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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Mar 21, 2025. (Total: 6600 publications)
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Records 1-30 (of 83 Records)
Query Trace: Silva H[original query]
Factors associated with tuberculosis treatment initiation among bacteriologically negative individuals evaluated for tuberculosis: An individual patient data meta-analysis
Kim S , Can MH , Agizew TB , Auld AF , Balcells ME , Bjerrum S , Dheda K , Dorman SE , Esmail A , Fielding K , Garcia-Basteiro AL , Hanrahan CF , Kebede W , Kohli M , Luetkemeyer AF , Mita C , Reeve BWP , Silva DR , Sweeney S , Theron G , Trajman A , Vassall A , Warren JL , Yotebieng M , Cohen T , Menzies NA .
PLoS Med 2025 22 (1) e1004502
Genomic perspective on the bacillus causing paratyphoid B fever
Hawkey J , Frézal L , Tran Dien A , Zhukova A , Brown D , Chattaway MA , Simon S , Izumiya H , Fields PI , De Lappe N , Kaftyreva L , Xu X , Isobe J , Clermont D , Njamkepo E , Akeda Y , Issenhuth-Jeanjean S , Makarova M , Wang Y , Hunt M , Jenkins BM , Ravel M , Guibert V , Serre E , Matveeva Z , Fabre L , Cormican M , Yue M , Zhu B , Morita M , Iqbal Z , Silva Nodari C , Pardos de la Gandara M , Weill FX .
Nat Commun 2024 15 (1) 10143 type
The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotype 1 in North, Central, and East Africa
Orf GS , Bbosa N , Berg MG , Downing R , Weiss SL , Ssemwanga D , Ssekagiri A , Ashraf S , da Silva Filipe A , Kiiza R , Buule J , Namagembe HS , Nabirye SE , Kayiwa J , Deng LL , Wani G , Maror JA , Baguma A , Mogga JJH , Kamili S , Thomson EC , Kaleebu P , Cloherty GA .
Infect Genet Evol 2024 105667 type
HIV-1 pretreatment and acquired antiretroviral drug resistance before tenofovir/ /lamivudine /dolutegravir (TLD) roll-out in Mozambique
Ismael N , Gemusse H , Mahumane I , Laurindo O , Magul C , Baxter C , Wilkinson E , Hofstra LM , Wagar N , Bila D , Mabunda N , da Silva J , Oliveira T , Raizes E , Preiser W , Manuel P , Ramos A , Vúbil A .
BMC Infect Dis 2024 24 (1) 748 type
Juvenile hormone as a contributing factor in establishing midgut microbiota for fecundity and fitness enhancement in adult female Aedes aegypti
Taracena-Agarwal ML , Walter-Nuno AB , Bottino-Rojas V , Mejia APG , Xu K , Segal S , Dotson EM , Oliveira PL , Paiva-Silva GO .
Commun Biol 2024 7 (1) 687
Sources and prevalence of Cyclospora cayetanensis in southeastern U.S. Growing environments
Kahler AM , Hofstetter J , Arrowood M , Peterson A , Jacobson D , Barratt J , Luiz Biscaia Ribeiro da Silva A , Rodrigues C , Mattioli MC .
J Food Prot 2024 100309 type
ORF virus causes tumor-promoting inflammation in sheep and goats
Pintus D , Cancedda MG , Puggioni G , Scivoli R , Rocchigiani AM , Maestrale C , Coradduzza E , Bechere R , Silva-Flannery L , Bullock HA , Macciocu S , Montesu MA , Marras V , Dore S , Ritter JM , Ligios C .
Vet Pathol 2024 3009858241241794
Molecular and Phenotypic Characterization of a Highly Evolved Type 2 Vaccine-Derived Poliovirus Isolated from Seawater in Brazil, 2014.
Cassemiro KM , Burlandy FM , Barbosa MR , Chen Q , Jorba J , Hachich EM , Sato MI , Burns CC , da Silva EE .
PLoS One 2016 11 (3) e0152251
Pathology and monkeypox virus localization in tissues from immunocompromised patients with severe or fatal mpox
Ritter JM , Martines RB , Bhatnagar J , Rao AK , Villalba JA , Silva-Flannery L , Lee E , Bullock HA , Hutson CL , Cederroth T , Harris CK , Hord K , Xu Y , Brown CA , Guccione JP , Miller M , Paddock CD , Reagan-Steiner S .
J Infect Dis 2024 type
Host-response transcriptional biomarkers accurately discriminate bacterial and viral infections of global relevance
Ko ER , Reller ME , Tillekeratne LG , Bodinayake CK , Miller C , Burke TW , Henao R , McClain MT , Suchindran S , Nicholson B , Blatt A , Petzold E , Tsalik EL , Nagahawatte A , Devasiri V , Rubach MP , Maro VP , Lwezaula BF , Kodikara-Arachichi W , Kurukulasooriya R , De Silva AD , Clark DV , Schully KL , Madut D , Dumler JS , Kato C , Galloway R , Crump JA , Ginsburg GS , Minogue TD , Woods CW .
Sci Rep 2023 13 (1) 22554 type
Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes
Carey ME , Dyson ZA , Ingle DJ , Amir A , Aworh MK , Chattaway MA , Chew KL , Crump JA , Feasey NA , Howden BP , Keddy KH , Maes M , Parry CM , Van Puyvelde S , Webb HE , Afolayan AO , Alexander AP , Anandan S , Andrews JR , Ashton PM , Basnyat B , Bavdekar A , Bogoch II , Clemens JD , da Silva KE , De A , de Ligt J , Diaz Guevara PL , Dolecek C , Dutta S , Ehlers MM , Francois Watkins L , Garrett DO , Godbole G , Gordon MA , Greenhill AR , Griffin C , Gupta M , Hendriksen RS , Heyderman RS , Hooda Y , Hormazabal JC , Ikhimiukor OO , Iqbal J , Jacob JJ , Jenkins C , Jinka DR , John J , Kang G , Kanteh A , Kapil A , Karkey A , Kariuki S , Kingsley RA , Koshy RM , Lauer AC , Levine MM , Lingegowda RK , Luby SP , Mackenzie GA , Mashe T , Msefula C , Mutreja A , Nagaraj G , Nagaraj S , Nair S , Naseri TK , Nimarota-Brown S , Njamkepo E , Okeke IN , Perumal SPB , Pollard AJ , Pragasam AK , Qadri F , Qamar FN , Rahman SIA , Rambocus SD , Rasko DA , Ray P , Robins-Browne R , Rongsen-Chandola T , Rutanga JP , Saha SK , Saha S , Saigal K , Sajib MSI , Seidman JC , Shakya J , Shamanna V , Shastri J , Shrestha R , Sia S , Sikorski MJ , Singh A , Smith AM , Tagg KA , Tamrakar D , Tanmoy AM , Thomas M , Thomas MS , Thomsen R , Thomson NR , Tupua S , Vaidya K , Valcanis M , Veeraraghavan B , Weill FX , Wright J , Dougan G , Argimón S , Keane JA , Aanensen DM , Baker S , Holt KE .
Elife 2023 12 type
Transmission of yellow fever vaccine virus through blood transfusion and organ transplantation in the USA in 2021: Report of an investigation
Gould CV , Free RJ , Bhatnagar J , Soto RA , Royer TL , Maley WR , Moss S , Berk MA , Craig-Shapiro R , Kodiyanplakkal RPL , Westblade LF , Muthukumar T , Puius YA , Raina A , Hadi A , Gyure KA , Trief D , Pereira M , Kuehnert MJ , Ballen V , Kessler DA , Dailey K , Omura C , Doan T , Miller S , Wilson MR , Lehman JA , Ritter JM , Lee E , Silva-Flannery L , Reagan-Steiner S , Velez JO , Laven JJ , Fitzpatrick KA , Panella A , Davis EH , Hughes HR , Brault AC , St George K , Dean AB , Ackelsberg J , Basavaraju SV , Chiu CY , Staples JE .
