Zheng HaoQiang, Jia Hongwei, Cavalcante Liliane T F, Augusto Anderson M, Fedullo Luiz P, Pissinatti Alcides, Soares Marcelo A, Switzer William M, Santos André F.PloS one 2017 (9) e0184251 . PloS one 2017 (9) e0184251 |
| Transmission fitness of drug-resistant HIV revealed in a surveillance system transmission network.
Wertheim Joel O, Oster Alexandra M, Johnson Jeffrey A, Switzer William M, Saduvala Neeraja, Hernandez Angela L, Hall H Irene, Heneine Walid. Virus evolution 2017 Jan 3(1) vex008 . Virus evolution 2017 Jan 3(1) vex008 |
| Increasing HIV-1 subtype diversity in seven states, United States, 2006-2013.
Oster Alexandra M, Switzer William M, Hernandez Angela L, Saduvala Neeraja, Wertheim Joel O, Nwangwu-Ike Ndidi, Ocfemia M Cheryl, Campbell Ellsworth, Hall H Irene.Annals of epidemiology 2017 Feb . Annals of epidemiology 2017 Feb |
- Page last reviewed:Feb 1, 2023
- Page last updated:Sep 25, 2023
- Content source: