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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Sep 30, 2024. (Total: 6327 publications)
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Records 1-30 (of 33 Records)
Query Trace: Strockbine N[original query]
Global phylogeography and evolutionary history of Shigella dysenteriae type 1.
Njamkepo E , Fawal N , Tran-Dien A , Hawkey J , Strockbine N , Jenkins C , Talukder KA , Bercion R , Kuleshov K , Kolínská R , Russell JE , Kaftyreva L , Accou-Demartin M , Karas A , Vandenberg O , Mather AE , Mason CJ , Page AJ , Ramamurthy T , Bizet C , Gamian A , Carle I , Sow AG , Bouchier C , Wester AL , Lejay-Collin M , Fonkoua MC , Le Hello S , Blaser MJ , Jernberg C , Ruckly C , Mérens A , Page AL , Aslett M , Roggentin P , Fruth A , Denamur E , Venkatesan M , Bercovier H , Bodhidatta L , Chiou CS , Clermont D , Colonna B , Egorova S , Pazhani GP , Ezernitchi AV , Guigon G , Harris SR , Izumiya H , Korzeniowska-Kowal A , Lutyńska A , Gouali M , Grimont F , Langendorf C , Marejková M , Peterson LA , Perez-Perez G , Ngandjio A , Podkolzin A , Souche E , Makarova M , Shipulin GA , Ye C , Žemličková H , Herpay M , Grimont PA , Parkhill J , Sansonetti P , Holt KE , Brisse S , Thomson NR , Weill FX .
Nat Microbiol 2016 1 16027
O-antigen diversification masks identification of highly pathogenic shiga toxin-producing Escherichia coli O104:H4-like strains
Lang C , Fruth A , Campbell IW , Jenkins C , Smith P , Strockbine N , Weill FX , Nübel U , Grad YH , Waldor MK , Flieger A .
Microbiol Spectr 2023 11 (3) e0098723
Epidemiology of enteroaggregative, enteropathogenic, and shiga toxin-producing escherichia coli among children aged <5 years in 3 countries in Africa, 2015-2018: Vaccine Impact on Diarrhea in Africa (VIDA) Study
Ochieng JB , Powell H , Sugerman CE , Omore R , Ogwel B , Juma J , Awuor AO , Sow SO , Sanogo D , Onwuchekwa U , Keita AM , Traoré A , Badji H , Hossain MJ , Jones JCM , Kasumba IN , Nasrin D , Roose A , Liang Y , Jamka LP , Antonio M , Platts-Mills JA , Liu J , Houpt ER , Mintz ED , Hunsperger E , Onyango CO , Strockbine N , Widdowson MA , Verani JR , Tennant SM , Kotloff KL .
Clin Infect Dis 2023 76 S77-s86
Use of Large-Scale Genomics to Identify the Role of Animals and Foods as Potential Sources of Extraintestinal Pathogenic Escherichia coli That Cause Human Illness.
Harrison L , Tyson GH , Strain E , Lindsey RL , Strockbine N , Ceric O , Fortenberry GZ , Harris B , Shaw S , Tillman G , Zhao S , Dessai U .
Foods 2022 11 (13) type
Agritourism and Kidding Season: A Large Outbreak of Human Shiga Toxin-Producing Escherichia coli O157 (STEC O157) Infections Linked to a Goat Dairy Farm-Connecticut, 2016.
Nichols MC , Gacek P , Phan Q , Gambino-Shirley KJ , Gollarza LM , Schroeder MN , Mercante A , Mullins J , Blackstock A , Laughlin ME , Olson SM , Pizzo E , Nguyen TN , Mank L , Holmes-Talbot K , McNutt A , Noel D , Muyombwe A , Razeq JH , Lis MJ , Sherman B , Kasacek W , Whitlock L , Strockbine N , Martin H , Vidyaprakash E , McCormack P , Cartter M .
Front Vet Sci 2021 8 744055 type
Delayed lactose utilization among Shiga toxin-producing Escherichia coli of serogroup O121.
Gill A , McMahon T , Dussault F , Jinneman K , Lindsey R , Martin H , Stoneburg D , Strockbine N , Wetherington J , Feng P .
Food Microbiol 2022 102 103903
PacBio Genome Sequences of Eight Escherichia albertii Strains Isolated from Humans in the United States.
Lindsey RL , Rowe LA , Batra D , Smith P , Strockbine NA .
Microbiol Resour Announc 2019 8 (9) type
PCR-based method for S. flexneri serotyping: International Multicenter Validation.
Brengi SP , Sun Q , Bolanos H , Duarte F , Jenkins C , Pichel M , Shahnaij M , Sowers EG , Strockbine N , Talukder KA , Derado G , Vinas MR , Kam KM , Xu J .
J Clin Microbiol 2019 57 (4) type
Interlaboratory Evaluation of the U.S. Food and Drug Administration Escherichia coli Identification Microarray for Profiling Shiga Toxin-Producing Escherichia coli.
Patel IR , Gangiredla J , Lacher DW , Mammel MK , Bagi L , Baranzoni GM , Fratamico PM , Roberts EL , Deb Roy C , Lindsey RL , VStoneburg D , Martin H , Smith P , Strockbine NA , Elkins CA , Scheutz F , Feng PCH .
J Food Prot 2018 81 (8) 1275-1282 type
High-Quality Whole-Genome Sequences for 77 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing.
Patel PN , Lindsey RL , Garcia-Toledo L , Rowe LA , Batra D , Whitley SW , Drapeau D , Stoneburg D , Martin H , Juieng P , Loparev VN , Strockbine N .
Genome Announc 2018 6 (19) type
DNA microarray-based assessment of virulence potential of Shiga toxin gene-carrying Escherichia coli O104:H7 isolated from feedlot cattle feces.
Shridhar PB , Patel IR , Gangiredla J , Noll LW , Shi X , Bai J , Elkins CA , Strockbine N , Nagaraja TG .
PLoS One 2018 13 (4) e0196490 type
High-Quality Whole-Genome Sequences for 59 Historical Shigella Strains Generated with PacBio Sequencing.
Kim J , Lindsey RL , Garcia-Toledo L , Loparev VN , Rowe LA , Batra D , Juieng P , Stoneburg D , Martin H , Knipe K , Smith P , Strockbine N .
Genome Announc 2018 6 (15) type
Genetic Analysis of Virulence Potential of Escherichia coli O104 Serotypes Isolated From Cattle Feces Using Whole Genome Sequencing.
Shridhar PB , Patel IR , Gangiredla J , Noll LW , Shi X , Bai J , Elkins CA , Strockbine NA , Nagaraja TG .
Front Microbiol 2018 9 (MAR) (341) 341
High-Quality Whole-Genome Sequences for 21 Enterotoxigenic Escherichia coli Strains Generated with PacBio Sequencing.
Smith P , Lindsey RL , Rowe LA , Batra D , Stripling D , Garcia-Toledo L , Drapeau D , Knipe K , Strockbine N .
Genome Announc 2018 6 (2) type
High-Quality Draft Genome Sequences for Four Drug-Resistant or Outbreak-Associated Shigella sonnei Strains Generated with PacBio Sequencing and Whole-Genome Maps.
Lindsey RL , Batra D , Rowe L , Loparev V N , Juieng P , Garcia-Toledo L , Bicknese A , Stripling D , Martin H , Chen J , Strockbine N , Trees E .
Genome Announc 2017 5 (35)
Draft Genome Sequences of Escherichia coli O104 Strains of Bovine and Human Origin.
Shridhar PB , Patel IR , Gangiredla J , Mammel MK , Noll L , Shi X , Bai J , Elkins CA , Strockbine N , Nagaraja TG .
Genome Announc 2017 5 (33)
Multiplex polymerase chain reaction for identification of Escherichia coli, Escherichia albertii and Escherichia fergusonii.
Lindsey RL , Garcia-Toledo L , Fasulo D , Gladney LM , Strockbine N .
J Microbiol Methods 2017 140 1-4
Investigation of Escherichia coli Harboring the mcr-1 Resistance Gene - Connecticut, 2016.
Vasquez AM , Montero N , Laughlin M , Dancy E , Melmed R , Sosa L , Watkins LF , Folster JP , Strockbine N , Moulton-Meissner H , Ansari U , Cartter ML , Walters MS .
MMWR Morb Mortal Wkly Rep 2016 65 (36) 979-980
High-Quality Draft Genome Sequences for Five Non-O157 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing and Optical Maps.
Lindsey RL , Rowe L , Garcia-Toledo L , Loparev V , Knipe K , Stripling D , Martin H , Trees E , Juieng P , Batra D , Strockbine N .
Genome Announc 2016 4 (3)
Implementation of Whole Genome Sequencing (WGS) for Identification and Characterization of Shiga Toxin-Producing Escherichia coli (STEC) in the United States.
Lindsey RL , Pouseele H , Chen JC , Strockbine NA , Carleton HA .
Front Microbiol 2016 7 766
Complete Genome Sequences of Two Shiga Toxin-Producing Escherichia coli Strains from Serotypes O119:H4 and O165:H25.
Lindsey RL , Knipe K , Rowe L , Garcia-Toledo L , Loparev V , Juieng P , Trees E , Strockbine N , Stripling D , Gerner-Smidt P .
Genome Announc 2015 3 (6)
Comparison of whole genome sequences from human and non-human Escherichia coli O26 strains.
Norman KN , Clawson ML , Strockbine NA , Mandrell RE , Johnson R , Ziebell K , Zhao S , Fratamico PM , Stones R , Allard MW , Bono JL .
Front Cell Infect Microbiol 2015 5 21
Clinical isolates of Shiga toxin 1a-producing Shigella flexneri with an epidemiological link to recent travel to Hispañiola.
Gray MD , Lampel KA , Strockbine NA , Fernandez RE , Melton-Celsa AR , Maurelli AT .
Emerg Infect Dis 2014 20 (10) 1669-77
Draft Genome Sequence of Buttiauxella agrestis, Isolated from Surface Water.
Jothikumar N , Kahler A , Strockbine N , Gladney L , Hill VR .
Genome Announc 2014 2 (5)
Draft Genome Sequence of Raoultella planticola, Isolated from River Water.
Jothikumar N , Kahler A , Strockbine N , Gladney L , Hill VR .
Genome Announc 2014 2 (5)
Genome Sequences of 228 Shiga Toxin-Producing Escherichia coli Isolates and 12 Isolates Representing Other Diarrheagenic E. coli Pathotypes.
Trees E , Strockbine N , Changayil S , Ranganathan S , Zhao K , Weil R , MacCannell D , Sabol A , Schmidtke A , Martin H , Stripling D , Ribot EM , Gerner-Smidt P .
Genome Announc 2014 2 (4)
Draft Whole-Genome Sequences of Nine Non-O157 Shiga Toxin-Producing Escherichia coli Strains.
Lindsey RL , Trees E , Sammons S , Loparev V , Frace M , Strockbine N , Sabol AL , Sowers E , Stripling D , Martin H , Knipe K , Rowe L , Gerner-Smidt P .
Genome Announc 2014 2 (4)
Genotypes and virulence characteristics of Shiga toxin-producing Escherichia coli O104 strains from different origins and sources.
Miko A , Delannoy S , Fach P , Strockbine NA , Lindstedt BA , Mariani-Kurkdjian P , Reetz J , Beutin L .
Int J Med Microbiol 2013 303 (8) 410-21
Spread of a distinct Stx2-encoding phage prototype among Escherichia coli O104:H4 strains from outbreaks in Germany, Norway, and Georgia
Beutin L , Hammerl JA , Strauch E , Reetz J , Dieckmann R , Kelner-Burgos Y , Martin A , Miko A , Strockbine NA , Lindstedt BA , Horn D , Monse H , Huettel B , Muller I , Stuber K , Reinhardt R .
J Virol 2012 86 (19) 10444-55
Genomic comparison of Escherichia coli O104:H4 isolates from 2009 and 2011 reveals plasmid, and prophage heterogeneity, including shiga toxin encoding phage stx2.
Ahmed SA , Awosika J , Baldwin C , Bishop-Lilly KA , Biswas B , Broomall S , Chain PS , Chertkov O , Chokoshvili O , Coyne S , Davenport K , Detter JC , Dorman W , Erkkila TH , Folster JP , Frey KG , George M , Gleasner C , Henry M , Hill KK , Hubbard K , Insalaco J , Johnson S , Kitzmiller A , Krepps M , Lo CC , Luu T , McNew LA , Minogue T , Munk CA , Osborne B , Patel M , Reitenga KG , Rosenzweig CN , Shea A , Shen X , Strockbine N , Tarr C , Teshima H , van Gieson E , Verratti K , Wolcott M , Xie G , Sozhamannan S , Gibbons HS .
PLoS One 2012 7 (11) e48228
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