Lancet Microbe 2023 4 (9) e711-e721 type
Population structure and antimicrobial resistance patterns of Salmonella Typhi and Paratyphi A amid a phased municipal vaccination campaign in Navi Mumbai, India
da Silva KE , Date K , Hirani N , LeBoa C , Jayaprasad N , Borhade P , Warren J , Shimpi R , Hoffman SA , Mikoleit M , Bhatnagar P , Cao Y , Haldar P , Harvey P , Zhang C , Daruwalla S , Dharmapalan D , Gavhane J , Joshi S , Rai R , Rathod V , Shetty K , Warrier DS , Yadav S , Chakraborty D , Bahl S , Katkar A , Kunwar A , Yewale V , Dutta S , Luby SP , Andrews JR .
mBio 2023 14 (4) e0117923 type
Targeted and whole-genome sequencing reveal a north-south divide in P. falciparum drug resistance markers and genetic structure in Mozambique
da Silva C , Boene S , Datta D , Rovira-Vallbona E , Aranda-Díaz A , Cisteró P , Hathaway N , Tessema S , Chidimatembue A , Matambisso G , Nhama A , Macete E , Pujol A , Nhamussua L , Galatas B , Guinovart C , Enosse S , De Carvalho E , Rogier E , Plucinski MM , Colborn J , Zulliger R , Saifodine A , Alonso PL , Candrinho B , Greenhouse B , Aide P , Saute F , Mayor A .
Commun Biol 2023 6 (1) 619
Model-based estimation of transmissibility and reinfection of SARS-CoV-2 P.1 variant.
Coutinho RM , Marquitti FMD , Ferreira LS , Borges ME , da Silva RLP , Canton O , Portella TP , Poloni S , Franco C , Plucinski MM , Lessa FC , da Silva AAM , Kraenkel RA , de Sousa Mascena Veras MA , Prado PI .
Commun Med (Lond) 2021 1 48
Etiology of acute febrile illness in the peruvian amazon as determined by modular formatted quantitative PCR: a protocol for RIVERA, a health facility-based case-control study.
Peñataro Yori P , Paredes Olórtegui M , Schiaffino F , Colston JM , Pinedo Vasquez T , Garcia Bardales PF , Shapiama Lopez V , Zegarra Paredes LF , Perez K , Curico G , Flynn T , Zhang J , Ramal Asayag C , Meza Sanchez G , Silva Delgado H , Casapia Morales M , Casanova W , Jiu B , Oberhelman R , Munayco Escate C , Silver R , Henao O , Cooper KK , Liu J , Houpt ER , Kosek MN .
BMC Public Health 2023 23 (1) 674 type
Interpreting biomonitoring data: Introducing the international human biomonitoring (i-HBM) working group's health-based guidance value (HB2GV) dashboard.
Nakayama SF , St-Amand A , Pollock T , Apel P , Bamai YA , Barr DB , Bessems J , Calafat AM , Castaño A , Covaci A , Duca RC , Faure S , Galea KS , Hays S , Hopf NB , Ito Y , Jeddi MZ , Kolossa-Gehring M , Kumar E , LaKind JS , López ME , Louro H , Macey K , Makris KC , Melnyk L , Murawski A , Naiman J , Nassif J , Noisel N , Poddalgoda D , Quirós-Alcalá L , Rafiee A , Rambaud L , Silva MJ , Ueyama J , Verner MA , Waras MN , Werry K .
Int J Hyg Environ Health 2022 247 114046
Bovine Polyomavirus-1 (Epsilonpolyomavirus bovis): An Emerging Fetal Pathogen of Cattle That Causes Renal Lesions Resembling Polyomavirus-Associated Nephropathy of Humans.
Giannitti F , daSilvaSilveira C , Bullock H , Bern M , Fernndez-Ciganda S , Bentez-Galeano MJ , Rodrguez-Osorio N , Silva-Flannery L , Perdomo Y , Cabrera A , Puentes R , Colina R , Ritter JM , Castells M .
Viruses 2022 14 (9)
Factors Associated With Severe Illness in Patients Aged <21 Years Hospitalized for COVID-19.
Choudhary R , Webber BJ , Womack LS , Dupont HK , Chiu SK , Wanga V , Gerdes ME , Hsu S , Shi DS , Dulski TM , Idubor OI , Wendel AM , Agathis NT , Anderson K , Boyles T , Click ES , Silva JD , Evans ME , Gold JAW , Haston JC , Logan P , Maloney SA , Martinez M , Natarajan P , Spicer KB , Swancutt M , Stevens VA , Rogers-Brown J , Chandra G , Light M , Barr FE , Snowden J , Kociolek LK , McHugh M , Wessel DL , Simpson JN , Gorman KC , Breslin KA , DeBiasi RL , Thompson A , Kline MW , Boom JA , Singh IR , Dowlin M , Wietecha M , Schweitzer B , Morris SB , Koumans EH , Ko JY , Siegel DA , Kimball AA .
Hosp Pediatr 2022 12 (9) 760-783
Drug resistance and use of long-acting ART.
daSilva J , Siedner M , McCluskey S , Chandiwana N , Venter F , Raizes E .
Lancet HIV 2022 9 (6) e374-e375 type
Concurrent outbreaks of circulating vaccine-derived poliovirus types 1 and 2 affecting the Republic of the Philippines and Malaysia, 2019-2021.
Snider CJ , Boualam L , Tallis G , Takashima Y , Abeyasinghe R , Lo YR , Grabovac V , Avagyan T , Aslam SK , Eltayeb AO , Aung KD , Wang X , Shrestha A , Ante-Orozco C , Silva MWT , Lapastora-Sucaldito N , Apostol LNG , Jikal MBH , Miraj W , Lodhi F , Kim HJ , Rusli N , Thorley BR , Kaye MB , Nishimura Y , Arita M , Sani JAM , Rundi C , Feldon K .
Vaccine 2022 41 Suppl 1 A58-A69 type
Active surveillance and early detection of community transmission of SARS-CoV-2 Mu variant (B.1.621) in the Brazilian Amazon.
Oliveira GS , Silva-Flannery L , daSilva JF , Siza C , Esteves RJ , Marston BJ , Morgan J , Plucinski M , Roca TP , Silva Ampd , Pereira SS , Salcedo JMV , Pereira D , Naveca FG , VieiraDall'Acqua DS .
J Med Virol 2022 94 (7) 3410-3415
VPipe: an Automated Bioinformatics Platform for Assembly and Management of Viral Next-Generation Sequencing Data.
Wagner DD , Marine RL , Ramos E , Ng TFF , Castro CJ , Okomo-Adhiambo M , Harvey K , Doho G , Kelly R , Jain Y , Tatusov RL , Silva H , Rota PA , Khan AN , Oberste MS .
Microbiol Spectr 2022 10 (2) e0256421 type
Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package.
Griffiths EJ , Timme RE , Mendes CI , Page AJ , Alikhan NF , Fornika D , Maguire F , Campos J , Park D , Olawoye IB , Oluniyi PE , Anderson D , Christoffels A , da Silva AG , Cameron R , Dooley D , Katz LS , Black A , Karsch-Mizrachi I , Barrett T , Johnston A , Connor TR , Nicholls SM , Witney AA , Tyson GH , Tausch SH , Raphenya AR , Alcock B , Aanensen DM , Hodcroft E , Hsiao WWL , Vasconcelos ATR , MacCannell DR .
Gigascience 2022 11 type
Delivery of Double-Stranded RNAs (dsRNAs) Produced by Escherichia coli HT115(DE3) for Nontransgenic RNAi-Based Insect Pest Management.
Taracena ML , GarciaCaffaro I , Paiva-Silva GO , Oliveira PL , Rendon PA , Dotson EM , Pennington PM .
Methods Mol Biol 2022 2360 279-294 type
Monitoring emerging HIV drug resistance in sub-Saharan Africa in the era of dolutegravir.
da Silva J , Pals S , Chang J , Hackett S , Godfrey C , Raizes E .
J Infect Dis 2021 225 (3) 364-366 type
Epidemiologic, immunologic, and virus characteristics in patients with paired SARS-CoV-2 serology and reverse transcription polymerase chain reaction testing.
Shragai T , Smith-Jeffcoat SE , Koh M , Schechter MC , Rebolledo PA , Kasinathan V , Wang Y , Hoffman A , Miller H , Tejada-Strop A , Jain S , Tamin A , Harcourt JL , Thornburg NJ , Wong P , Medrzycki M , Folster JM , Semenova V , Steward-Clark E , Drobenuic J , Biedron C , Stewart RJ , da Silva J , Kirking HL , Tate JE .
J Infect Dis 2021 225 (2) 229-237
CATMoS: Collaborative Acute Toxicity Modeling Suite.
Mansouri K , Karmaus AL , Fitzpatrick J , Patlewicz G , Pradeep P , Alberga D , Alepee N , Allen TEH , Allen D , Alves VM , Andrade CH , Auernhammer TR , Ballabio D , Bell S , Benfenati E , Bhattacharya S , Bastos JV , Boyd S , Brown JB , Capuzzi SJ , Chushak Y , Ciallella H , Clark AM , Consonni V , Daga PR , Ekins S , Farag S , Fedorov M , Fourches D , Gadaleta D , Gao F , Gearhart JM , Goh G , Goodman JM , Grisoni F , Grulke CM , Hartung T , Hirn M , Karpov P , Korotcov A , Lavado GJ , Lawless M , Li X , Luechtefeld T , Lunghini F , Mangiatordi GF , Marcou G , Marsh D , Martin T , Mauri A , Muratov EN , Myatt GJ , Nguyen DT , Nicolotti O , Note R , Pande P , Parks AK , Peryea T , Polash AH , Rallo R , Roncaglioni A , Rowlands C , Ruiz P , Russo DP , Sayed A , Sayre R , Sheils T , Siegel C , Silva AC , Simeonov A , Sosnin S , Southall N , Strickland J , Tang Y , Teppen B , Tetko IV , Thomas D , Tkachenko V , Todeschini R , Toma C , Tripodi I , Trisciuzzi D , Tropsha A , Varnek A , Vukovic K , Wang Z , Wang L , Waters KM , Wedlake AJ , Wijeyesakere SJ , Wilson D , Xiao Z , Yang H , Zahoranszky-Kohalmi G , Zakharov AV , Zhang FF , Zhang Z , Zhao T , Zhu H , Zorn KM , Casey W , Kleinstreuer NC .
Environ Health Perspect 2021 129 (4) 47013
Performance evaluation of fungal DNA PCR amplification from formalin-fixed paraffin-embedded tissue for diagnosis; experience of a tertiary reference laboratory.
Lysen C , Silva-Flannery L , Zaki SR , Gary JM , Lockhart SR .
Mycoses 2021 64 (6) 603-611 type
Web-Based Genome Analysis of Bacterial Meningitis Pathogens for Public Health Applications Using the Bacterial Meningitis Genomic Analysis Platform (BMGAP).
Buono SA , Kelly RJ , Topaz N , Retchless AC , Silva H , Chen A , Ramos E , Doho G , Khan AN , Okomo-Adhiambo MA , Hu F , Marasini D , Wang X .
Front Genet 2020 11 601870 type
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